HEADER DNA BINDING PROTEIN 25-AUG-25 9Q7Z TITLE ONE OF A SERIES OF ENGINEERED VARIANTS OF I-ONUI MEGANUCLEASE TITLE 2 TARGETING ALTERED DNA TARGET SEQUENCE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EI-ONUI_P456_CGG; COMPND 3 CHAIN: A, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (26-MER); COMPND 7 CHAIN: B, E; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (26-MER); COMPND 11 CHAIN: C, F; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630; SOURCE 10 MOL_ID: 3; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS MEGANUCLEASE, STRUCTURE PREDICTION, PROTEIN ENGINEERING, DNA BINDING KEYWDS 2 PROTEIN-DNA COMPLEX, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.WERTHER,B.L.STODDARD REVDAT 1 10-SEP-25 9Q7Z 0 JRNL AUTH M.A.ESLER,R.WERTHER,P.BRADLEY,B.L.STODDARD JRNL TITL PREDICTION, MODELING AND DESIGN OF PROTEIN-DNA RECOGNITION JRNL TITL 2 VIA COMPUTATIONAL AND MACHINE LEARNING APPROACHES: JRNL TITL 3 ACCOMPLISHMENTS AND REMAINING CHALLENGES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 15020 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1503 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.8700 - 7.3679 0.99 1367 155 0.1917 0.2117 REMARK 3 2 7.3679 - 5.8536 1.00 1300 141 0.2566 0.2712 REMARK 3 3 5.8536 - 5.1153 1.00 1286 147 0.2443 0.3278 REMARK 3 4 5.1153 - 4.6483 1.00 1286 145 0.2271 0.2728 REMARK 3 5 4.6483 - 4.3155 1.00 1295 146 0.2382 0.2698 REMARK 3 6 4.3155 - 4.0613 0.99 1250 127 0.2565 0.3310 REMARK 3 7 4.0613 - 3.8581 0.99 1276 157 0.2760 0.3252 REMARK 3 8 3.8581 - 3.6903 0.99 1243 132 0.2906 0.3835 REMARK 3 9 3.6903 - 3.5483 0.96 1234 123 0.2861 0.3637 REMARK 3 10 3.5483 - 3.4259 0.91 1138 140 0.2926 0.4220 REMARK 3 11 3.4259 - 3.3190 0.66 842 90 0.2942 0.3875 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 94.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6338 REMARK 3 ANGLE : 0.533 9090 REMARK 3 CHIRALITY : 0.035 1055 REMARK 3 PLANARITY : 0.002 822 REMARK 3 DIHEDRAL : 17.829 3282 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9Q7Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-25. REMARK 100 THE DEPOSITION ID IS D_1000299498. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 108 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15108 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.15400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.16 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 150MM DL-MALIC ACID PH 7.0, 25% PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 163.89750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.23600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 163.89750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.23600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 LEU A 192 REMARK 465 GLY A 193 REMARK 465 VAL A 194 REMARK 465 THR A 227 REMARK 465 ASN A 228 REMARK 465 LYS A 229 REMARK 465 SER A 230 REMARK 465 GLU A 231 REMARK 465 MET D 2 REMARK 465 ALA D 3 REMARK 465 SER D 4 REMARK 465 GLU D 226 REMARK 465 THR D 227 REMARK 465 ASN D 228 REMARK 465 LYS D 229 REMARK 465 SER D 230 REMARK 465 GLU D 231 REMARK 465 PHE D 232 REMARK 465 SER D 233 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 5 OG REMARK 470 ARG A 6 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 7 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 SER A 9 OG REMARK 470 ASN A 11 CG OD1 ND2 REMARK 470 ILE A 14 CG1 CG2 CD1 REMARK 470 LEU A 15 CG CD1 CD2 REMARK 470 THR A 16 OG1 CG2 REMARK 470 ASN A 31 CG OD1 ND2 REMARK 470 ASN A 33 CG OD1 ND2 REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 SER A 35 OG REMARK 470 SER A 36 OG REMARK 470 TYR A 39 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 SER A 55 OG REMARK 470 GLU A 58 CG CD OE1 OE2 REMARK 470 SER A 62 OG REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 LYS A 80 CG CD CE NZ REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 VAL A 89 CG1 CG2 REMARK 470 ILE A 90 CG1 CG2 CD1 REMARK 470 GLU A 95 CG CD OE1 OE2 REMARK 470 LYS A 96 CG CD CE NZ REMARK 470 ILE A 100 CG1 CG2 CD1 REMARK 470 LEU A 104 CG CD1 CD2 REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 LYS A 111 CG CD CE NZ REMARK 470 GLN A 112 CG CD OE1 NE2 REMARK 470 GLU A 118 CG CD OE1 OE2 REMARK 470 ASN A 119 CG OD1 ND2 REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 LEU A 123 CG CD1 CD2 REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 GLU A 125 CG CD OE1 OE2 REMARK 470 ASN A 126 CG OD1 ND2 REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 GLU A 130 CG CD OE1 OE2 REMARK 470 VAL A 132 CG1 CG2 REMARK 470 ARG A 133 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 LEU A 138 CG CD1 CD2 REMARK 470 ASP A 144 CG OD1 OD2 REMARK 470 GLU A 145 CG CD OE1 OE2 REMARK 470 LEU A 146 CG CD1 CD2 REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 GLU A 152 CG CD OE1 OE2 REMARK 470 ASN A 153 CG OD1 ND2 REMARK 470 ILE A 154 CG1 CG2 CD1 REMARK 470 SER A 155 OG REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 GLU A 157 CG CD OE1 OE2 REMARK 470 ARG A 158 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 160 CG CD1 CD2 REMARK 470 ILE A 161 CG1 CG2 CD1 REMARK 470 ASN A 162 CG OD1 ND2 REMARK 470 LYS A 163 CG CD CE NZ REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 LEU A 171 CG CD1 CD2 REMARK 470 LEU A 185 CG CD1 CD2 REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 SER A 188 OG REMARK 470 LYS A 189 CG CD CE NZ REMARK 470 SER A 190 OG REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 VAL A 196 CG1 CG2 REMARK 470 ILE A 206 CG1 CG2 CD1 REMARK 470 LYS A 207 CG CD CE NZ REMARK 470 LYS A 209 CG CD CE NZ REMARK 470 ASN A 210 CG OD1 ND2 REMARK 470 ASN A 213 CG OD1 ND2 REMARK 470 SER A 214 OG REMARK 470 ILE A 216 CG1 CG2 CD1 REMARK 470 THR A 217 OG1 CG2 REMARK 470 GLU A 226 CG CD OE1 OE2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 SER A 243 OG REMARK 470 ASN A 246 CG OD1 ND2 REMARK 470 LYS A 248 CG CD CE NZ REMARK 470 ILE A 249 CG1 CG2 CD1 REMARK 470 VAL A 252 CG1 CG2 REMARK 470 GLU A 255 CG CD OE1 OE2 REMARK 470 LYS A 262 CG CD CE NZ REMARK 470 GLU A 264 CG CD OE1 OE2 REMARK 470 GLU A 267 CG CD OE1 OE2 REMARK 470 LYS A 271 CG CD CE NZ REMARK 470 VAL A 272 CG1 CG2 REMARK 470 LYS A 274 CG CD CE NZ REMARK 470 LEU A 275 CG CD1 CD2 REMARK 470 ILE A 276 CG1 CG2 CD1 REMARK 470 GLU A 277 CG CD OE1 OE2 REMARK 470 GLU A 278 CG CD OE1 OE2 REMARK 470 LYS A 279 CG CD CE NZ REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 LEU A 282 CG CD1 CD2 REMARK 470 GLU A 284 CG CD OE1 OE2 REMARK 470 SER A 285 OG REMARK 470 LEU A 287 CG CD1 CD2 REMARK 470 ASP A 288 CG OD1 OD2 REMARK 470 GLU A 289 CG CD OE1 OE2 REMARK 470 LYS A 291 CG CD CE NZ REMARK 470 LYS A 292 CG CD CE NZ REMARK 470 ILE A 293 CG1 CG2 CD1 REMARK 470 LYS A 294 CG CD CE NZ REMARK 470 LEU A 295 CG CD1 CD2 REMARK 470 LYS A 299 CG CD CE NZ REMARK 470 ARG A 301 CG CD NE CZ NH1 NH2 REMARK 470 SER D 5 OG REMARK 470 ARG D 6 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 7 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 8 CG CD OE1 OE2 REMARK 470 SER D 9 OG REMARK 470 ILE D 14 CG1 CG2 CD1 REMARK 470 THR D 16 OG1 CG2 REMARK 470 ILE D 29 CG1 CG2 CD1 REMARK 470 ASN D 32 CG OD1 ND2 REMARK 470 LYS D 34 CG CD CE NZ REMARK 470 SER D 35 OG REMARK 470 SER D 36 OG REMARK 470 VAL D 37 CG1 CG2 REMARK 470 TYR D 39 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS D 52 CG CD CE NZ REMARK 470 LYS D 54 CG CD CE NZ REMARK 470 GLU D 58 CG CD OE1 OE2 REMARK 470 ILE D 60 CG1 CG2 CD1 REMARK 470 LYS D 65 CG CD CE NZ REMARK 470 VAL D 68 CG1 CG2 REMARK 470 ASP D 74 CG OD1 OD2 REMARK 470 GLU D 85 CG CD OE1 OE2 REMARK 470 LEU D 87 CG CD1 CD2 REMARK 470 LYS D 88 CG CD CE NZ REMARK 470 VAL D 89 CG1 CG2 REMARK 470 ILE D 90 CG1 CG2 CD1 REMARK 470 ILE D 91 CG1 CG2 CD1 REMARK 470 ASP D 92 CG OD1 OD2 REMARK 470 LYS D 96 CG CD CE NZ REMARK 470 LEU D 99 CG CD1 CD2 REMARK 470 ILE D 100 CG1 CG2 CD1 REMARK 470 ASP D 106 CG OD1 OD2 REMARK 470 LYS D 108 CG CD CE NZ REMARK 470 LEU D 109 CG CD1 CD2 REMARK 470 LYS D 111 CG CD CE NZ REMARK 470 GLN D 112 CG CD OE1 NE2 REMARK 470 GLU D 118 CG CD OE1 OE2 REMARK 470 ASN D 119 CG OD1 ND2 REMARK 470 GLU D 121 CG CD OE1 OE2 REMARK 470 LEU D 123 CG CD1 CD2 REMARK 470 LYS D 124 CG CD CE NZ REMARK 470 GLU D 125 CG CD OE1 OE2 REMARK 470 ASN D 126 CG OD1 ND2 REMARK 470 LYS D 129 CG CD CE NZ REMARK 470 GLU D 130 CG CD OE1 OE2 REMARK 470 LEU D 131 CG CD1 CD2 REMARK 470 VAL D 132 CG1 CG2 REMARK 470 ARG D 133 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 137 CG CD CE NZ REMARK 470 ASN D 139 CG OD1 ND2 REMARK 470 LEU D 142 CG CD1 CD2 REMARK 470 ASP D 144 CG OD1 OD2 REMARK 470 GLU D 145 CG CD OE1 OE2 REMARK 470 LEU D 146 CG CD1 CD2 REMARK 470 LYS D 147 CG CD CE NZ REMARK 470 LYS D 148 CG CD CE NZ REMARK 470 GLU D 152 CG CD OE1 OE2 REMARK 470 ASN D 153 CG OD1 ND2 REMARK 470 ILE D 154 CG1 CG2 CD1 REMARK 470 SER D 155 OG REMARK 470 ARG D 158 CG CD NE CZ NH1 NH2 REMARK 470 LEU D 160 CG CD1 CD2 REMARK 470 ASN D 162 CG OD1 ND2 REMARK 470 LYS D 163 CG CD CE NZ REMARK 470 PHE D 168 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS D 169 CG CD CE NZ REMARK 470 VAL D 183 CG1 CG2 REMARK 470 ILE D 186 CG1 CG2 CD1 REMARK 470 LYS D 187 CG CD CE NZ REMARK 470 SER D 188 OG REMARK 470 LYS D 189 CG CD CE NZ REMARK 470 SER D 190 OG REMARK 470 LYS D 191 CG CD CE NZ REMARK 470 VAL D 194 CG1 CG2 REMARK 470 LEU D 198 CG CD1 CD2 REMARK 470 GLN D 204 CG CD OE1 NE2 REMARK 470 HIS D 205 CG ND1 CD2 CE1 NE2 REMARK 470 LYS D 207 CG CD CE NZ REMARK 470 ASP D 208 CG OD1 OD2 REMARK 470 LYS D 209 CG CD CE NZ REMARK 470 ASN D 210 CG OD1 ND2 REMARK 470 LEU D 211 CG CD1 CD2 REMARK 470 MET D 212 CG SD CE REMARK 470 ASN D 213 CG OD1 ND2 REMARK 470 LEU D 215 CG CD1 CD2 REMARK 470 TYR D 218 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU D 219 CG CD1 CD2 REMARK 470 ILE D 224 CG1 CG2 CD1 REMARK 470 VAL D 238 CG1 CG2 REMARK 470 LYS D 241 CG CD CE NZ REMARK 470 PHE D 242 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER D 243 OG REMARK 470 ILE D 245 CG1 CG2 CD1 REMARK 470 ASP D 247 CG OD1 OD2 REMARK 470 LYS D 248 CG CD CE NZ REMARK 470 ILE D 250 CG1 CG2 CD1 REMARK 470 VAL D 252 CG1 CG2 REMARK 470 GLN D 254 CG CD OE1 NE2 REMARK 470 GLU D 255 CG CD OE1 OE2 REMARK 470 THR D 257 OG1 CG2 REMARK 470 ILE D 259 CG1 CG2 CD1 REMARK 470 GLU D 264 CG CD OE1 OE2 REMARK 470 GLU D 267 CG CD OE1 OE2 REMARK 470 LYS D 271 CG CD CE NZ REMARK 470 VAL D 272 CG1 CG2 REMARK 470 LYS D 274 CG CD CE NZ REMARK 470 ILE D 276 CG1 CG2 CD1 REMARK 470 GLU D 277 CG CD OE1 OE2 REMARK 470 GLU D 278 CG CD OE1 OE2 REMARK 470 LYS D 279 CG CD CE NZ REMARK 470 LYS D 280 CG CD CE NZ REMARK 470 LEU D 282 CG CD1 CD2 REMARK 470 GLU D 284 CG CD OE1 OE2 REMARK 470 SER D 285 OG REMARK 470 LEU D 287 CG CD1 CD2 REMARK 470 ASP D 288 CG OD1 OD2 REMARK 470 ILE D 290 CG1 CG2 CD1 REMARK 470 LYS D 291 CG CD CE NZ REMARK 470 LYS D 292 CG CD CE NZ REMARK 470 ILE D 293 CG1 CG2 CD1 REMARK 470 ASN D 296 CG OD1 ND2 REMARK 470 LYS D 299 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 7 160.97 64.10 REMARK 500 SER A 72 30.62 -96.79 REMARK 500 ASN A 139 -145.13 67.28 REMARK 500 LYS A 156 -43.74 -159.71 REMARK 500 GLU A 157 98.18 57.33 REMARK 500 LYS A 189 -153.82 -85.94 REMARK 500 SER A 190 -83.04 57.02 REMARK 500 SER A 233 -134.13 51.93 REMARK 500 TRP A 234 178.23 61.94 REMARK 500 LEU A 235 169.75 171.13 REMARK 500 ASN A 298 -121.61 61.77 REMARK 500 SER D 72 30.97 -96.99 REMARK 500 GLN D 112 -23.70 65.21 REMARK 500 ASN D 139 -141.18 65.27 REMARK 500 LYS D 156 102.42 -43.86 REMARK 500 GLU D 157 -69.05 -95.22 REMARK 500 LYS D 189 -153.05 -89.42 REMARK 500 SER D 190 87.33 57.32 REMARK 500 LYS D 191 -117.05 56.48 REMARK 500 VAL D 194 82.26 -64.93 REMARK 500 LEU D 219 -116.56 -89.31 REMARK 500 ASN D 298 -121.22 61.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 21 O REMARK 620 2 GLU A 178 OE2 61.5 REMARK 620 3 HOH A 502 O 66.8 61.4 REMARK 620 4 DC B 16 OP1 121.0 61.4 97.6 REMARK 620 5 DA C 16 OP2 77.3 59.8 120.4 62.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 22 OE2 REMARK 620 2 GLY A 177 O 68.5 REMARK 620 3 DA B 17 OP2 66.9 64.6 REMARK 620 4 DT C 15 OP1 68.5 137.0 99.3 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9PZ7 RELATED DB: PDB REMARK 900 RELATED ID: 9PZH RELATED DB: PDB REMARK 900 RELATED ID: 9Q0H RELATED DB: PDB REMARK 900 RELATED ID: 9Q7V RELATED DB: PDB REMARK 900 RELATED ID: 9Q7W RELATED DB: PDB DBREF 9Q7Z A 2 301 PDB 9Q7Z 9Q7Z 2 301 DBREF 9Q7Z B 1 26 PDB 9Q7Z 9Q7Z 1 26 DBREF 9Q7Z C 1 26 PDB 9Q7Z 9Q7Z 1 26 DBREF 9Q7Z D 2 301 PDB 9Q7Z 9Q7Z 2 301 DBREF 9Q7Z E 1 26 PDB 9Q7Z 9Q7Z 1 26 DBREF 9Q7Z F 1 26 PDB 9Q7Z 9Q7Z 1 26 SEQRES 1 A 300 MET ALA SER SER ARG ARG GLU SER ILE ASN PRO TRP ILE SEQRES 2 A 300 LEU THR GLY PHE ALA ASP ALA GLU GLY SER PHE LEU LEU SEQRES 3 A 300 ARG ILE ARG ASN ASN ASN LYS SER SER VAL GLY TYR SER SEQRES 4 A 300 THR GLU LEU GLY PHE GLN ILE THR LEU HIS ASN LYS ASP SEQRES 5 A 300 LYS SER ILE LEU GLU ASN ILE GLN SER THR TRP LYS VAL SEQRES 6 A 300 GLY VAL ILE ALA ASN SER GLY ASP ASN ALA VAL SER LEU SEQRES 7 A 300 LYS VAL THR ARG PHE GLU ASP LEU LYS VAL ILE ILE ASP SEQRES 8 A 300 HIS PHE GLU LYS TYR PRO LEU ILE THR GLN LYS LEU GLY SEQRES 9 A 300 ASP TYR LYS LEU PHE LYS GLN ALA PHE SER VAL MET GLU SEQRES 10 A 300 ASN LYS GLU HIS LEU LYS GLU ASN GLY ILE LYS GLU LEU SEQRES 11 A 300 VAL ARG ILE LYS ALA LYS LEU ASN TRP GLY LEU THR ASP SEQRES 12 A 300 GLU LEU LYS LYS ALA PHE PRO GLU ASN ILE SER LYS GLU SEQRES 13 A 300 ARG SER LEU ILE ASN LYS ASN ILE PRO ASN PHE LYS TRP SEQRES 14 A 300 LEU ALA GLY PHE THR SER GLY GLU GLY SER PHE GLY VAL SEQRES 15 A 300 ASN LEU ILE LYS SER LYS SER LYS LEU GLY VAL GLN VAL SEQRES 16 A 300 GLN LEU ARG PHE ARG ILE THR GLN HIS ILE LYS ASP LYS SEQRES 17 A 300 ASN LEU MET ASN SER LEU ILE THR TYR LEU GLY CYS GLY SEQRES 18 A 300 TYR ILE ALA GLU THR ASN LYS SER GLU PHE SER TRP LEU SEQRES 19 A 300 GLN PHE VAL VAL THR LYS PHE SER ASP ILE ASN ASP LYS SEQRES 20 A 300 ILE ILE PRO VAL PHE GLN GLU ASN THR LEU ILE GLY VAL SEQRES 21 A 300 LYS LEU GLU ASP PHE GLU ASP TRP CYS LYS VAL ALA LYS SEQRES 22 A 300 LEU ILE GLU GLU LYS LYS HIS LEU THR GLU SER GLY LEU SEQRES 23 A 300 ASP GLU ILE LYS LYS ILE LYS LEU ASN MET ASN LYS GLY SEQRES 24 A 300 ARG SEQRES 1 B 26 DG DG DG DT DT DT DC DC DA DC DT DT DA SEQRES 2 B 26 DT DT DC DA DC DG DG DT DT DT DT DA DG SEQRES 1 C 26 DC DC DT DA DA DA DA DC DC DG DT DG DA SEQRES 2 C 26 DA DT DA DA DG DT DG DG DA DA DA DC DC SEQRES 1 D 300 MET ALA SER SER ARG ARG GLU SER ILE ASN PRO TRP ILE SEQRES 2 D 300 LEU THR GLY PHE ALA ASP ALA GLU GLY SER PHE LEU LEU SEQRES 3 D 300 ARG ILE ARG ASN ASN ASN LYS SER SER VAL GLY TYR SER SEQRES 4 D 300 THR GLU LEU GLY PHE GLN ILE THR LEU HIS ASN LYS ASP SEQRES 5 D 300 LYS SER ILE LEU GLU ASN ILE GLN SER THR TRP LYS VAL SEQRES 6 D 300 GLY VAL ILE ALA ASN SER GLY ASP ASN ALA VAL SER LEU SEQRES 7 D 300 LYS VAL THR ARG PHE GLU ASP LEU LYS VAL ILE ILE ASP SEQRES 8 D 300 HIS PHE GLU LYS TYR PRO LEU ILE THR GLN LYS LEU GLY SEQRES 9 D 300 ASP TYR LYS LEU PHE LYS GLN ALA PHE SER VAL MET GLU SEQRES 10 D 300 ASN LYS GLU HIS LEU LYS GLU ASN GLY ILE LYS GLU LEU SEQRES 11 D 300 VAL ARG ILE LYS ALA LYS LEU ASN TRP GLY LEU THR ASP SEQRES 12 D 300 GLU LEU LYS LYS ALA PHE PRO GLU ASN ILE SER LYS GLU SEQRES 13 D 300 ARG SER LEU ILE ASN LYS ASN ILE PRO ASN PHE LYS TRP SEQRES 14 D 300 LEU ALA GLY PHE THR SER GLY GLU GLY SER PHE GLY VAL SEQRES 15 D 300 ASN LEU ILE LYS SER LYS SER LYS LEU GLY VAL GLN VAL SEQRES 16 D 300 GLN LEU ARG PHE ARG ILE THR GLN HIS ILE LYS ASP LYS SEQRES 17 D 300 ASN LEU MET ASN SER LEU ILE THR TYR LEU GLY CYS GLY SEQRES 18 D 300 TYR ILE ALA GLU THR ASN LYS SER GLU PHE SER TRP LEU SEQRES 19 D 300 GLN PHE VAL VAL THR LYS PHE SER ASP ILE ASN ASP LYS SEQRES 20 D 300 ILE ILE PRO VAL PHE GLN GLU ASN THR LEU ILE GLY VAL SEQRES 21 D 300 LYS LEU GLU ASP PHE GLU ASP TRP CYS LYS VAL ALA LYS SEQRES 22 D 300 LEU ILE GLU GLU LYS LYS HIS LEU THR GLU SER GLY LEU SEQRES 23 D 300 ASP GLU ILE LYS LYS ILE LYS LEU ASN MET ASN LYS GLY SEQRES 24 D 300 ARG SEQRES 1 E 26 DG DG DG DT DT DT DC DC DA DC DT DT DA SEQRES 2 E 26 DT DT DC DA DC DG DG DT DT DT DT DA DG SEQRES 1 F 26 DC DC DT DA DA DA DA DC DC DG DT DG DA SEQRES 2 F 26 DA DT DA DA DG DT DG DG DA DA DA DC DC HET CA A 401 1 HET CA B 101 1 HETNAM CA CALCIUM ION FORMUL 7 CA 2(CA 2+) FORMUL 9 HOH *9(H2 O) HELIX 1 AA1 ASN A 11 GLU A 22 1 12 HELIX 2 AA2 HIS A 50 LYS A 52 5 3 HELIX 3 AA3 ASP A 53 LYS A 65 1 13 HELIX 4 AA4 ARG A 83 TYR A 97 1 15 HELIX 5 AA5 LYS A 103 ASN A 119 1 17 HELIX 6 AA6 LYS A 120 LEU A 123 5 4 HELIX 7 AA7 LYS A 124 LEU A 138 1 15 HELIX 8 AA8 THR A 143 PHE A 150 1 8 HELIX 9 AA9 ASN A 167 GLU A 178 1 12 HELIX 10 AB1 HIS A 205 LYS A 207 5 3 HELIX 11 AB2 ASP A 208 GLY A 220 1 13 HELIX 12 AB3 LYS A 241 ILE A 249 1 9 HELIX 13 AB4 ILE A 249 ASN A 256 1 8 HELIX 14 AB5 GLY A 260 GLU A 278 1 19 HELIX 15 AB6 LYS A 279 LEU A 282 5 4 HELIX 16 AB7 THR A 283 ASN A 296 1 14 HELIX 17 AB8 MET A 297 ARG A 301 5 5 HELIX 18 AB9 ASN D 11 GLU D 22 1 12 HELIX 19 AC1 HIS D 50 LYS D 52 5 3 HELIX 20 AC2 ASP D 53 LYS D 65 1 13 HELIX 21 AC3 ARG D 83 TYR D 97 1 15 HELIX 22 AC4 LYS D 103 LYS D 111 1 9 HELIX 23 AC5 GLN D 112 ASN D 119 1 8 HELIX 24 AC6 LYS D 120 LEU D 123 5 4 HELIX 25 AC7 LYS D 124 LEU D 138 1 15 HELIX 26 AC8 THR D 143 PHE D 150 1 8 HELIX 27 AC9 ASN D 167 GLU D 178 1 12 HELIX 28 AD1 ASP D 208 LEU D 219 1 12 HELIX 29 AD2 LYS D 241 ILE D 249 1 9 HELIX 30 AD3 ILE D 249 ASN D 256 1 8 HELIX 31 AD4 GLY D 260 GLU D 278 1 19 HELIX 32 AD5 LYS D 279 LEU D 282 5 4 HELIX 33 AD6 THR D 283 ASN D 296 1 14 HELIX 34 AD7 MET D 297 ARG D 301 5 5 SHEET 1 AA1 4 GLY A 23 ASN A 31 0 SHEET 2 AA1 4 TYR A 39 LEU A 49 -1 O GLN A 46 N SER A 24 SHEET 3 AA1 4 VAL A 77 VAL A 81 -1 O VAL A 77 N LEU A 49 SHEET 4 AA1 4 VAL A 68 ASN A 71 -1 N VAL A 68 O LYS A 80 SHEET 1 AA2 4 GLY A 179 LEU A 185 0 SHEET 2 AA2 4 VAL A 196 THR A 203 -1 O GLN A 197 N ASN A 184 SHEET 3 AA2 4 GLN A 236 VAL A 238 -1 O PHE A 237 N ILE A 202 SHEET 4 AA2 4 TYR A 223 ALA A 225 -1 N TYR A 223 O VAL A 238 SHEET 1 AA3 4 GLY D 23 ASN D 31 0 SHEET 2 AA3 4 TYR D 39 LEU D 49 -1 O GLN D 46 N SER D 24 SHEET 3 AA3 4 VAL D 77 VAL D 81 -1 O VAL D 77 N LEU D 49 SHEET 4 AA3 4 VAL D 68 ASN D 71 -1 N VAL D 68 O LYS D 80 SHEET 1 AA4 4 GLY D 179 ILE D 186 0 SHEET 2 AA4 4 GLN D 195 GLN D 204 -1 O GLN D 195 N ILE D 186 SHEET 3 AA4 4 LEU D 235 VAL D 238 -1 O LEU D 235 N GLN D 204 SHEET 4 AA4 4 TYR D 223 ILE D 224 -1 N TYR D 223 O VAL D 238 LINK O ALA A 21 CA CA A 401 1555 1555 2.76 LINK OE2 GLU A 22 CA CA B 101 1555 1555 2.61 LINK O GLY A 177 CA CA B 101 1555 1555 2.71 LINK OE2 GLU A 178 CA CA A 401 1555 1555 2.58 LINK CA CA A 401 O HOH A 502 1555 1555 2.56 LINK CA CA A 401 OP1 DC B 16 1555 1555 2.83 LINK CA CA A 401 OP2 DA C 16 1555 1555 2.94 LINK OP2 DA B 17 CA CA B 101 1555 1555 2.52 LINK CA CA B 101 OP1 DT C 15 1555 1555 2.48 CRYST1 327.795 40.472 78.235 90.00 94.01 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003051 0.000000 0.000214 0.00000 SCALE2 0.000000 0.024708 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012813 0.00000 CONECT 106 6026 CONECT 116 6027 CONECT 1182 6027 CONECT 1191 6026 CONECT 2277 6026 CONECT 2297 6027 CONECT 2787 6027 CONECT 2808 6026 CONECT 6026 106 1191 2277 2808 CONECT 6026 6029 CONECT 6027 116 1182 2297 2787 CONECT 6029 6026 MASTER 551 0 2 34 16 0 0 6 6030 6 12 56 END