data_9QCD # _entry.id 9QCD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.409 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9QCD pdb_00009qcd 10.2210/pdb9qcd/pdb WWPDB D_1292145923 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-12-31 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9QCD _pdbx_database_status.recvd_initial_deposition_date 2025-03-04 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email stubbs@biochemtech.uni-halle.de _pdbx_contact_author.name_first Milton _pdbx_contact_author.name_last Stubbs _pdbx_contact_author.name_mi T _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-1278-9013 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Machner, L.' 1 0009-0001-6773-8320 'Shaikhqasem, A.' 2 0000-0002-5879-5585 'Hamdi, F.' 3 0000-0002-2155-5000 'Breithaupt, C.' 4 0009-0004-4780-3756 'Parthier, C.' 5 0000-0001-7740-8117 'Kyrilis, F.L.' 6 0000-0002-4040-6289 'Kastritis, P.L.' 7 0000-0002-1463-8422 'Feller, S.M.' 8 0000-0002-9685-6772 'Stubbs, M.T.' 9 0000-0003-1278-9013 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_patent _citation.unpublished_flag ? ? ? ? ? ? ? UK ? ? primary Structure STRUE6 2005 0969-2126 ? ? ? ? ? ? 'Mechanism of SHP2 activation by bis-Tyr-phosphorylated Gab1' 2025 ? 10.1016/j.str.2025.11.018 ? ? ? ? ? ? ? ? ? ? US ? ? 1 'Acta Crystallogr.,Sect.D' ABCRE6 ? 1399-0047 ? ? 82 ? ? ? 'Strategies for mitigating radiation damage and improving data completeness in 3D electron diffraction of protein crystals' 2026 ? 10.1107/S2059798325011258 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Machner, L.' 1 ? primary 'Shaikhqasem, A.' 2 ? primary 'Gruber, T.' 3 ? primary 'Hamdi, F.' 4 ? primary 'Breithaupt, C.' 5 ? primary 'Kniest, J.' 6 ? primary 'Wiebe, F.' 7 ? primary 'Lewitzky, M.' 8 ? primary 'Parthier, C.' 9 ? primary 'Kyrilis, F.L.' 10 ? primary 'Balbach, J.' 11 ? primary 'Kastritis, P.L.' 12 ? primary 'Feller, S.M.' 13 ? primary 'Stubbs, M.T.' 14 ? 1 'Shaikhqasem, A.' 15 ? 1 'Hamdi, F.' 16 ? 1 'Machner, L.' 17 ? 1 'Parthier, C.' 18 ? 1 'Breithaupt, C.' 19 ? 1 'Kyrilis, F.L.' 20 ? 1 'Feller, S.M.' 21 ? 1 'Kastritis, P.L.' 22 ? 1 'Stubbs, M.T.' 23 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Tyrosine-protein phosphatase non-receptor type 11' 25133.238 1 3.1.3.48 ? ? ? 2 polymer man 'GRB2-associated-binding protein 1' 7707.279 1 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Protein-tyrosine phosphatase 1D,PTP-1D,Protein-tyrosine phosphatase 2C,PTP-2C,SH-PTP2,SHP-2,Shp2,SH-PTP3' 2 'GRB2-associated binder 1,Growth factor receptor bound protein 2-associated protein 1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SMTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQ YYMEHHGQLKEKNGDVIELKYPLNCADPTSERWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGE SNDGKSKVTHVMIRCQELKYDVGGGERFDSLTDLVEHYKKNPMVETLGTVLQLKQPLNTTRIN ; ;SMTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQ YYMEHHGQLKEKNGDVIELKYPLNCADPTSERWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGE SNDGKSKVTHVMIRCQELKYDVGGGERFDSLTDLVEHYKKNPMVETLGTVLQLKQPLNTTRIN ; B ? 2 'polypeptide(L)' no yes 'GPIKPKGDKQVE(PTR)LDLDLDSGKSTPPRKQKSSGSGSSVADERVD(PTR)VVVDQQKTLALKSTREAWTDGRQS' GPIKPKGDKQVEYLDLDLDSGKSTPPRKQKSSGSGSSVADERVDYVVVDQQKTLALKSTREAWTDGRQS C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 THR n 1 4 SER n 1 5 ARG n 1 6 ARG n 1 7 TRP n 1 8 PHE n 1 9 HIS n 1 10 PRO n 1 11 ASN n 1 12 ILE n 1 13 THR n 1 14 GLY n 1 15 VAL n 1 16 GLU n 1 17 ALA n 1 18 GLU n 1 19 ASN n 1 20 LEU n 1 21 LEU n 1 22 LEU n 1 23 THR n 1 24 ARG n 1 25 GLY n 1 26 VAL n 1 27 ASP n 1 28 GLY n 1 29 SER n 1 30 PHE n 1 31 LEU n 1 32 ALA n 1 33 ARG n 1 34 PRO n 1 35 SER n 1 36 LYS n 1 37 SER n 1 38 ASN n 1 39 PRO n 1 40 GLY n 1 41 ASP n 1 42 PHE n 1 43 THR n 1 44 LEU n 1 45 SER n 1 46 VAL n 1 47 ARG n 1 48 ARG n 1 49 ASN n 1 50 GLY n 1 51 ALA n 1 52 VAL n 1 53 THR n 1 54 HIS n 1 55 ILE n 1 56 LYS n 1 57 ILE n 1 58 GLN n 1 59 ASN n 1 60 THR n 1 61 GLY n 1 62 ASP n 1 63 TYR n 1 64 TYR n 1 65 ASP n 1 66 LEU n 1 67 TYR n 1 68 GLY n 1 69 GLY n 1 70 GLU n 1 71 LYS n 1 72 PHE n 1 73 ALA n 1 74 THR n 1 75 LEU n 1 76 ALA n 1 77 GLU n 1 78 LEU n 1 79 VAL n 1 80 GLN n 1 81 TYR n 1 82 TYR n 1 83 MET n 1 84 GLU n 1 85 HIS n 1 86 HIS n 1 87 GLY n 1 88 GLN n 1 89 LEU n 1 90 LYS n 1 91 GLU n 1 92 LYS n 1 93 ASN n 1 94 GLY n 1 95 ASP n 1 96 VAL n 1 97 ILE n 1 98 GLU n 1 99 LEU n 1 100 LYS n 1 101 TYR n 1 102 PRO n 1 103 LEU n 1 104 ASN n 1 105 CYS n 1 106 ALA n 1 107 ASP n 1 108 PRO n 1 109 THR n 1 110 SER n 1 111 GLU n 1 112 ARG n 1 113 TRP n 1 114 PHE n 1 115 HIS n 1 116 GLY n 1 117 HIS n 1 118 LEU n 1 119 SER n 1 120 GLY n 1 121 LYS n 1 122 GLU n 1 123 ALA n 1 124 GLU n 1 125 LYS n 1 126 LEU n 1 127 LEU n 1 128 THR n 1 129 GLU n 1 130 LYS n 1 131 GLY n 1 132 LYS n 1 133 HIS n 1 134 GLY n 1 135 SER n 1 136 PHE n 1 137 LEU n 1 138 VAL n 1 139 ARG n 1 140 GLU n 1 141 SER n 1 142 GLN n 1 143 SER n 1 144 HIS n 1 145 PRO n 1 146 GLY n 1 147 ASP n 1 148 PHE n 1 149 VAL n 1 150 LEU n 1 151 SER n 1 152 VAL n 1 153 ARG n 1 154 THR n 1 155 GLY n 1 156 ASP n 1 157 ASP n 1 158 LYS n 1 159 GLY n 1 160 GLU n 1 161 SER n 1 162 ASN n 1 163 ASP n 1 164 GLY n 1 165 LYS n 1 166 SER n 1 167 LYS n 1 168 VAL n 1 169 THR n 1 170 HIS n 1 171 VAL n 1 172 MET n 1 173 ILE n 1 174 ARG n 1 175 CYS n 1 176 GLN n 1 177 GLU n 1 178 LEU n 1 179 LYS n 1 180 TYR n 1 181 ASP n 1 182 VAL n 1 183 GLY n 1 184 GLY n 1 185 GLY n 1 186 GLU n 1 187 ARG n 1 188 PHE n 1 189 ASP n 1 190 SER n 1 191 LEU n 1 192 THR n 1 193 ASP n 1 194 LEU n 1 195 VAL n 1 196 GLU n 1 197 HIS n 1 198 TYR n 1 199 LYS n 1 200 LYS n 1 201 ASN n 1 202 PRO n 1 203 MET n 1 204 VAL n 1 205 GLU n 1 206 THR n 1 207 LEU n 1 208 GLY n 1 209 THR n 1 210 VAL n 1 211 LEU n 1 212 GLN n 1 213 LEU n 1 214 LYS n 1 215 GLN n 1 216 PRO n 1 217 LEU n 1 218 ASN n 1 219 THR n 1 220 THR n 1 221 ARG n 1 222 ILE n 1 223 ASN n 2 1 GLY n 2 2 PRO n 2 3 ILE n 2 4 LYS n 2 5 PRO n 2 6 LYS n 2 7 GLY n 2 8 ASP n 2 9 LYS n 2 10 GLN n 2 11 VAL n 2 12 GLU n 2 13 PTR n 2 14 LEU n 2 15 ASP n 2 16 LEU n 2 17 ASP n 2 18 LEU n 2 19 ASP n 2 20 SER n 2 21 GLY n 2 22 LYS n 2 23 SER n 2 24 THR n 2 25 PRO n 2 26 PRO n 2 27 ARG n 2 28 LYS n 2 29 GLN n 2 30 LYS n 2 31 SER n 2 32 SER n 2 33 GLY n 2 34 SER n 2 35 GLY n 2 36 SER n 2 37 SER n 2 38 VAL n 2 39 ALA n 2 40 ASP n 2 41 GLU n 2 42 ARG n 2 43 VAL n 2 44 ASP n 2 45 PTR n 2 46 VAL n 2 47 VAL n 2 48 VAL n 2 49 ASP n 2 50 GLN n 2 51 GLN n 2 52 LYS n 2 53 THR n 2 54 LEU n 2 55 ALA n 2 56 LEU n 2 57 LYS n 2 58 SER n 2 59 THR n 2 60 ARG n 2 61 GLU n 2 62 ALA n 2 63 TRP n 2 64 THR n 2 65 ASP n 2 66 GLY n 2 67 ARG n 2 68 GLN n 2 69 SER n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 223 human ? 'PTPN11, PTP2C, SHPTP2' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 69 human ? GAB1 ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 PTR 'L-peptide linking' n O-PHOSPHOTYROSINE PHOSPHONOTYROSINE 'C9 H12 N O6 P' 261.168 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 0 ? ? ? B . n A 1 2 MET 2 1 ? ? ? B . n A 1 3 THR 3 2 ? ? ? B . n A 1 4 SER 4 3 ? ? ? B . n A 1 5 ARG 5 4 ? ? ? B . n A 1 6 ARG 6 5 ? ? ? B . n A 1 7 TRP 7 6 6 TRP TRP B . n A 1 8 PHE 8 7 7 PHE PHE B . n A 1 9 HIS 9 8 8 HIS HIS B . n A 1 10 PRO 10 9 9 PRO PRO B . n A 1 11 ASN 11 10 10 ASN ASN B . n A 1 12 ILE 12 11 11 ILE ILE B . n A 1 13 THR 13 12 12 THR THR B . n A 1 14 GLY 14 13 13 GLY GLY B . n A 1 15 VAL 15 14 14 VAL VAL B . n A 1 16 GLU 16 15 15 GLU GLU B . n A 1 17 ALA 17 16 16 ALA ALA B . n A 1 18 GLU 18 17 17 GLU GLU B . n A 1 19 ASN 19 18 18 ASN ASN B . n A 1 20 LEU 20 19 19 LEU LEU B . n A 1 21 LEU 21 20 20 LEU LEU B . n A 1 22 LEU 22 21 21 LEU LEU B . n A 1 23 THR 23 22 22 THR THR B . n A 1 24 ARG 24 23 23 ARG ARG B . n A 1 25 GLY 25 24 24 GLY GLY B . n A 1 26 VAL 26 25 25 VAL VAL B . n A 1 27 ASP 27 26 26 ASP ASP B . n A 1 28 GLY 28 27 27 GLY GLY B . n A 1 29 SER 29 28 28 SER SER B . n A 1 30 PHE 30 29 29 PHE PHE B . n A 1 31 LEU 31 30 30 LEU LEU B . n A 1 32 ALA 32 31 31 ALA ALA B . n A 1 33 ARG 33 32 32 ARG ARG B . n A 1 34 PRO 34 33 33 PRO PRO B . n A 1 35 SER 35 34 34 SER SER B . n A 1 36 LYS 36 35 35 LYS LYS B . n A 1 37 SER 37 36 36 SER SER B . n A 1 38 ASN 38 37 37 ASN ASN B . n A 1 39 PRO 39 38 38 PRO PRO B . n A 1 40 GLY 40 39 39 GLY GLY B . n A 1 41 ASP 41 40 40 ASP ASP B . n A 1 42 PHE 42 41 41 PHE PHE B . n A 1 43 THR 43 42 42 THR THR B . n A 1 44 LEU 44 43 43 LEU LEU B . n A 1 45 SER 45 44 44 SER SER B . n A 1 46 VAL 46 45 45 VAL VAL B . n A 1 47 ARG 47 46 46 ARG ARG B . n A 1 48 ARG 48 47 47 ARG ARG B . n A 1 49 ASN 49 48 48 ASN ASN B . n A 1 50 GLY 50 49 49 GLY GLY B . n A 1 51 ALA 51 50 50 ALA ALA B . n A 1 52 VAL 52 51 51 VAL VAL B . n A 1 53 THR 53 52 52 THR THR B . n A 1 54 HIS 54 53 53 HIS HIS B . n A 1 55 ILE 55 54 54 ILE ILE B . n A 1 56 LYS 56 55 55 LYS LYS B . n A 1 57 ILE 57 56 56 ILE ILE B . n A 1 58 GLN 58 57 57 GLN GLN B . n A 1 59 ASN 59 58 58 ASN ASN B . n A 1 60 THR 60 59 59 THR THR B . n A 1 61 GLY 61 60 60 GLY GLY B . n A 1 62 ASP 62 61 61 ASP ASP B . n A 1 63 TYR 63 62 62 TYR TYR B . n A 1 64 TYR 64 63 63 TYR TYR B . n A 1 65 ASP 65 64 64 ASP ASP B . n A 1 66 LEU 66 65 65 LEU LEU B . n A 1 67 TYR 67 66 66 TYR TYR B . n A 1 68 GLY 68 67 67 GLY GLY B . n A 1 69 GLY 69 68 68 GLY GLY B . n A 1 70 GLU 70 69 69 GLU GLU B . n A 1 71 LYS 71 70 70 LYS LYS B . n A 1 72 PHE 72 71 71 PHE PHE B . n A 1 73 ALA 73 72 72 ALA ALA B . n A 1 74 THR 74 73 73 THR THR B . n A 1 75 LEU 75 74 74 LEU LEU B . n A 1 76 ALA 76 75 75 ALA ALA B . n A 1 77 GLU 77 76 76 GLU GLU B . n A 1 78 LEU 78 77 77 LEU LEU B . n A 1 79 VAL 79 78 78 VAL VAL B . n A 1 80 GLN 80 79 79 GLN GLN B . n A 1 81 TYR 81 80 80 TYR TYR B . n A 1 82 TYR 82 81 81 TYR TYR B . n A 1 83 MET 83 82 82 MET MET B . n A 1 84 GLU 84 83 83 GLU GLU B . n A 1 85 HIS 85 84 84 HIS HIS B . n A 1 86 HIS 86 85 85 HIS HIS B . n A 1 87 GLY 87 86 86 GLY GLY B . n A 1 88 GLN 88 87 87 GLN GLN B . n A 1 89 LEU 89 88 88 LEU LEU B . n A 1 90 LYS 90 89 89 LYS LYS B . n A 1 91 GLU 91 90 90 GLU GLU B . n A 1 92 LYS 92 91 91 LYS LYS B . n A 1 93 ASN 93 92 92 ASN ASN B . n A 1 94 GLY 94 93 93 GLY GLY B . n A 1 95 ASP 95 94 94 ASP ASP B . n A 1 96 VAL 96 95 95 VAL VAL B . n A 1 97 ILE 97 96 96 ILE ILE B . n A 1 98 GLU 98 97 97 GLU GLU B . n A 1 99 LEU 99 98 98 LEU LEU B . n A 1 100 LYS 100 99 99 LYS LYS B . n A 1 101 TYR 101 100 100 TYR TYR B . n A 1 102 PRO 102 101 101 PRO PRO B . n A 1 103 LEU 103 102 102 LEU LEU B . n A 1 104 ASN 104 103 103 ASN ASN B . n A 1 105 CYS 105 104 104 CYS CYS B . n A 1 106 ALA 106 105 105 ALA ALA B . n A 1 107 ASP 107 106 106 ASP ASP B . n A 1 108 PRO 108 107 107 PRO PRO B . n A 1 109 THR 109 108 108 THR THR B . n A 1 110 SER 110 109 109 SER SER B . n A 1 111 GLU 111 110 110 GLU GLU B . n A 1 112 ARG 112 111 111 ARG ARG B . n A 1 113 TRP 113 112 112 TRP TRP B . n A 1 114 PHE 114 113 113 PHE PHE B . n A 1 115 HIS 115 114 114 HIS HIS B . n A 1 116 GLY 116 115 115 GLY GLY B . n A 1 117 HIS 117 116 116 HIS HIS B . n A 1 118 LEU 118 117 117 LEU LEU B . n A 1 119 SER 119 118 118 SER SER B . n A 1 120 GLY 120 119 119 GLY GLY B . n A 1 121 LYS 121 120 120 LYS LYS B . n A 1 122 GLU 122 121 121 GLU GLU B . n A 1 123 ALA 123 122 122 ALA ALA B . n A 1 124 GLU 124 123 123 GLU GLU B . n A 1 125 LYS 125 124 124 LYS LYS B . n A 1 126 LEU 126 125 125 LEU LEU B . n A 1 127 LEU 127 126 126 LEU LEU B . n A 1 128 THR 128 127 127 THR THR B . n A 1 129 GLU 129 128 128 GLU GLU B . n A 1 130 LYS 130 129 129 LYS LYS B . n A 1 131 GLY 131 130 130 GLY GLY B . n A 1 132 LYS 132 131 131 LYS LYS B . n A 1 133 HIS 133 132 132 HIS HIS B . n A 1 134 GLY 134 133 133 GLY GLY B . n A 1 135 SER 135 134 134 SER SER B . n A 1 136 PHE 136 135 135 PHE PHE B . n A 1 137 LEU 137 136 136 LEU LEU B . n A 1 138 VAL 138 137 137 VAL VAL B . n A 1 139 ARG 139 138 138 ARG ARG B . n A 1 140 GLU 140 139 139 GLU GLU B . n A 1 141 SER 141 140 140 SER SER B . n A 1 142 GLN 142 141 141 GLN GLN B . n A 1 143 SER 143 142 142 SER SER B . n A 1 144 HIS 144 143 143 HIS HIS B . n A 1 145 PRO 145 144 144 PRO PRO B . n A 1 146 GLY 146 145 145 GLY GLY B . n A 1 147 ASP 147 146 146 ASP ASP B . n A 1 148 PHE 148 147 147 PHE PHE B . n A 1 149 VAL 149 148 148 VAL VAL B . n A 1 150 LEU 150 149 149 LEU LEU B . n A 1 151 SER 151 150 150 SER SER B . n A 1 152 VAL 152 151 151 VAL VAL B . n A 1 153 ARG 153 152 152 ARG ARG B . n A 1 154 THR 154 153 153 THR THR B . n A 1 155 GLY 155 154 ? ? ? B . n A 1 156 ASP 156 155 ? ? ? B . n A 1 157 ASP 157 156 ? ? ? B . n A 1 158 LYS 158 157 ? ? ? B . n A 1 159 GLY 159 158 ? ? ? B . n A 1 160 GLU 160 159 ? ? ? B . n A 1 161 SER 161 160 ? ? ? B . n A 1 162 ASN 162 161 ? ? ? B . n A 1 163 ASP 163 162 ? ? ? B . n A 1 164 GLY 164 163 ? ? ? B . n A 1 165 LYS 165 164 164 LYS LYS B . n A 1 166 SER 166 165 165 SER SER B . n A 1 167 LYS 167 166 166 LYS LYS B . n A 1 168 VAL 168 167 167 VAL VAL B . n A 1 169 THR 169 168 168 THR THR B . n A 1 170 HIS 170 169 169 HIS HIS B . n A 1 171 VAL 171 170 170 VAL VAL B . n A 1 172 MET 172 171 171 MET MET B . n A 1 173 ILE 173 172 172 ILE ILE B . n A 1 174 ARG 174 173 173 ARG ARG B . n A 1 175 CYS 175 174 174 CYS CYS B . n A 1 176 GLN 176 175 175 GLN GLN B . n A 1 177 GLU 177 176 176 GLU GLU B . n A 1 178 LEU 178 177 177 LEU LEU B . n A 1 179 LYS 179 178 178 LYS LYS B . n A 1 180 TYR 180 179 179 TYR TYR B . n A 1 181 ASP 181 180 180 ASP ASP B . n A 1 182 VAL 182 181 181 VAL VAL B . n A 1 183 GLY 183 182 182 GLY GLY B . n A 1 184 GLY 184 183 183 GLY GLY B . n A 1 185 GLY 185 184 184 GLY GLY B . n A 1 186 GLU 186 185 185 GLU GLU B . n A 1 187 ARG 187 186 186 ARG ARG B . n A 1 188 PHE 188 187 187 PHE PHE B . n A 1 189 ASP 189 188 188 ASP ASP B . n A 1 190 SER 190 189 189 SER SER B . n A 1 191 LEU 191 190 190 LEU LEU B . n A 1 192 THR 192 191 191 THR THR B . n A 1 193 ASP 193 192 192 ASP ASP B . n A 1 194 LEU 194 193 193 LEU LEU B . n A 1 195 VAL 195 194 194 VAL VAL B . n A 1 196 GLU 196 195 195 GLU GLU B . n A 1 197 HIS 197 196 196 HIS HIS B . n A 1 198 TYR 198 197 197 TYR TYR B . n A 1 199 LYS 199 198 198 LYS LYS B . n A 1 200 LYS 200 199 199 LYS LYS B . n A 1 201 ASN 201 200 200 ASN ASN B . n A 1 202 PRO 202 201 201 PRO PRO B . n A 1 203 MET 203 202 202 MET MET B . n A 1 204 VAL 204 203 203 VAL VAL B . n A 1 205 GLU 205 204 204 GLU GLU B . n A 1 206 THR 206 205 205 THR THR B . n A 1 207 LEU 207 206 206 LEU LEU B . n A 1 208 GLY 208 207 207 GLY GLY B . n A 1 209 THR 209 208 208 THR THR B . n A 1 210 VAL 210 209 209 VAL VAL B . n A 1 211 LEU 211 210 210 LEU LEU B . n A 1 212 GLN 212 211 211 GLN GLN B . n A 1 213 LEU 213 212 212 LEU LEU B . n A 1 214 LYS 214 213 213 LYS LYS B . n A 1 215 GLN 215 214 214 GLN GLN B . n A 1 216 PRO 216 215 215 PRO PRO B . n A 1 217 LEU 217 216 216 LEU LEU B . n A 1 218 ASN 218 217 217 ASN ASN B . n A 1 219 THR 219 218 218 THR THR B . n A 1 220 THR 220 219 219 THR THR B . n A 1 221 ARG 221 220 220 ARG ARG B . n A 1 222 ILE 222 221 221 ILE ILE B . n A 1 223 ASN 223 222 ? ? ? B . n B 2 1 GLY 1 615 ? ? ? C . n B 2 2 PRO 2 616 ? ? ? C . n B 2 3 ILE 3 617 ? ? ? C . n B 2 4 LYS 4 618 ? ? ? C . n B 2 5 PRO 5 619 ? ? ? C . n B 2 6 LYS 6 620 ? ? ? C . n B 2 7 GLY 7 621 ? ? ? C . n B 2 8 ASP 8 622 ? ? ? C . n B 2 9 LYS 9 623 ? ? ? C . n B 2 10 GLN 10 624 624 GLN GLN C . n B 2 11 VAL 11 625 625 VAL VAL C . n B 2 12 GLU 12 626 626 GLU GLU C . n B 2 13 PTR 13 627 627 PTR PTR C . n B 2 14 LEU 14 628 628 LEU LEU C . n B 2 15 ASP 15 629 629 ASP ASP C . n B 2 16 LEU 16 630 630 LEU LEU C . n B 2 17 ASP 17 631 631 ASP ASP C . n B 2 18 LEU 18 632 632 LEU LEU C . n B 2 19 ASP 19 633 633 ASP ASP C . n B 2 20 SER 20 634 634 SER SER C . n B 2 21 GLY 21 635 ? ? ? C . n B 2 22 LYS 22 636 ? ? ? C . n B 2 23 SER 23 637 ? ? ? C . n B 2 24 THR 24 638 ? ? ? C . n B 2 25 PRO 25 639 ? ? ? C . n B 2 26 PRO 26 640 ? ? ? C . n B 2 27 ARG 27 641 ? ? ? C . n B 2 28 LYS 28 642 ? ? ? C . n B 2 29 GLN 29 643 ? ? ? C . n B 2 30 LYS 30 644 ? ? ? C . n B 2 31 SER 31 645 ? ? ? C . n B 2 32 SER 32 646 ? ? ? C . n B 2 33 GLY 33 647 ? ? ? C . n B 2 34 SER 34 648 ? ? ? C . n B 2 35 GLY 35 649 ? ? ? C . n B 2 36 SER 36 650 ? ? ? C . n B 2 37 SER 37 651 ? ? ? C . n B 2 38 VAL 38 652 ? ? ? C . n B 2 39 ALA 39 653 653 ALA ALA C . n B 2 40 ASP 40 654 654 ASP ASP C . n B 2 41 GLU 41 655 655 GLU GLU C . n B 2 42 ARG 42 656 656 ARG ARG C . n B 2 43 VAL 43 657 657 VAL VAL C . n B 2 44 ASP 44 658 658 ASP ASP C . n B 2 45 PTR 45 659 659 PTR PTR C . n B 2 46 VAL 46 660 660 VAL VAL C . n B 2 47 VAL 47 661 661 VAL VAL C . n B 2 48 VAL 48 662 662 VAL VAL C . n B 2 49 ASP 49 663 663 ASP ASP C . n B 2 50 GLN 50 664 664 GLN GLN C . n B 2 51 GLN 51 665 665 GLN GLN C . n B 2 52 LYS 52 666 666 LYS LYS C . n B 2 53 THR 53 667 667 THR THR C . n B 2 54 LEU 54 668 668 LEU LEU C . n B 2 55 ALA 55 669 669 ALA ALA C . n B 2 56 LEU 56 670 670 LEU LEU C . n B 2 57 LYS 57 671 671 LYS LYS C . n B 2 58 SER 58 672 672 SER SER C . n B 2 59 THR 59 673 673 THR THR C . n B 2 60 ARG 60 674 674 ARG ARG C . n B 2 61 GLU 61 675 675 GLU GLU C . n B 2 62 ALA 62 676 676 ALA ALA C . n B 2 63 TRP 63 677 ? ? ? C . n B 2 64 THR 64 678 ? ? ? C . n B 2 65 ASP 65 679 ? ? ? C . n B 2 66 GLY 66 680 ? ? ? C . n B 2 67 ARG 67 681 ? ? ? C . n B 2 68 GLN 68 682 ? ? ? C . n B 2 69 SER 69 683 ? ? ? C . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id PTR _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id PTR _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.dependencies ? _software.description ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.pdbx_ordinal 1 _software.pdbx_reference_DOI ? _software.type ? _software.version 1.20.1_4487 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 9QCD _cell.details ? _cell.formula_units_Z ? _cell.length_a 30.595 _cell.length_a_esd ? _cell.length_b 82.253 _cell.length_b_esd ? _cell.length_c 117.764 _cell.length_c_esd ? _cell.volume 296356.702 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9QCD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9QCD _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON CRYSTALLOGRAPHY' _exptl.method_details ? # _reflns.B_iso_Wilson_estimate 62.54 _reflns.entry_id 9QCD _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.2 _reflns.d_resolution_low 33.7 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 4729 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 88.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 11.9 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 3.29 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.802 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 56190 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.94 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.d_res_high 3.2 _reflns_shell.d_res_low 4.03 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_sigI_obs 1.41 _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_gt ? _reflns_shell.number_measured_obs 9163 _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_gt ? _reflns_shell.number_unique_obs 744 _reflns_shell.pdbx_CC_half 0.53 _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all 2.20 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_percent_possible_anomalous ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy 12.3 _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_rejects ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_gt ? _reflns_shell.percent_possible_obs 89.7 # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 51.51 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ;Crystallographic refinement was performed using - a riding hydrogen model - electron scattering factors in PHENIX (version 1.20.1_4487) ; _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9QCD _refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.20 _refine.ls_d_res_low 33.72 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 4725 _refine.ls_number_reflns_R_free 238 _refine.ls_number_reflns_R_work 4487 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 88.87 _refine.ls_percent_reflns_R_free 5.04 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.3032 _refine.ls_R_factor_R_free 0.3527 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.3005 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 29.5157 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.4085 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON CRYSTALLOGRAPHY' ? 0.0030 ? 1968 ? f_bond_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.6477 ? 2658 ? f_angle_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.0411 ? 293 ? f_chiral_restr ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.0053 ? 341 ? f_plane_restr ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 15.0428 ? 746 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'ELECTRON CRYSTALLOGRAPHY' 3.20 4.03 . . 122 2194 89.59 . . . . 0.3352 . . . . . . . . . . . . . . . 0.3623 'ELECTRON CRYSTALLOGRAPHY' 4.03 33.72 . . 116 2293 88.18 . . . . 0.2812 . . . . . . . . . . . . . . . 0.3470 # _struct.entry_id 9QCD _struct.title 'Micro-ED structure of the NSH2-CSH2 tandem domain of SHP2 in complex with the bis-phosphorylated pY627-pY659-Gab1 (613-694) peptide' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9QCD _struct_keywords.text 'SH2-domain, phosphatase, PTPN11, phospho-tyrosine, SIGNALING PROTEIN' _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP PTN11_HUMAN Q06124 ? 1 ;MTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQY YMEHHGQLKEKNGDVIELKYPLNCADPTSERWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGES NDGKSKVTHVMIRCQELKYDVGGGERFDSLTDLVEHYKKNPMVETLGTVLQLKQPLNTTRIN ; 1 2 UNP GAB1_HUMAN Q13480 ? 2 IKPKGDKQVEYLDLDLDSGKSTPPRKQKSSGSGSSVADERVDYVVVDQQKTLALKSTREAWTDGRQS 617 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9QCD B 2 ? 223 ? Q06124 1 ? 222 ? 1 222 2 2 9QCD C 3 ? 69 ? Q13480 617 ? 683 ? 617 683 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9QCD SER B 1 ? UNP Q06124 ? ? 'expression tag' 0 1 2 9QCD GLY C 1 ? UNP Q13480 ? ? 'expression tag' 615 2 2 9QCD PRO C 2 ? UNP Q13480 ? ? 'expression tag' 616 3 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3070 ? 1 MORE -23 ? 1 'SSA (A^2)' 13540 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'isothermal titration calorimetry' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 13 ? ARG A 24 ? THR B 12 ARG B 23 1 ? 12 HELX_P HELX_P2 AA2 THR A 74 ? HIS A 85 ? THR B 73 HIS B 84 1 ? 12 HELX_P HELX_P3 AA3 SER A 119 ? GLY A 131 ? SER B 118 GLY B 130 1 ? 13 HELX_P HELX_P4 AA4 SER A 190 ? ASN A 201 ? SER B 189 ASN B 200 1 ? 12 HELX_P HELX_P5 AA5 ASP B 49 ? ALA B 62 ? ASP C 663 ALA C 676 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B GLU 12 C ? ? ? 1_555 B PTR 13 N ? ? C GLU 626 C PTR 627 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale2 covale both ? B PTR 13 C ? ? ? 1_555 B LEU 14 N ? ? C PTR 627 C LEU 628 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale3 covale both ? B ASP 44 C ? ? ? 1_555 B PTR 45 N ? ? C ASP 658 C PTR 659 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale4 covale both ? B PTR 45 C ? ? ? 1_555 B VAL 46 N ? ? C PTR 659 C VAL 660 1_555 ? ? ? ? ? ? ? 1.328 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 PTR B 13 ? . . . . PTR C 627 ? 1_555 . . . . . . . TYR 1 PTR Phosphorylation 'Named protein modification' 2 PTR B 45 ? . . . . PTR C 659 ? 1_555 . . . . . . . TYR 1 PTR Phosphorylation 'Named protein modification' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 2 ? AA3 ? 5 ? AA4 ? 3 ? AA5 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? parallel AA4 1 2 ? anti-parallel AA4 2 3 ? parallel AA5 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TYR A 64 ? ASP A 65 ? TYR B 63 ASP B 64 AA1 2 ALA A 51 ? ASN A 59 ? ALA B 50 ASN B 58 AA1 3 PHE A 42 ? ARG A 48 ? PHE B 41 ARG B 47 AA1 4 SER A 29 ? PRO A 34 ? SER B 28 PRO B 33 AA1 5 TYR A 101 ? PRO A 102 ? TYR B 100 PRO B 101 AA2 1 LYS A 90 ? GLU A 91 ? LYS B 89 GLU B 90 AA2 2 LEU B 16 ? ASP B 17 ? LEU C 630 ASP C 631 AA3 1 LYS A 179 ? ASP A 181 ? LYS B 178 ASP B 180 AA3 2 VAL A 168 ? GLN A 176 ? VAL B 167 GLN B 175 AA3 3 PHE A 148 ? ARG A 153 ? PHE B 147 ARG B 152 AA3 4 SER A 135 ? GLU A 140 ? SER B 134 GLU B 139 AA3 5 GLN A 215 ? PRO A 216 ? GLN B 214 PRO B 215 AA4 1 LYS A 179 ? ASP A 181 ? LYS B 178 ASP B 180 AA4 2 VAL A 168 ? GLN A 176 ? VAL B 167 GLN B 175 AA4 3 PTR B 45 ? VAL B 46 ? PTR C 659 VAL C 660 AA5 1 MET A 203 ? VAL A 204 ? MET B 202 VAL B 203 AA5 2 VAL A 210 ? LEU A 211 ? VAL B 209 LEU B 210 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O ASP A 65 ? O ASP B 64 N GLN A 58 ? N GLN B 57 AA1 2 3 O ALA A 51 ? O ALA B 50 N ARG A 48 ? N ARG B 47 AA1 3 4 O THR A 43 ? O THR B 42 N ARG A 33 ? N ARG B 32 AA1 4 5 N PHE A 30 ? N PHE B 29 O TYR A 101 ? O TYR B 100 AA2 1 2 N LYS A 90 ? N LYS B 89 O ASP B 17 ? O ASP C 631 AA3 1 2 O ASP A 181 ? O ASP B 180 N ARG A 174 ? N ARG B 173 AA3 2 3 O THR A 169 ? O THR B 168 N VAL A 152 ? N VAL B 151 AA3 3 4 O ARG A 153 ? O ARG B 152 N SER A 135 ? N SER B 134 AA3 4 5 N PHE A 136 ? N PHE B 135 O GLN A 215 ? O GLN B 214 AA4 1 2 O ASP A 181 ? O ASP B 180 N ARG A 174 ? N ARG B 173 AA4 2 3 N HIS A 170 ? N HIS B 169 O VAL B 46 ? O VAL C 660 AA5 1 2 N MET A 203 ? N MET B 202 O LEU A 211 ? O LEU B 210 # _pdbx_entry_details.entry_id 9QCD _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU B 65 ? ? -94.76 48.12 2 1 LYS B 99 ? ? -123.06 -64.79 3 1 GLU B 128 ? ? -130.70 -34.89 4 1 THR B 219 ? ? -90.21 -64.49 5 1 GLU C 626 ? ? -107.59 68.06 6 1 ASP C 633 ? ? 60.58 64.55 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B PTR 13 C PTR 627 ? TYR 'modified residue' 2 B PTR 45 C PTR 659 ? TYR 'modified residue' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/2,-y+1/2,-z 3 -x,y+1/2,-z+1/2 4 -x+1/2,-y,z+1/2 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9QCD _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9QCD _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.2 _em_3d_reconstruction.resolution_method OTHER _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type '3D CRYSTAL' # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 8.8 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'NSH2-CSH2 tandem domain of SHP2 in complex with the bis-phosphorylated pY627-pY659-Gab1 (613-694) peptide' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list '1, 2' # _em_imaging.entry_id 9QCD _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS GLACIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 200 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode DIFFRACTION _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 0 _em_imaging.nominal_defocus_max 0 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 9QCD _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9QCD _em_experiment.id 1 _em_experiment.reconstruction_method CRYSTALLOGRAPHY _em_experiment.aggregation_state '3D ARRAY' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B SER 0 ? A SER 1 2 1 Y 1 B MET 1 ? A MET 2 3 1 Y 1 B THR 2 ? A THR 3 4 1 Y 1 B SER 3 ? A SER 4 5 1 Y 1 B ARG 4 ? A ARG 5 6 1 Y 1 B ARG 5 ? A ARG 6 7 1 Y 1 B GLY 154 ? A GLY 155 8 1 Y 1 B ASP 155 ? A ASP 156 9 1 Y 1 B ASP 156 ? A ASP 157 10 1 Y 1 B LYS 157 ? A LYS 158 11 1 Y 1 B GLY 158 ? A GLY 159 12 1 Y 1 B GLU 159 ? A GLU 160 13 1 Y 1 B SER 160 ? A SER 161 14 1 Y 1 B ASN 161 ? A ASN 162 15 1 Y 1 B ASP 162 ? A ASP 163 16 1 Y 1 B GLY 163 ? A GLY 164 17 1 Y 1 B ASN 222 ? A ASN 223 18 1 Y 1 C GLY 615 ? B GLY 1 19 1 Y 1 C PRO 616 ? B PRO 2 20 1 Y 1 C ILE 617 ? B ILE 3 21 1 Y 1 C LYS 618 ? B LYS 4 22 1 Y 1 C PRO 619 ? B PRO 5 23 1 Y 1 C LYS 620 ? B LYS 6 24 1 Y 1 C GLY 621 ? B GLY 7 25 1 Y 1 C ASP 622 ? B ASP 8 26 1 Y 1 C LYS 623 ? B LYS 9 27 1 Y 1 C GLY 635 ? B GLY 21 28 1 Y 1 C LYS 636 ? B LYS 22 29 1 Y 1 C SER 637 ? B SER 23 30 1 Y 1 C THR 638 ? B THR 24 31 1 Y 1 C PRO 639 ? B PRO 25 32 1 Y 1 C PRO 640 ? B PRO 26 33 1 Y 1 C ARG 641 ? B ARG 27 34 1 Y 1 C LYS 642 ? B LYS 28 35 1 Y 1 C GLN 643 ? B GLN 29 36 1 Y 1 C LYS 644 ? B LYS 30 37 1 Y 1 C SER 645 ? B SER 31 38 1 Y 1 C SER 646 ? B SER 32 39 1 Y 1 C GLY 647 ? B GLY 33 40 1 Y 1 C SER 648 ? B SER 34 41 1 Y 1 C GLY 649 ? B GLY 35 42 1 Y 1 C SER 650 ? B SER 36 43 1 Y 1 C SER 651 ? B SER 37 44 1 Y 1 C VAL 652 ? B VAL 38 45 1 Y 1 C TRP 677 ? B TRP 63 46 1 Y 1 C THR 678 ? B THR 64 47 1 Y 1 C ASP 679 ? B ASP 65 48 1 Y 1 C GLY 680 ? B GLY 66 49 1 Y 1 C ARG 681 ? B ARG 67 50 1 Y 1 C GLN 682 ? B GLN 68 51 1 Y 1 C SER 683 ? B SER 69 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 PTR N N N N 287 PTR CA C N S 288 PTR C C N N 289 PTR O O N N 290 PTR OXT O N N 291 PTR CB C N N 292 PTR CG C Y N 293 PTR CD1 C Y N 294 PTR CD2 C Y N 295 PTR CE1 C Y N 296 PTR CE2 C Y N 297 PTR CZ C Y N 298 PTR OH O N N 299 PTR P P N N 300 PTR O1P O N N 301 PTR O2P O N N 302 PTR O3P O N N 303 PTR H H N N 304 PTR H2 H N N 305 PTR HA H N N 306 PTR HXT H N N 307 PTR HB2 H N N 308 PTR HB3 H N N 309 PTR HD1 H N N 310 PTR HD2 H N N 311 PTR HE1 H N N 312 PTR HE2 H N N 313 PTR HO2P H N N 314 PTR HO3P H N N 315 SER N N N N 316 SER CA C N S 317 SER C C N N 318 SER O O N N 319 SER CB C N N 320 SER OG O N N 321 SER OXT O N N 322 SER H H N N 323 SER H2 H N N 324 SER HA H N N 325 SER HB2 H N N 326 SER HB3 H N N 327 SER HG H N N 328 SER HXT H N N 329 THR N N N N 330 THR CA C N S 331 THR C C N N 332 THR O O N N 333 THR CB C N R 334 THR OG1 O N N 335 THR CG2 C N N 336 THR OXT O N N 337 THR H H N N 338 THR H2 H N N 339 THR HA H N N 340 THR HB H N N 341 THR HG1 H N N 342 THR HG21 H N N 343 THR HG22 H N N 344 THR HG23 H N N 345 THR HXT H N N 346 TRP N N N N 347 TRP CA C N S 348 TRP C C N N 349 TRP O O N N 350 TRP CB C N N 351 TRP CG C Y N 352 TRP CD1 C Y N 353 TRP CD2 C Y N 354 TRP NE1 N Y N 355 TRP CE2 C Y N 356 TRP CE3 C Y N 357 TRP CZ2 C Y N 358 TRP CZ3 C Y N 359 TRP CH2 C Y N 360 TRP OXT O N N 361 TRP H H N N 362 TRP H2 H N N 363 TRP HA H N N 364 TRP HB2 H N N 365 TRP HB3 H N N 366 TRP HD1 H N N 367 TRP HE1 H N N 368 TRP HE3 H N N 369 TRP HZ2 H N N 370 TRP HZ3 H N N 371 TRP HH2 H N N 372 TRP HXT H N N 373 TYR N N N N 374 TYR CA C N S 375 TYR C C N N 376 TYR O O N N 377 TYR CB C N N 378 TYR CG C Y N 379 TYR CD1 C Y N 380 TYR CD2 C Y N 381 TYR CE1 C Y N 382 TYR CE2 C Y N 383 TYR CZ C Y N 384 TYR OH O N N 385 TYR OXT O N N 386 TYR H H N N 387 TYR H2 H N N 388 TYR HA H N N 389 TYR HB2 H N N 390 TYR HB3 H N N 391 TYR HD1 H N N 392 TYR HD2 H N N 393 TYR HE1 H N N 394 TYR HE2 H N N 395 TYR HH H N N 396 TYR HXT H N N 397 VAL N N N N 398 VAL CA C N S 399 VAL C C N N 400 VAL O O N N 401 VAL CB C N N 402 VAL CG1 C N N 403 VAL CG2 C N N 404 VAL OXT O N N 405 VAL H H N N 406 VAL H2 H N N 407 VAL HA H N N 408 VAL HB H N N 409 VAL HG11 H N N 410 VAL HG12 H N N 411 VAL HG13 H N N 412 VAL HG21 H N N 413 VAL HG22 H N N 414 VAL HG23 H N N 415 VAL HXT H N N 416 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 PTR N CA sing N N 275 PTR N H sing N N 276 PTR N H2 sing N N 277 PTR CA C sing N N 278 PTR CA CB sing N N 279 PTR CA HA sing N N 280 PTR C O doub N N 281 PTR C OXT sing N N 282 PTR OXT HXT sing N N 283 PTR CB CG sing N N 284 PTR CB HB2 sing N N 285 PTR CB HB3 sing N N 286 PTR CG CD1 doub Y N 287 PTR CG CD2 sing Y N 288 PTR CD1 CE1 sing Y N 289 PTR CD1 HD1 sing N N 290 PTR CD2 CE2 doub Y N 291 PTR CD2 HD2 sing N N 292 PTR CE1 CZ doub Y N 293 PTR CE1 HE1 sing N N 294 PTR CE2 CZ sing Y N 295 PTR CE2 HE2 sing N N 296 PTR CZ OH sing N N 297 PTR OH P sing N N 298 PTR P O1P doub N N 299 PTR P O2P sing N N 300 PTR P O3P sing N N 301 PTR O2P HO2P sing N N 302 PTR O3P HO3P sing N N 303 SER N CA sing N N 304 SER N H sing N N 305 SER N H2 sing N N 306 SER CA C sing N N 307 SER CA CB sing N N 308 SER CA HA sing N N 309 SER C O doub N N 310 SER C OXT sing N N 311 SER CB OG sing N N 312 SER CB HB2 sing N N 313 SER CB HB3 sing N N 314 SER OG HG sing N N 315 SER OXT HXT sing N N 316 THR N CA sing N N 317 THR N H sing N N 318 THR N H2 sing N N 319 THR CA C sing N N 320 THR CA CB sing N N 321 THR CA HA sing N N 322 THR C O doub N N 323 THR C OXT sing N N 324 THR CB OG1 sing N N 325 THR CB CG2 sing N N 326 THR CB HB sing N N 327 THR OG1 HG1 sing N N 328 THR CG2 HG21 sing N N 329 THR CG2 HG22 sing N N 330 THR CG2 HG23 sing N N 331 THR OXT HXT sing N N 332 TRP N CA sing N N 333 TRP N H sing N N 334 TRP N H2 sing N N 335 TRP CA C sing N N 336 TRP CA CB sing N N 337 TRP CA HA sing N N 338 TRP C O doub N N 339 TRP C OXT sing N N 340 TRP CB CG sing N N 341 TRP CB HB2 sing N N 342 TRP CB HB3 sing N N 343 TRP CG CD1 doub Y N 344 TRP CG CD2 sing Y N 345 TRP CD1 NE1 sing Y N 346 TRP CD1 HD1 sing N N 347 TRP CD2 CE2 doub Y N 348 TRP CD2 CE3 sing Y N 349 TRP NE1 CE2 sing Y N 350 TRP NE1 HE1 sing N N 351 TRP CE2 CZ2 sing Y N 352 TRP CE3 CZ3 doub Y N 353 TRP CE3 HE3 sing N N 354 TRP CZ2 CH2 doub Y N 355 TRP CZ2 HZ2 sing N N 356 TRP CZ3 CH2 sing Y N 357 TRP CZ3 HZ3 sing N N 358 TRP CH2 HH2 sing N N 359 TRP OXT HXT sing N N 360 TYR N CA sing N N 361 TYR N H sing N N 362 TYR N H2 sing N N 363 TYR CA C sing N N 364 TYR CA CB sing N N 365 TYR CA HA sing N N 366 TYR C O doub N N 367 TYR C OXT sing N N 368 TYR CB CG sing N N 369 TYR CB HB2 sing N N 370 TYR CB HB3 sing N N 371 TYR CG CD1 doub Y N 372 TYR CG CD2 sing Y N 373 TYR CD1 CE1 sing Y N 374 TYR CD1 HD1 sing N N 375 TYR CD2 CE2 doub Y N 376 TYR CD2 HD2 sing N N 377 TYR CE1 CZ doub Y N 378 TYR CE1 HE1 sing N N 379 TYR CE2 CZ sing Y N 380 TYR CE2 HE2 sing N N 381 TYR CZ OH sing N N 382 TYR OH HH sing N N 383 TYR OXT HXT sing N N 384 VAL N CA sing N N 385 VAL N H sing N N 386 VAL N H2 sing N N 387 VAL CA C sing N N 388 VAL CA CB sing N N 389 VAL CA HA sing N N 390 VAL C O doub N N 391 VAL C OXT sing N N 392 VAL CB CG1 sing N N 393 VAL CB CG2 sing N N 394 VAL CB HB sing N N 395 VAL CG1 HG11 sing N N 396 VAL CG1 HG12 sing N N 397 VAL CG1 HG13 sing N N 398 VAL CG2 HG21 sing N N 399 VAL CG2 HG22 sing N N 400 VAL CG2 HG23 sing N N 401 VAL OXT HXT sing N N 402 # _em_3d_crystal_entity.angle_alpha 90 _em_3d_crystal_entity.angle_beta 90 _em_3d_crystal_entity.angle_gamma 90 _em_3d_crystal_entity.image_processing_id 1 _em_3d_crystal_entity.id 1 _em_3d_crystal_entity.length_a 30.59 _em_3d_crystal_entity.length_b 82.25 _em_3d_crystal_entity.length_c 117.76 _em_3d_crystal_entity.space_group_name P212121 _em_3d_crystal_entity.space_group_num 19 # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_diffraction_shell.em_diffraction_stats_id 1 _em_diffraction_shell.fourier_space_coverage 88.8 _em_diffraction_shell.high_resolution 3.2 _em_diffraction_shell.id 1 _em_diffraction_shell.low_resolution 33.7 _em_diffraction_shell.multiplicity 11.9 _em_diffraction_shell.num_structure_factors 4729 _em_diffraction_shell.phase_residual 0.1 # _em_diffraction_stats.details ;Data Collection Statistics: number of reflections: 56190 (last shell:9163) number of unique reflections: 4729 (last shell:744) R-meas: 0.802 (last shell: 2.20) CC 1/2: 0.94 (last shell: 0.53) : 3.29 (last shell: 1.41) Completeness: 88.8% (last shell: 89.7%) Multiplicity: 11.9 (last shell:12.3) ; _em_diffraction_stats.fourier_space_coverage 88.8 _em_diffraction_stats.high_resolution 3.2 _em_diffraction_stats.id 1 _em_diffraction_stats.image_processing_id 1 _em_diffraction_stats.num_intensities_measured 56190 _em_diffraction_stats.num_structure_factors 4729 _em_diffraction_stats.overall_phase_error ? _em_diffraction_stats.overall_phase_residual ? _em_diffraction_stats.phase_error_rejection_criteria 0 _em_diffraction_stats.r_merge 0.8 _em_diffraction_stats.r_sym ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 469008 _em_entity_assembly_recombinant.organism 'Escherichia coli BL21(DE3)' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details 'ELECTRON CRYSTALLOGRAPHY' _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 0.05 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI CETA (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'IMAGE ACQUISITION' ? 1 ? ? 1 ? ? MASKING ? 2 ? ? ? ? ? 'CTF CORRECTION' ? 3 1 ? ? ? ? 'LAYERLINE INDEXING' ? 4 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 5 ? ? ? ? ? 'MODEL FITTING' ? 6 ? 1 ? ? ? OTHER ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? 1 ? ? ? 'MOLECULAR REPLACEMENT' ? 9 1 ? ? ? ? 'LATTICE DISTORTION CORRECTION' ? 10 1 ? ? ? ? 'SYMMETRY DETERMINATION' ? 11 1 ? ? ? ? 'CRYSTALLOGRAPHY MERGING' ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'German Research Foundation (DFG)' Germany ? 1 'European Regional Development Fund' 'European Union' ? 2 # _space_group.name_H-M_alt 'P 21 21 21' _space_group.name_Hall 'P 2ac 2ab' _space_group.IT_number 19 _space_group.crystal_system orthorhombic _space_group.id 1 # _atom_sites.entry_id 9QCD _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.032685 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012158 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008492 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.pdbx_scat_Cromer_Mann_a5 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.pdbx_scat_Cromer_Mann_b5 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 0.08930 0.25630 0.75700 1.04870 0.35750 0.24650 1.71000 6.40940 18.61130 50.25230 0.0 ;5-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.03490 0.12010 0.19700 0.05730 0.11950 0.53470 3.58670 12.34710 18.95250 38.62690 0.0 ;5-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 0.10220 0.32190 0.79820 0.81970 0.17150 0.24510 1.74810 6.19250 17.38940 48.14310 0.0 ;5-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 0.09740 0.29210 0.69100 0.69900 0.20390 0.20670 1.38150 4.69430 12.71050 32.47260 0.0 ;5-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 0.25480 0.61060 1.45410 2.32040 0.84770 0.29080 1.87400 8.51760 24.34340 63.29960 0.0 ;5-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 0.24970 0.56280 1.38990 2.18650 0.77150 0.26810 1.67110 7.02670 19.53770 50.38880 0.0 ;5-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ #