HEADER RNA BINDING PROTEIN 06-MAR-25 9QDQ TITLE CRYO-EM STRUCTURE OF UPF1-NMD4-EBS1 IN COMPLEX WITH RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT HELICASE NAM7; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NONSENSE-MEDIATED MRNA DECAY PROTEIN 1,NUCLEAR ACCOMMODATION COMPND 5 OF MITOCHONDRIA 7 PROTEIN,UP-FRAMESHIFT SUPPRESSOR 1; COMPND 6 EC: 3.6.4.12,3.6.4.13; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NONSENSE-MEDIATED MRNA DECAY FACTOR EBS1; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: EST1-LIKE BCY1 SUPPRESSOR 1; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: NONSENSE-MEDIATED DECAY PROTEIN 4; COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'); COMPND 19 CHAIN: D; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: NAM7, IFS2, MOF4, UPF1, YMR080C, YM9582.05C; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 10 ORGANISM_COMMON: BREWER'S YEAST; SOURCE 11 ORGANISM_TAXID: 4932; SOURCE 12 GENE: EBS1, YDR206W, YD8142.03; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 17 ORGANISM_COMMON: BREWER'S YEAST; SOURCE 18 ORGANISM_TAXID: 4932; SOURCE 19 GENE: NMD4, YLR363C; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 22 MOL_ID: 4; SOURCE 23 SYNTHETIC: YES; SOURCE 24 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 25 ORGANISM_TAXID: 4932 KEYWDS HELICASE, NONSENSE-MEDIATED DECAY, RNA BINDING PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR I.IERMAK,N.R.WILSON EISELE,K.KURSCHEIDT,M.J.LOUKERI,J.BASQUIN, AUTHOR 2 F.BONNEAU,L.M.LANGER,A.KEIDEL,E.CONTI REVDAT 1 22-OCT-25 9QDQ 0 JRNL AUTH I.IERMAK,N.R.WILSON EISELE,K.KURSCHEIDT,M.J.LOUKERI, JRNL AUTH 2 J.BASQUIN,F.BONNEAU,L.M.LANGER,A.KEIDEL,E.CONTI JRNL TITL MOLECULAR MECHANISMS GOVERNING THE FORMATION OF DISTINCT JRNL TITL 2 UPF1-CONTAINING COMPLEXES IN YEAST. JRNL REF CELL REP V. 44 16415 2025 JRNL REFN ESSN 2211-1247 JRNL PMID 41076630 JRNL DOI 10.1016/J.CELREP.2025.116415 REMARK 2 REMARK 2 RESOLUTION. 3.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : UCSF CHIMERAX, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : INITIAL FITTING OF THE ALPHAFOLD3 MODEL WAS REMARK 3 DONE IN CHIMERAX. THEN MODEL WAS RIGID BODY REFINED AND REAL REMARK 3 SPACE REFINED IN PHENIX REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.600 REMARK 3 NUMBER OF PARTICLES : 160049 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9QDQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1292146005. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : COMPLEX OF UPF1, NMD4 AND EBS1 REMARK 245 BOUND TO RNA REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 GLY A 5 REMARK 465 SER A 6 REMARK 465 HIS A 7 REMARK 465 THR A 8 REMARK 465 PRO A 9 REMARK 465 TYR A 10 REMARK 465 ASP A 11 REMARK 465 ILE A 12 REMARK 465 SER A 13 REMARK 465 ASN A 14 REMARK 465 SER A 15 REMARK 465 PRO A 16 REMARK 465 SER A 17 REMARK 465 ASP A 18 REMARK 465 VAL A 19 REMARK 465 ASN A 20 REMARK 465 VAL A 21 REMARK 465 GLN A 22 REMARK 465 PRO A 23 REMARK 465 ALA A 24 REMARK 465 THR A 25 REMARK 465 GLN A 26 REMARK 465 LEU A 27 REMARK 465 ASN A 28 REMARK 465 SER A 29 REMARK 465 THR A 30 REMARK 465 LEU A 31 REMARK 465 VAL A 32 REMARK 465 GLU A 33 REMARK 465 ASP A 34 REMARK 465 ASP A 35 REMARK 465 ASP A 36 REMARK 465 VAL A 37 REMARK 465 ASP A 38 REMARK 465 ASN A 39 REMARK 465 GLN A 40 REMARK 465 LEU A 41 REMARK 465 PHE A 42 REMARK 465 GLU A 43 REMARK 465 GLU A 44 REMARK 465 ALA A 45 REMARK 465 GLN A 46 REMARK 465 VAL A 47 REMARK 465 THR A 48 REMARK 465 GLU A 49 REMARK 465 THR A 50 REMARK 465 GLY A 51 REMARK 465 PHE A 52 REMARK 465 ARG A 53 REMARK 465 SER A 54 REMARK 465 PRO A 55 REMARK 465 SER A 56 REMARK 465 PRO A 854 REMARK 465 ARG A 855 REMARK 465 LYS A 856 REMARK 465 THR A 857 REMARK 465 GLU A 858 REMARK 465 ARG A 859 REMARK 465 PRO A 860 REMARK 465 MET A 861 REMARK 465 ASN A 862 REMARK 465 ALA A 863 REMARK 465 GLN A 864 REMARK 465 PHE A 865 REMARK 465 ASN A 866 REMARK 465 VAL A 867 REMARK 465 GLU A 868 REMARK 465 SER A 869 REMARK 465 GLU A 870 REMARK 465 MET A 871 REMARK 465 GLY A 872 REMARK 465 ASP A 873 REMARK 465 PHE A 874 REMARK 465 PRO A 875 REMARK 465 LYS A 876 REMARK 465 PHE A 877 REMARK 465 GLN A 878 REMARK 465 ASP A 879 REMARK 465 PHE A 880 REMARK 465 ASP A 881 REMARK 465 ALA A 882 REMARK 465 GLN A 883 REMARK 465 SER A 884 REMARK 465 MET A 885 REMARK 465 VAL A 886 REMARK 465 SER A 887 REMARK 465 PHE A 888 REMARK 465 SER A 889 REMARK 465 GLY A 890 REMARK 465 GLN A 891 REMARK 465 ILE A 892 REMARK 465 GLY A 893 REMARK 465 ASP A 894 REMARK 465 PHE A 895 REMARK 465 GLY A 896 REMARK 465 ASN A 897 REMARK 465 ALA A 898 REMARK 465 PHE A 899 REMARK 465 VAL A 900 REMARK 465 ASP A 901 REMARK 465 ASN A 902 REMARK 465 THR A 903 REMARK 465 GLU A 904 REMARK 465 LEU A 905 REMARK 465 SER A 906 REMARK 465 SER A 907 REMARK 465 TYR A 908 REMARK 465 ILE A 909 REMARK 465 ASN A 910 REMARK 465 ASN A 911 REMARK 465 GLU A 912 REMARK 465 TYR A 913 REMARK 465 TRP A 914 REMARK 465 ASN A 915 REMARK 465 PHE A 916 REMARK 465 GLU A 917 REMARK 465 ASN A 918 REMARK 465 PHE A 919 REMARK 465 LYS A 920 REMARK 465 SER A 921 REMARK 465 ALA A 922 REMARK 465 PHE A 923 REMARK 465 SER A 924 REMARK 465 GLN A 925 REMARK 465 LYS A 926 REMARK 465 GLN A 927 REMARK 465 ASN A 928 REMARK 465 ARG A 929 REMARK 465 ASN A 930 REMARK 465 GLU A 931 REMARK 465 ILE A 932 REMARK 465 ASP A 933 REMARK 465 ASP A 934 REMARK 465 ARG A 935 REMARK 465 ASN A 936 REMARK 465 LEU A 937 REMARK 465 TYR A 938 REMARK 465 GLN A 939 REMARK 465 GLU A 940 REMARK 465 GLU A 941 REMARK 465 ALA A 942 REMARK 465 SER A 943 REMARK 465 HIS A 944 REMARK 465 LEU A 945 REMARK 465 ASN A 946 REMARK 465 SER A 947 REMARK 465 ASN A 948 REMARK 465 PHE A 949 REMARK 465 ALA A 950 REMARK 465 ARG A 951 REMARK 465 GLU A 952 REMARK 465 LEU A 953 REMARK 465 GLN A 954 REMARK 465 ARG A 955 REMARK 465 GLU A 956 REMARK 465 GLU A 957 REMARK 465 GLN A 958 REMARK 465 LYS A 959 REMARK 465 HIS A 960 REMARK 465 GLU A 961 REMARK 465 LEU A 962 REMARK 465 SER A 963 REMARK 465 LYS A 964 REMARK 465 ASP A 965 REMARK 465 PHE A 966 REMARK 465 SER A 967 REMARK 465 ASN A 968 REMARK 465 LEU A 969 REMARK 465 GLY A 970 REMARK 465 ILE A 971 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 PRO B 3 REMARK 465 SER B 4 REMARK 465 ASN B 5 REMARK 465 THR B 6 REMARK 465 GLN B 7 REMARK 465 LYS B 8 REMARK 465 GLU B 9 REMARK 465 ASP B 10 REMARK 465 LEU B 11 REMARK 465 ASN B 570 REMARK 465 CYS B 571 REMARK 465 GLY B 572 REMARK 465 VAL B 573 REMARK 465 GLU B 574 REMARK 465 TRP B 575 REMARK 465 SER B 576 REMARK 465 ASP B 577 REMARK 465 ASN B 578 REMARK 465 LYS B 579 REMARK 465 SER B 580 REMARK 465 ARG B 581 REMARK 465 TYR B 582 REMARK 465 ILE B 583 REMARK 465 PHE B 584 REMARK 465 ASN B 585 REMARK 465 LYS B 586 REMARK 465 LYS B 587 REMARK 465 ILE B 588 REMARK 465 GLY B 589 REMARK 465 PHE B 590 REMARK 465 LYS B 591 REMARK 465 GLU B 592 REMARK 465 THR B 593 REMARK 465 VAL B 594 REMARK 465 LYS B 595 REMARK 465 ASN B 596 REMARK 465 SER B 597 REMARK 465 MET B 598 REMARK 465 LYS B 599 REMARK 465 THR B 600 REMARK 465 SER B 601 REMARK 465 LYS B 602 REMARK 465 GLN B 603 REMARK 465 SER B 604 REMARK 465 ASN B 605 REMARK 465 GLU B 606 REMARK 465 LYS B 607 REMARK 465 ALA B 608 REMARK 465 LYS B 609 REMARK 465 LEU B 610 REMARK 465 GLN B 611 REMARK 465 ARG B 612 REMARK 465 LYS B 613 REMARK 465 ASN B 614 REMARK 465 LYS B 615 REMARK 465 PRO B 616 REMARK 465 SER B 617 REMARK 465 THR B 618 REMARK 465 THR B 619 REMARK 465 ASN B 620 REMARK 465 GLY B 621 REMARK 465 SER B 622 REMARK 465 ILE B 623 REMARK 465 SER B 624 REMARK 465 MET B 625 REMARK 465 ALA B 626 REMARK 465 ASP B 627 REMARK 465 LEU B 628 REMARK 465 GLU B 629 REMARK 465 ARG B 630 REMARK 465 GLN B 631 REMARK 465 MET B 632 REMARK 465 ARG B 633 REMARK 465 SER B 634 REMARK 465 SER B 635 REMARK 465 SER B 636 REMARK 465 LEU B 637 REMARK 465 ASP B 638 REMARK 465 SER B 639 REMARK 465 PHE B 640 REMARK 465 SER B 641 REMARK 465 PRO B 642 REMARK 465 THR B 643 REMARK 465 MET B 644 REMARK 465 GLY B 645 REMARK 465 TYR B 646 REMARK 465 SER B 647 REMARK 465 GLY B 648 REMARK 465 SER B 649 REMARK 465 SER B 650 REMARK 465 VAL B 651 REMARK 465 PRO B 652 REMARK 465 MET B 653 REMARK 465 ALA B 654 REMARK 465 PRO B 655 REMARK 465 ASP B 656 REMARK 465 THR B 657 REMARK 465 PHE B 658 REMARK 465 ASN B 659 REMARK 465 VAL B 660 REMARK 465 LYS B 661 REMARK 465 PRO B 662 REMARK 465 SER B 663 REMARK 465 GLY B 664 REMARK 465 THR B 665 REMARK 465 ILE B 666 REMARK 465 THR B 667 REMARK 465 GLY B 668 REMARK 465 ASN B 669 REMARK 465 LYS B 670 REMARK 465 VAL B 671 REMARK 465 ASN B 672 REMARK 465 VAL B 673 REMARK 465 GLU B 674 REMARK 465 LEU B 675 REMARK 465 LEU B 676 REMARK 465 LYS B 677 REMARK 465 ILE B 678 REMARK 465 GLU B 679 REMARK 465 LEU B 680 REMARK 465 SER B 681 REMARK 465 GLY B 682 REMARK 465 GLN B 683 REMARK 465 ASN B 684 REMARK 465 ALA B 685 REMARK 465 ASP B 686 REMARK 465 GLY B 687 REMARK 465 ALA B 688 REMARK 465 ILE B 689 REMARK 465 THR B 690 REMARK 465 ASN B 691 REMARK 465 ILE B 692 REMARK 465 SER B 693 REMARK 465 PRO B 694 REMARK 465 GLY B 695 REMARK 465 TYR B 696 REMARK 465 SER B 697 REMARK 465 ASN B 698 REMARK 465 ALA B 699 REMARK 465 ALA B 700 REMARK 465 ILE B 701 REMARK 465 SER B 702 REMARK 465 SER B 703 REMARK 465 SER B 704 REMARK 465 ASN B 705 REMARK 465 SER B 706 REMARK 465 THR B 707 REMARK 465 ASP B 708 REMARK 465 GLU B 709 REMARK 465 SER B 710 REMARK 465 SER B 711 REMARK 465 PHE B 712 REMARK 465 ASP B 713 REMARK 465 LEU B 714 REMARK 465 ASN B 715 REMARK 465 ASN B 716 REMARK 465 ILE B 717 REMARK 465 LEU B 718 REMARK 465 SER B 719 REMARK 465 SER B 720 REMARK 465 MET B 721 REMARK 465 GLN B 722 REMARK 465 GLN B 723 REMARK 465 LYS B 724 REMARK 465 HIS B 725 REMARK 465 ALA B 726 REMARK 465 GLU B 727 REMARK 465 LYS B 728 REMARK 465 SER B 729 REMARK 465 PHE B 730 REMARK 465 ALA B 731 REMARK 465 LYS B 732 REMARK 465 SER B 733 REMARK 465 MET B 734 REMARK 465 GLN B 735 REMARK 465 GLY B 736 REMARK 465 VAL B 737 REMARK 465 ASN B 738 REMARK 465 GLU B 739 REMARK 465 GLN B 740 REMARK 465 ILE B 741 REMARK 465 PRO B 742 REMARK 465 ALA B 743 REMARK 465 ASN B 744 REMARK 465 ASP B 745 REMARK 465 VAL B 746 REMARK 465 CYS B 747 REMARK 465 HIS B 748 REMARK 465 GLN B 749 REMARK 465 ALA B 750 REMARK 465 GLN B 751 REMARK 465 ARG B 752 REMARK 465 PRO B 753 REMARK 465 MET B 754 REMARK 465 GLN B 755 REMARK 465 GLY B 756 REMARK 465 GLY B 757 REMARK 465 LEU B 758 REMARK 465 TYR B 759 REMARK 465 SER B 760 REMARK 465 SER B 761 REMARK 465 GLN B 762 REMARK 465 GLN B 763 REMARK 465 PRO B 764 REMARK 465 SER B 765 REMARK 465 SER B 766 REMARK 465 MET B 767 REMARK 465 SER B 768 REMARK 465 SER B 769 REMARK 465 LEU B 770 REMARK 465 ASN B 771 REMARK 465 SER B 772 REMARK 465 ALA B 773 REMARK 465 TYR B 774 REMARK 465 GLN B 775 REMARK 465 ASN B 776 REMARK 465 ALA B 777 REMARK 465 SER B 778 REMARK 465 MET B 779 REMARK 465 PRO B 780 REMARK 465 PRO B 781 REMARK 465 SER B 782 REMARK 465 ALA B 783 REMARK 465 SER B 784 REMARK 465 MET B 785 REMARK 465 VAL B 786 REMARK 465 SER B 787 REMARK 465 TYR B 788 REMARK 465 PRO B 789 REMARK 465 TYR B 790 REMARK 465 PRO B 791 REMARK 465 PHE B 792 REMARK 465 LEU B 793 REMARK 465 ASN B 794 REMARK 465 GLN B 795 REMARK 465 GLN B 796 REMARK 465 GLY B 797 REMARK 465 GLN B 798 REMARK 465 GLY B 799 REMARK 465 VAL B 800 REMARK 465 PHE B 801 REMARK 465 PRO B 802 REMARK 465 PRO B 803 REMARK 465 TYR B 804 REMARK 465 ASN B 805 REMARK 465 ALA B 806 REMARK 465 GLN B 807 REMARK 465 ASN B 808 REMARK 465 LEU B 809 REMARK 465 GLN B 810 REMARK 465 TRP B 811 REMARK 465 GLN B 812 REMARK 465 SER B 813 REMARK 465 GLU B 814 REMARK 465 ALA B 815 REMARK 465 TYR B 816 REMARK 465 SER B 817 REMARK 465 LEU B 818 REMARK 465 LYS B 819 REMARK 465 SER B 820 REMARK 465 MET B 821 REMARK 465 ASN B 822 REMARK 465 PHE B 823 REMARK 465 ALA B 824 REMARK 465 ASN B 825 REMARK 465 PRO B 826 REMARK 465 THR B 827 REMARK 465 TRP B 828 REMARK 465 LEU B 829 REMARK 465 GLY B 830 REMARK 465 ASP B 831 REMARK 465 GLN B 832 REMARK 465 TYR B 833 REMARK 465 GLN B 834 REMARK 465 THR B 835 REMARK 465 SER B 836 REMARK 465 ALA B 837 REMARK 465 PRO B 838 REMARK 465 SER B 839 REMARK 465 SER B 840 REMARK 465 ALA B 841 REMARK 465 TYR B 842 REMARK 465 ALA B 843 REMARK 465 GLN B 844 REMARK 465 ALA B 845 REMARK 465 GLN B 846 REMARK 465 ARG B 847 REMARK 465 GLN B 848 REMARK 465 MET B 849 REMARK 465 PHE B 850 REMARK 465 GLN B 851 REMARK 465 GLN B 852 REMARK 465 PRO B 853 REMARK 465 MET B 854 REMARK 465 GLN B 855 REMARK 465 GLN B 856 REMARK 465 ASP B 857 REMARK 465 VAL B 858 REMARK 465 GLY B 859 REMARK 465 LYS B 860 REMARK 465 TYR B 861 REMARK 465 MET B 862 REMARK 465 GLN B 863 REMARK 465 PHE B 864 REMARK 465 PRO B 865 REMARK 465 PHE B 866 REMARK 465 ASP B 867 REMARK 465 ALA B 868 REMARK 465 GLN B 869 REMARK 465 SER B 870 REMARK 465 ASN B 871 REMARK 465 THR B 872 REMARK 465 ASP B 873 REMARK 465 SER B 874 REMARK 465 MET B 875 REMARK 465 ARG B 876 REMARK 465 GLY B 877 REMARK 465 ASN B 878 REMARK 465 SER B 879 REMARK 465 ARG B 880 REMARK 465 ASN B 881 REMARK 465 ASN B 882 REMARK 465 MET B 883 REMARK 465 PHE B 884 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 GLN C 3 REMARK 465 TYR C 4 REMARK 465 ASN C 5 REMARK 465 PHE C 6 REMARK 465 ILE C 7 REMARK 465 ILE C 8 REMARK 465 ASP C 9 REMARK 465 ALA C 10 REMARK 465 SER C 11 REMARK 465 ALA C 12 REMARK 465 PHE C 13 REMARK 465 GLU C 14 REMARK 465 LYS C 15 REMARK 465 GLY C 16 REMARK 465 LEU C 17 REMARK 465 GLY C 18 REMARK 465 ASN C 19 REMARK 465 ILE C 20 REMARK 465 LYS C 21 REMARK 465 ARG C 22 REMARK 465 TRP C 23 REMARK 465 CYS C 24 REMARK 465 SER C 25 REMARK 465 ASP C 26 REMARK 465 CYS C 27 REMARK 465 THR C 28 REMARK 465 GLU C 29 REMARK 465 ALA C 30 REMARK 465 VAL C 31 REMARK 465 THR C 32 REMARK 465 LEU C 33 REMARK 465 ASN C 34 REMARK 465 PHE C 35 REMARK 465 TYR C 36 REMARK 465 ILE C 37 REMARK 465 PRO C 38 REMARK 465 THR C 39 REMARK 465 PHE C 40 REMARK 465 THR C 41 REMARK 465 LEU C 42 REMARK 465 ASN C 43 REMARK 465 GLU C 44 REMARK 465 LEU C 45 REMARK 465 ASP C 46 REMARK 465 PHE C 47 REMARK 465 LEU C 48 REMARK 465 GLN C 49 REMARK 465 GLN C 50 REMARK 465 ARG C 51 REMARK 465 ARG C 52 REMARK 465 LYS C 53 REMARK 465 SER C 54 REMARK 465 PHE C 55 REMARK 465 ALA C 56 REMARK 465 ALA C 57 REMARK 465 ARG C 58 REMARK 465 GLU C 59 REMARK 465 SER C 60 REMARK 465 LEU C 61 REMARK 465 LYS C 62 REMARK 465 PHE C 63 REMARK 465 ILE C 64 REMARK 465 ASP C 65 REMARK 465 ARG C 66 REMARK 465 LEU C 67 REMARK 465 ASP C 68 REMARK 465 ASP C 69 REMARK 465 SER C 70 REMARK 465 LYS C 71 REMARK 465 PHE C 72 REMARK 465 ALA C 73 REMARK 465 ASN C 74 REMARK 465 LEU C 75 REMARK 465 LYS C 76 REMARK 465 VAL C 77 REMARK 465 PHE C 78 REMARK 465 ILE C 79 REMARK 465 GLU C 80 REMARK 465 PHE C 81 REMARK 465 PRO C 82 REMARK 465 GLU C 83 REMARK 465 VAL C 84 REMARK 465 LEU C 85 REMARK 465 ASP C 86 REMARK 465 ILE C 87 REMARK 465 ILE C 88 REMARK 465 LEU C 89 REMARK 465 TRP C 90 REMARK 465 SER C 91 REMARK 465 ASP C 92 REMARK 465 VAL C 93 REMARK 465 MET C 94 REMARK 465 GLU C 95 REMARK 465 HIS C 96 REMARK 465 ASN C 97 REMARK 465 ASP C 98 REMARK 465 SER C 99 REMARK 465 SER C 100 REMARK 465 GLY C 101 REMARK 465 LYS C 102 REMARK 465 ILE C 103 REMARK 465 ASN C 104 REMARK 465 ILE C 105 REMARK 465 ALA C 106 REMARK 465 LYS C 107 REMARK 465 LEU C 108 REMARK 465 PRO C 109 REMARK 465 LYS C 110 REMARK 465 ARG C 111 REMARK 465 LEU C 112 REMARK 465 LYS C 113 REMARK 465 ASN C 114 REMARK 465 LEU C 115 REMARK 465 LEU C 116 REMARK 465 LYS C 117 REMARK 465 SER C 118 REMARK 465 CYS C 119 REMARK 465 ILE C 120 REMARK 465 TYR C 121 REMARK 465 LYS C 122 REMARK 465 CYS C 123 REMARK 465 TYR C 124 REMARK 465 LEU C 125 REMARK 465 GLU C 126 REMARK 465 GLY C 127 REMARK 465 ASN C 128 REMARK 465 GLU C 129 REMARK 465 GLY C 130 REMARK 465 LEU C 131 REMARK 465 HIS C 132 REMARK 465 TRP C 133 REMARK 465 PHE C 134 REMARK 465 LEU C 135 REMARK 465 ILE C 136 REMARK 465 SER C 137 REMARK 465 GLU C 138 REMARK 465 ASP C 139 REMARK 465 PRO C 140 REMARK 465 GLN C 141 REMARK 465 ILE C 142 REMARK 465 ARG C 143 REMARK 465 GLU C 144 REMARK 465 MET C 145 REMARK 465 ALA C 146 REMARK 465 MET C 147 REMARK 465 GLN C 148 REMARK 465 CYS C 149 REMARK 465 ASN C 150 REMARK 465 ILE C 151 REMARK 465 PRO C 152 REMARK 465 SER C 153 REMARK 465 CYS C 154 REMARK 465 SER C 155 REMARK 465 ILE C 156 REMARK 465 VAL C 157 REMARK 465 ASP C 158 REMARK 465 VAL C 159 REMARK 465 ASP C 160 REMARK 465 SER C 161 REMARK 465 ILE C 162 REMARK 465 LEU C 163 REMARK 465 SER C 164 REMARK 465 LYS C 165 REMARK 465 ASP C 166 REMARK 465 MET C 167 REMARK 465 ASN C 168 REMARK 465 U D 29 REMARK 465 U D 30 REMARK 465 U D 31 REMARK 465 U D 32 REMARK 465 U D 33 REMARK 465 U D 34 REMARK 465 U D 35 REMARK 465 U D 36 REMARK 465 U D 37 REMARK 465 U D 38 REMARK 465 U D 39 REMARK 465 U D 40 REMARK 465 U D 41 REMARK 465 U D 42 REMARK 465 U D 43 REMARK 465 U D 44 REMARK 465 U D 45 REMARK 465 U D 46 REMARK 465 U D 47 REMARK 465 U D 48 REMARK 465 U D 49 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 681 CG CD REMARK 470 HIS B 197 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 215 CG CD OE1 OE2 REMARK 470 LEU B 234 CG CD1 CD2 REMARK 470 PRO B 275 CG CD REMARK 470 SER B 276 OG REMARK 470 LEU B 356 CG CD1 CD2 REMARK 470 LEU B 379 CG CD1 CD2 REMARK 470 ILE B 525 CG1 CG2 CD1 REMARK 470 SER B 531 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 103 -3.95 69.76 REMARK 500 ASP A 217 46.24 34.94 REMARK 500 GLU A 223 124.41 -38.83 REMARK 500 GLN A 260 34.56 -96.67 REMARK 500 GLU A 573 59.89 38.11 REMARK 500 ARG A 666 31.42 -96.99 REMARK 500 PRO A 681 52.06 -63.96 REMARK 500 GLU A 692 -168.54 -126.59 REMARK 500 VAL A 778 -59.09 61.97 REMARK 500 THR A 800 5.40 -69.81 REMARK 500 VAL B 88 -64.35 -121.25 REMARK 500 PHE B 105 30.59 -98.76 REMARK 500 LYS B 482 70.32 56.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-53032 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF UPF1-NMD4-EBS1 IN COMPLEX WITH RNA DBREF 9QDQ A 1 971 UNP P30771 RENT1_YEAST 1 971 DBREF 9QDQ B 1 884 UNP Q03466 EBS1_YEAST 1 884 DBREF 9QDQ C 1 218 UNP Q12129 NMD4_YEAST 1 218 DBREF 9QDQ D 20 49 PDB 9QDQ 9QDQ 20 49 SEQRES 1 A 971 MET VAL GLY SER GLY SER HIS THR PRO TYR ASP ILE SER SEQRES 2 A 971 ASN SER PRO SER ASP VAL ASN VAL GLN PRO ALA THR GLN SEQRES 3 A 971 LEU ASN SER THR LEU VAL GLU ASP ASP ASP VAL ASP ASN SEQRES 4 A 971 GLN LEU PHE GLU GLU ALA GLN VAL THR GLU THR GLY PHE SEQRES 5 A 971 ARG SER PRO SER ALA SER ASP ASN SER CYS ALA TYR CYS SEQRES 6 A 971 GLY ILE ASP SER ALA LYS CYS VAL ILE LYS CYS ASN SER SEQRES 7 A 971 CYS LYS LYS TRP PHE CYS ASN THR LYS ASN GLY THR SER SEQRES 8 A 971 SER SER HIS ILE VAL ASN HIS LEU VAL LEU SER HIS HIS SEQRES 9 A 971 ASN VAL VAL SER LEU HIS PRO ASP SER ASP LEU GLY ASP SEQRES 10 A 971 THR VAL LEU GLU CYS TYR ASN CYS GLY ARG LYS ASN VAL SEQRES 11 A 971 PHE LEU LEU GLY PHE VAL SER ALA LYS SER GLU ALA VAL SEQRES 12 A 971 VAL VAL LEU LEU CYS ARG ILE PRO CYS ALA GLN THR LYS SEQRES 13 A 971 ASN ALA ASN TRP ASP THR ASP GLN TRP GLN PRO LEU ILE SEQRES 14 A 971 GLU ASP ARG GLN LEU LEU SER TRP VAL ALA GLU GLN PRO SEQRES 15 A 971 THR GLU GLU GLU LYS LEU LYS ALA ARG LEU ILE THR PRO SEQRES 16 A 971 SER GLN ILE SER LYS LEU GLU ALA LYS TRP ARG SER ASN SEQRES 17 A 971 LYS ASP ALA THR ILE ASN ASP ILE ASP ALA PRO GLU GLU SEQRES 18 A 971 GLN GLU ALA ILE PRO PRO LEU LEU LEU ARG TYR GLN ASP SEQRES 19 A 971 ALA TYR GLU TYR GLN ARG SER TYR GLY PRO LEU ILE LYS SEQRES 20 A 971 LEU GLU ALA ASP TYR ASP LYS GLN LEU LYS GLU SER GLN SEQRES 21 A 971 ALA LEU GLU HIS ILE SER VAL SER TRP SER LEU ALA LEU SEQRES 22 A 971 ASN ASN ARG HIS LEU ALA SER PHE THR LEU SER THR PHE SEQRES 23 A 971 GLU SER ASN GLU LEU LYS VAL ALA ILE GLY ASP GLU MET SEQRES 24 A 971 ILE LEU TRP TYR SER GLY MET GLN HIS PRO ASP TRP GLU SEQRES 25 A 971 GLY ARG GLY TYR ILE VAL ARG LEU PRO ASN SER PHE GLN SEQRES 26 A 971 ASP THR PHE THR LEU GLU LEU LYS PRO SER LYS THR PRO SEQRES 27 A 971 PRO PRO THR HIS LEU THR THR GLY PHE THR ALA GLU PHE SEQRES 28 A 971 ILE TRP LYS GLY THR SER TYR ASP ARG MET GLN ASP ALA SEQRES 29 A 971 LEU LYS LYS PHE ALA ILE ASP LYS LYS SER ILE SER GLY SEQRES 30 A 971 TYR LEU TYR TYR LYS ILE LEU GLY HIS GLN VAL VAL ASP SEQRES 31 A 971 ILE SER PHE ASP VAL PRO LEU PRO LYS GLU PHE SER ILE SEQRES 32 A 971 PRO ASN PHE ALA GLN LEU ASN SER SER GLN SER ASN ALA SEQRES 33 A 971 VAL SER HIS VAL LEU GLN ARG PRO LEU SER LEU ILE GLN SEQRES 34 A 971 GLY PRO PRO GLY THR GLY LYS THR VAL THR SER ALA THR SEQRES 35 A 971 ILE VAL TYR HIS LEU SER LYS ILE HIS LYS ASP ARG ILE SEQRES 36 A 971 LEU VAL CYS ALA PRO SER ASN VAL ALA VAL ASP HIS LEU SEQRES 37 A 971 ALA ALA LYS LEU ARG ASP LEU GLY LEU LYS VAL VAL ARG SEQRES 38 A 971 LEU THR ALA LYS SER ARG GLU ASP VAL GLU SER SER VAL SEQRES 39 A 971 SER ASN LEU ALA LEU HIS ASN LEU VAL GLY ARG GLY ALA SEQRES 40 A 971 LYS GLY GLU LEU LYS ASN LEU LEU LYS LEU LYS ASP GLU SEQRES 41 A 971 VAL GLY GLU LEU SER ALA SER ASP THR LYS ARG PHE VAL SEQRES 42 A 971 LYS LEU VAL ARG LYS THR GLU ALA GLU ILE LEU ASN LYS SEQRES 43 A 971 ALA ASP VAL VAL CYS CYS THR CYS VAL GLY ALA GLY ASP SEQRES 44 A 971 LYS ARG LEU ASP THR LYS PHE ARG THR VAL LEU ILE ASP SEQRES 45 A 971 GLU SER THR GLN ALA SER GLU PRO GLU CYS LEU ILE PRO SEQRES 46 A 971 ILE VAL LYS GLY ALA LYS GLN VAL ILE LEU VAL GLY ASP SEQRES 47 A 971 HIS GLN GLN LEU GLY PRO VAL ILE LEU GLU ARG LYS ALA SEQRES 48 A 971 ALA ASP ALA GLY LEU LYS GLN SER LEU PHE GLU ARG LEU SEQRES 49 A 971 ILE SER LEU GLY HIS VAL PRO ILE ARG LEU GLU VAL GLN SEQRES 50 A 971 TYR ARG MET ASN PRO TYR LEU SER GLU PHE PRO SER ASN SEQRES 51 A 971 MET PHE TYR GLU GLY SER LEU GLN ASN GLY VAL THR ILE SEQRES 52 A 971 GLU GLN ARG THR VAL PRO ASN SER LYS PHE PRO TRP PRO SEQRES 53 A 971 ILE ARG GLY ILE PRO MET MET PHE TRP ALA ASN TYR GLY SEQRES 54 A 971 ARG GLU GLU ILE SER ALA ASN GLY THR SER PHE LEU ASN SEQRES 55 A 971 ARG ILE GLU ALA MET ASN CYS GLU ARG ILE ILE THR LYS SEQRES 56 A 971 LEU PHE ARG ASP GLY VAL LYS PRO GLU GLN ILE GLY VAL SEQRES 57 A 971 ILE THR PRO TYR GLU GLY GLN ARG ALA TYR ILE LEU GLN SEQRES 58 A 971 TYR MET GLN MET ASN GLY SER LEU ASP LYS ASP LEU TYR SEQRES 59 A 971 ILE LYS VAL GLU VAL ALA SER VAL ASP ALA PHE GLN GLY SEQRES 60 A 971 ARG GLU LYS ASP TYR ILE ILE LEU SER CYS VAL ARG ALA SEQRES 61 A 971 ASN GLU GLN GLN ALA ILE GLY PHE LEU ARG ASP PRO ARG SEQRES 62 A 971 ARG LEU ASN VAL GLY LEU THR ARG ALA LYS TYR GLY LEU SEQRES 63 A 971 VAL ILE LEU GLY ASN PRO ARG SER LEU ALA ARG ASN THR SEQRES 64 A 971 LEU TRP ASN HIS LEU LEU ILE HIS PHE ARG GLU LYS GLY SEQRES 65 A 971 CYS LEU VAL GLU GLY THR LEU ASP ASN LEU GLN LEU CYS SEQRES 66 A 971 THR VAL GLN LEU VAL ARG PRO GLN PRO ARG LYS THR GLU SEQRES 67 A 971 ARG PRO MET ASN ALA GLN PHE ASN VAL GLU SER GLU MET SEQRES 68 A 971 GLY ASP PHE PRO LYS PHE GLN ASP PHE ASP ALA GLN SER SEQRES 69 A 971 MET VAL SER PHE SER GLY GLN ILE GLY ASP PHE GLY ASN SEQRES 70 A 971 ALA PHE VAL ASP ASN THR GLU LEU SER SER TYR ILE ASN SEQRES 71 A 971 ASN GLU TYR TRP ASN PHE GLU ASN PHE LYS SER ALA PHE SEQRES 72 A 971 SER GLN LYS GLN ASN ARG ASN GLU ILE ASP ASP ARG ASN SEQRES 73 A 971 LEU TYR GLN GLU GLU ALA SER HIS LEU ASN SER ASN PHE SEQRES 74 A 971 ALA ARG GLU LEU GLN ARG GLU GLU GLN LYS HIS GLU LEU SEQRES 75 A 971 SER LYS ASP PHE SER ASN LEU GLY ILE SEQRES 1 B 884 MET GLU PRO SER ASN THR GLN LYS GLU ASP LEU PRO THR SEQRES 2 B 884 ALA PHE ASN GLY ILE LYS SER GLN LEU ASN SER ILE LEU SEQRES 3 B 884 LYS SER ASN GLN LEU PHE GLN ASP TYR ALA LEU LEU ASN SEQRES 4 B 884 GLY PHE LEU ALA PHE VAL HIS SER LYS LEU ASN ALA ALA SEQRES 5 B 884 ILE LEU THR SER ILE GLU SER GLN CYS GLY LYS SER PHE SEQRES 6 B 884 ALA ALA ASP LEU ASP SER PHE ASP GLN SER SER ILE SER SEQRES 7 B 884 SER ILE LEU ASP PHE SER TRP GLU SER VAL HIS TYR PRO SEQRES 8 B 884 ILE PHE LYS TRP PHE GLN MET TRP ARG ASN TYR ILE LEU SEQRES 9 B 884 PHE GLU LYS GLU ASN LYS LYS GLN GLN THR LYS PHE ILE SEQRES 10 B 884 ASP PHE ARG LYS MET ASN SER LYS MET LEU LYS PHE PHE SEQRES 11 B 884 LYS THR VAL GLN ASN PHE TYR VAL ASN VAL ILE ASN THR SEQRES 12 B 884 VAL TYR LYS LYS TYR ASP ILE SER VAL LEU LEU PRO LYS SEQRES 13 B 884 ARG ILE ILE GLN ASP LEU LYS LEU SER ASP ILE GLU ASN SEQRES 14 B 884 THR THR ASN VAL GLY ASP ILE LEU ALA VAL LYS THR PHE SEQRES 15 B 884 ASN SER SER SER PRO LEU ALA HIS LEU ILE PRO THR LEU SEQRES 16 B 884 PHE HIS ARG CYS LEU LEU PHE LEU GLY THR ALA TYR ARG SEQRES 17 B 884 TYR LYS THR LEU LEU GLU GLU ILE SER ASN LYS TYR SER SEQRES 18 B 884 ILE SER ASN PHE LYS LYS SER LEU ASP PHE PHE ARG LEU SEQRES 19 B 884 ALA SER LEU VAL LEU PRO SER ALA GLY GLU THR TYR SER SEQRES 20 B 884 GLN ALA GLY ALA ILE PHE LEU GLN THR GLY ASN LEU GLY SEQRES 21 B 884 ILE ALA VAL PHE ASN PHE VAL LYS GLY MET MET THR LYS SEQRES 22 B 884 MET PRO SER PRO VAL SER ILE LYS ASN PHE GLY ALA LEU SEQRES 23 B 884 MET VAL ASP ASN LYS SER SER LEU ASN ARG SER LEU HIS SEQRES 24 B 884 THR THR ILE MET ASN THR TYR LEU GLN GLU SER LYS GLY SEQRES 25 B 884 PRO ARG THR PRO ALA LYS GLU ILE LEU GLU PHE TYR PHE SEQRES 26 B 884 LEU GLY LEU PHE GLY SER VAL TRP SER PRO THR SER TRP SEQRES 27 B 884 ARG ASP ASP THR LYS PRO ASN GLN LEU ASN ASN GLY ILE SEQRES 28 B 884 LYS LEU ARG HIS LEU GLU ASN ALA LEU TYR GLU THR MET SEQRES 29 B 884 SER ALA ARG TYR LEU ASN ASN ILE LYS THR ILE PHE HIS SEQRES 30 B 884 ASN LEU ILE ILE THR ILE GLY GLY PHE HIS LEU LEU LEU SEQRES 31 B 884 LYS ARG ARG SER ASP VAL SER ALA LYS THR LEU LYS ASP SEQRES 32 B 884 LEU ARG SER ASN GLU LEU ASP TYR LEU ASN PHE ALA PHE SEQRES 33 B 884 LYS TYR ILE ALA HIS ILE LEU ASN ASP ILE VAL LYS GLU SEQRES 34 B 884 SER TRP SER GLU ASN PRO GLU VAL SER GLU ILE LEU GLY SEQRES 35 B 884 MET VAL ARG ILE ILE ASN CYS TRP ILE LYS ALA ASN PRO SEQRES 36 B 884 MET VAL LEU GLN TYR SER GLN SER ASN LEU GLU PHE VAL SEQRES 37 B 884 ASN ALA LEU ALA TYR LEU ILE ASN ASP ILE VAL LYS LYS SEQRES 38 B 884 LYS PRO SER PRO SER PHE SER ILE THR GLU HIS ILE PRO SEQRES 39 B 884 LYS ARG THR TYR TRP PHE GLU GLU ASP LEU MET VAL LYS SEQRES 40 B 884 GLY LEU SER PHE VAL ASN PHE GLN LEU SER ASP PHE ASP SEQRES 41 B 884 ASP TYR GLU LYS ILE LEU GLU MET ASP HIS SER LEU ASP SEQRES 42 B 884 ARG LEU ILE GLY ASN PRO PRO LEU CYS ASP LYS LEU SER SEQRES 43 B 884 ALA SER SER GLU MET LEU LEU ARG LEU GLN ALA VAL VAL SEQRES 44 B 884 ASN ILE SER SER GLN LEU LEU GLN ASN ASN ASN CYS GLY SEQRES 45 B 884 VAL GLU TRP SER ASP ASN LYS SER ARG TYR ILE PHE ASN SEQRES 46 B 884 LYS LYS ILE GLY PHE LYS GLU THR VAL LYS ASN SER MET SEQRES 47 B 884 LYS THR SER LYS GLN SER ASN GLU LYS ALA LYS LEU GLN SEQRES 48 B 884 ARG LYS ASN LYS PRO SER THR THR ASN GLY SER ILE SER SEQRES 49 B 884 MET ALA ASP LEU GLU ARG GLN MET ARG SER SER SER LEU SEQRES 50 B 884 ASP SER PHE SER PRO THR MET GLY TYR SER GLY SER SER SEQRES 51 B 884 VAL PRO MET ALA PRO ASP THR PHE ASN VAL LYS PRO SER SEQRES 52 B 884 GLY THR ILE THR GLY ASN LYS VAL ASN VAL GLU LEU LEU SEQRES 53 B 884 LYS ILE GLU LEU SER GLY GLN ASN ALA ASP GLY ALA ILE SEQRES 54 B 884 THR ASN ILE SER PRO GLY TYR SER ASN ALA ALA ILE SER SEQRES 55 B 884 SER SER ASN SER THR ASP GLU SER SER PHE ASP LEU ASN SEQRES 56 B 884 ASN ILE LEU SER SER MET GLN GLN LYS HIS ALA GLU LYS SEQRES 57 B 884 SER PHE ALA LYS SER MET GLN GLY VAL ASN GLU GLN ILE SEQRES 58 B 884 PRO ALA ASN ASP VAL CYS HIS GLN ALA GLN ARG PRO MET SEQRES 59 B 884 GLN GLY GLY LEU TYR SER SER GLN GLN PRO SER SER MET SEQRES 60 B 884 SER SER LEU ASN SER ALA TYR GLN ASN ALA SER MET PRO SEQRES 61 B 884 PRO SER ALA SER MET VAL SER TYR PRO TYR PRO PHE LEU SEQRES 62 B 884 ASN GLN GLN GLY GLN GLY VAL PHE PRO PRO TYR ASN ALA SEQRES 63 B 884 GLN ASN LEU GLN TRP GLN SER GLU ALA TYR SER LEU LYS SEQRES 64 B 884 SER MET ASN PHE ALA ASN PRO THR TRP LEU GLY ASP GLN SEQRES 65 B 884 TYR GLN THR SER ALA PRO SER SER ALA TYR ALA GLN ALA SEQRES 66 B 884 GLN ARG GLN MET PHE GLN GLN PRO MET GLN GLN ASP VAL SEQRES 67 B 884 GLY LYS TYR MET GLN PHE PRO PHE ASP ALA GLN SER ASN SEQRES 68 B 884 THR ASP SER MET ARG GLY ASN SER ARG ASN ASN MET PHE SEQRES 1 C 218 MET THR GLN TYR ASN PHE ILE ILE ASP ALA SER ALA PHE SEQRES 2 C 218 GLU LYS GLY LEU GLY ASN ILE LYS ARG TRP CYS SER ASP SEQRES 3 C 218 CYS THR GLU ALA VAL THR LEU ASN PHE TYR ILE PRO THR SEQRES 4 C 218 PHE THR LEU ASN GLU LEU ASP PHE LEU GLN GLN ARG ARG SEQRES 5 C 218 LYS SER PHE ALA ALA ARG GLU SER LEU LYS PHE ILE ASP SEQRES 6 C 218 ARG LEU ASP ASP SER LYS PHE ALA ASN LEU LYS VAL PHE SEQRES 7 C 218 ILE GLU PHE PRO GLU VAL LEU ASP ILE ILE LEU TRP SER SEQRES 8 C 218 ASP VAL MET GLU HIS ASN ASP SER SER GLY LYS ILE ASN SEQRES 9 C 218 ILE ALA LYS LEU PRO LYS ARG LEU LYS ASN LEU LEU LYS SEQRES 10 C 218 SER CYS ILE TYR LYS CYS TYR LEU GLU GLY ASN GLU GLY SEQRES 11 C 218 LEU HIS TRP PHE LEU ILE SER GLU ASP PRO GLN ILE ARG SEQRES 12 C 218 GLU MET ALA MET GLN CYS ASN ILE PRO SER CYS SER ILE SEQRES 13 C 218 VAL ASP VAL ASP SER ILE LEU SER LYS ASP MET ASN ASP SEQRES 14 C 218 LYS SER PHE ARG GLU SER GLU LYS PHE ASN ASN MET MET SEQRES 15 C 218 LEU LYS ASN GLY THR LYS GLU GLU SER GLU ASN GLY ARG SEQRES 16 C 218 GLU ILE ILE ARG THR ASN PHE ASN LYS THR VAL TYR ALA SEQRES 17 C 218 SER ARG GLY THR GLY GLU LEU TRP SER PRO SEQRES 1 D 30 U U U U U U U U U U U U U SEQRES 2 D 30 U U U U U U U U U U U U U SEQRES 3 D 30 U U U U HELIX 1 AA1 SER A 93 SER A 102 1 10 HELIX 2 AA2 ASP A 161 TRP A 165 5 5 HELIX 3 AA3 THR A 183 ALA A 190 1 8 HELIX 4 AA4 THR A 194 ALA A 203 1 10 HELIX 5 AA5 THR A 212 ASP A 217 1 6 HELIX 6 AA6 ASP A 234 SER A 259 1 26 HELIX 7 AA7 SER A 284 LEU A 291 1 8 HELIX 8 AA8 GLY A 355 ASP A 371 1 17 HELIX 9 AA9 LYS A 372 ILE A 375 5 4 HELIX 10 AB1 SER A 376 LEU A 384 1 9 HELIX 11 AB2 ASN A 410 LEU A 421 1 12 HELIX 12 AB3 GLY A 435 LYS A 452 1 18 HELIX 13 AB4 SER A 461 LEU A 475 1 15 HELIX 14 AB5 VAL A 494 LEU A 497 5 4 HELIX 15 AB6 ALA A 498 GLY A 506 1 9 HELIX 16 AB7 GLY A 509 GLY A 522 1 14 HELIX 17 AB8 SER A 525 ALA A 547 1 23 HELIX 18 AB9 VAL A 555 ASP A 559 5 5 HELIX 19 AC1 GLU A 573 ALA A 577 5 5 HELIX 20 AC2 SER A 578 ILE A 584 1 7 HELIX 21 AC3 GLU A 608 GLY A 615 1 8 HELIX 22 AC4 SER A 619 GLY A 628 1 10 HELIX 23 AC5 ASN A 641 TYR A 653 1 13 HELIX 24 AC6 ASN A 702 ASP A 719 1 18 HELIX 25 AC7 LYS A 722 GLU A 724 5 3 HELIX 26 AC8 TYR A 732 ASN A 746 1 15 HELIX 27 AC9 ASP A 750 LYS A 756 1 7 HELIX 28 AD1 ASP A 763 GLN A 766 5 4 HELIX 29 AD2 GLY A 787 ARG A 790 5 4 HELIX 30 AD3 ASP A 791 THR A 800 1 10 HELIX 31 AD4 ASN A 811 ALA A 816 1 6 HELIX 32 AD5 ASN A 818 LYS A 831 1 14 HELIX 33 AD6 PHE B 15 ASN B 29 1 15 HELIX 34 AD7 GLN B 30 GLN B 33 5 4 HELIX 35 AD8 ASP B 34 LYS B 63 1 30 HELIX 36 AD9 ASP B 68 PHE B 72 5 5 HELIX 37 AE1 GLN B 74 VAL B 88 1 15 HELIX 38 AE2 VAL B 88 PHE B 105 1 18 HELIX 39 AE3 LYS B 111 TYR B 148 1 38 HELIX 40 AE4 PRO B 155 LEU B 162 1 8 HELIX 41 AE5 PRO B 187 GLU B 215 1 29 HELIX 42 AE6 SER B 221 ASN B 224 5 4 HELIX 43 AE7 PHE B 225 LEU B 239 1 15 HELIX 44 AE8 ALA B 242 THR B 256 1 15 HELIX 45 AE9 LEU B 259 MET B 271 1 13 HELIX 46 AF1 SER B 276 VAL B 288 1 13 HELIX 47 AF2 SER B 292 GLY B 312 1 21 HELIX 48 AF3 PRO B 316 SER B 334 1 19 HELIX 49 AF4 SER B 334 ARG B 339 1 6 HELIX 50 AF5 LYS B 352 TYR B 368 1 17 HELIX 51 AF6 ASN B 371 ARG B 393 1 23 HELIX 52 AF7 ARG B 405 ILE B 426 1 22 HELIX 53 AF8 ILE B 426 TRP B 431 1 6 HELIX 54 AF9 SER B 438 ASN B 454 1 17 HELIX 55 AG1 ASN B 454 SER B 463 1 10 HELIX 56 AG2 ASN B 464 LYS B 482 1 19 HELIX 57 AG3 PHE B 500 VAL B 506 1 7 HELIX 58 AG4 LEU B 509 ASN B 513 5 5 HELIX 59 AG5 ASP B 521 MET B 528 1 8 HELIX 60 AG6 HIS B 530 ILE B 536 1 7 HELIX 61 AG7 PRO B 540 LYS B 544 5 5 HELIX 62 AG8 SER B 546 GLN B 567 1 22 HELIX 63 AG9 LYS C 170 GLY C 186 1 17 SHEET 1 AA1 3 LYS A 81 PHE A 83 0 SHEET 2 AA1 3 ILE A 74 CYS A 76 -1 N CYS A 76 O LYS A 81 SHEET 3 AA1 3 VAL A 107 LEU A 109 -1 O SER A 108 N LYS A 75 SHEET 1 AA2 3 VAL A 144 CYS A 148 0 SHEET 2 AA2 3 LEU A 133 SER A 137 -1 N GLY A 134 O LEU A 147 SHEET 3 AA2 3 GLN A 166 PRO A 167 -1 O GLN A 166 N PHE A 135 SHEET 1 AA3 2 ILE A 169 GLU A 170 0 SHEET 2 AA3 2 GLN A 173 LEU A 174 -1 O GLN A 173 N GLU A 170 SHEET 1 AA4 7 LEU A 262 LEU A 271 0 SHEET 2 AA4 7 HIS A 277 THR A 282 -1 O LEU A 278 N SER A 270 SHEET 3 AA4 7 THR A 327 LEU A 332 -1 O LEU A 330 N ALA A 279 SHEET 4 AA4 7 TRP A 311 ARG A 319 -1 N TYR A 316 O GLU A 331 SHEET 5 AA4 7 GLU A 298 TYR A 303 -1 N LEU A 301 O GLY A 313 SHEET 6 AA4 7 PHE A 347 PHE A 351 -1 O GLU A 350 N ILE A 300 SHEET 7 AA4 7 LEU A 262 LEU A 271 -1 N LEU A 262 O ALA A 349 SHEET 1 AA5 3 ILE A 391 PHE A 393 0 SHEET 2 AA5 3 GLU C 196 THR C 200 1 O ILE C 198 N SER A 392 SHEET 3 AA5 3 THR C 187 GLU C 190 -1 N THR C 187 O ARG C 199 SHEET 1 AA6 7 VAL A 479 ARG A 481 0 SHEET 2 AA6 7 VAL A 549 CYS A 551 1 O CYS A 551 N VAL A 480 SHEET 3 AA6 7 ILE A 455 CYS A 458 1 N ILE A 455 O VAL A 550 SHEET 4 AA6 7 THR A 568 ILE A 571 1 O THR A 568 N LEU A 456 SHEET 5 AA6 7 GLN A 592 VAL A 596 1 O VAL A 596 N ILE A 571 SHEET 6 AA6 7 LEU A 427 GLN A 429 1 N ILE A 428 O LEU A 595 SHEET 7 AA6 7 ILE A 632 ARG A 633 1 O ILE A 632 N LEU A 427 SHEET 1 AA7 2 VAL A 636 GLN A 637 0 SHEET 2 AA7 2 GLN A 658 ASN A 659 1 O GLN A 658 N GLN A 637 SHEET 1 AA8 7 GLU A 758 SER A 761 0 SHEET 2 AA8 7 ILE A 726 THR A 730 1 N VAL A 728 O ALA A 760 SHEET 3 AA8 7 LYS A 770 SER A 776 1 O TYR A 772 N GLY A 727 SHEET 4 AA8 7 ALA A 802 GLY A 810 1 O VAL A 807 N LEU A 775 SHEET 5 AA8 7 MET A 682 ALA A 686 1 N TRP A 685 O ILE A 808 SHEET 6 AA8 7 LEU A 834 GLU A 836 1 O VAL A 835 N PHE A 684 SHEET 7 AA8 7 GLN A 843 LEU A 844 -1 O GLN A 843 N GLU A 836 CISPEP 1 ILE A 150 PRO A 151 0 -6.21 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 6300 GLN A 853 TER 10795 ASN B 569 TER 11205 PRO C 218 TER 11386 U D 28 MASTER 845 0 0 63 34 0 0 611382 4 0 163 END