data_9QFM # _entry.id 9QFM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.413 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9QFM pdb_00009qfm 10.2210/pdb9qfm/pdb WWPDB D_1292145376 ? ? EMDB EMD-53117 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-04-15 ? 2 'EM metadata' 1 0 2026-04-15 ? 3 'Half map' 1 0 2026-04-15 1 4 'Half map' 1 0 2026-04-15 2 5 Image 1 0 2026-04-15 ? 6 Mask 1 0 2026-04-15 1 7 'Primary map' 1 0 2026-04-15 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Half map' repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 Image repository 'Initial release' ? ? 6 6 Mask repository 'Initial release' ? ? 7 7 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9QFM _pdbx_database_status.recvd_initial_deposition_date 2025-03-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'LY12 Main Morphology' _pdbx_database_related.db_id EMD-53117 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 3 _pdbx_contact_author.email marcus.faendrich@uni-ulm.de _pdbx_contact_author.name_first Marcus _pdbx_contact_author.name_last Faendrich _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-2123-6816 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Stoyanov, N.' 1 ? 'Schmidt, M.' 2 ? 'Faendrich, M.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Int.J.Biol.Macromol. _citation.journal_id_ASTM IJBMDR _citation.journal_id_CSD 0708 _citation.journal_id_ISSN 0141-8130 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first 151751 _citation.page_last 151751 _citation.title 'A fragment of 12S seed storage protein of Arabidopsis forms twisted cross beta-sheet rich amyloid fibrils.' _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.ijbiomac.2026.151751 _citation.pdbx_database_id_PubMed 41932473 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kumar, V.' 1 ? primary 'Stoyanov, N.' 2 ? primary 'Kaushik, V.' 3 ? primary 'Kumar, S.' 4 ? primary 'Schmidt, M.' 5 ? primary 'Fandrich, M.' 6 ? primary 'Segal, D.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description '12S seed storage protein CRC alpha chain' _entity.formula_weight 1330.613 _entity.pdbx_number_of_molecules 36 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name '12S seed storage protein CRC acidic chain' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code LVIIALLDIANY _entity_poly.pdbx_seq_one_letter_code_can LVIIALLDIANY _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H,I,J,a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,p,q,r,s,t,u,v,w,x,y,z _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 VAL n 1 3 ILE n 1 4 ILE n 1 5 ALA n 1 6 LEU n 1 7 LEU n 1 8 ASP n 1 9 ILE n 1 10 ALA n 1 11 ASN n 1 12 TYR n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 12 _pdbx_entity_src_syn.organism_scientific 'Arabidopsis thaliana' _pdbx_entity_src_syn.organism_common_name 'thale cress' _pdbx_entity_src_syn.ncbi_taxonomy_id 3702 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 223 223 LEU LEU A . n A 1 2 VAL 2 224 224 VAL VAL A . n A 1 3 ILE 3 225 225 ILE ILE A . n A 1 4 ILE 4 226 226 ILE ILE A . n A 1 5 ALA 5 227 227 ALA ALA A . n A 1 6 LEU 6 228 228 LEU LEU A . n A 1 7 LEU 7 229 229 LEU LEU A . n A 1 8 ASP 8 230 230 ASP ASP A . n A 1 9 ILE 9 231 231 ILE ILE A . n A 1 10 ALA 10 232 232 ALA ALA A . n A 1 11 ASN 11 233 233 ASN ASN A . n A 1 12 TYR 12 234 234 TYR TYR A . n B 1 1 LEU 1 223 223 LEU LEU B . n B 1 2 VAL 2 224 224 VAL VAL B . n B 1 3 ILE 3 225 225 ILE ILE B . n B 1 4 ILE 4 226 226 ILE ILE B . n B 1 5 ALA 5 227 227 ALA ALA B . n B 1 6 LEU 6 228 228 LEU LEU B . n B 1 7 LEU 7 229 229 LEU LEU B . n B 1 8 ASP 8 230 230 ASP ASP B . n B 1 9 ILE 9 231 231 ILE ILE B . n B 1 10 ALA 10 232 232 ALA ALA B . n B 1 11 ASN 11 233 ? ? ? B . n B 1 12 TYR 12 234 ? ? ? B . n C 1 1 LEU 1 223 223 LEU LEU C . n C 1 2 VAL 2 224 224 VAL VAL C . n C 1 3 ILE 3 225 225 ILE ILE C . n C 1 4 ILE 4 226 226 ILE ILE C . n C 1 5 ALA 5 227 227 ALA ALA C . n C 1 6 LEU 6 228 228 LEU LEU C . n C 1 7 LEU 7 229 229 LEU LEU C . n C 1 8 ASP 8 230 230 ASP ASP C . n C 1 9 ILE 9 231 231 ILE ILE C . n C 1 10 ALA 10 232 232 ALA ALA C . n C 1 11 ASN 11 233 ? ? ? C . n C 1 12 TYR 12 234 ? ? ? C . n D 1 1 LEU 1 223 223 LEU LEU D . n D 1 2 VAL 2 224 224 VAL VAL D . n D 1 3 ILE 3 225 225 ILE ILE D . n D 1 4 ILE 4 226 226 ILE ILE D . n D 1 5 ALA 5 227 227 ALA ALA D . n D 1 6 LEU 6 228 228 LEU LEU D . n D 1 7 LEU 7 229 229 LEU LEU D . n D 1 8 ASP 8 230 230 ASP ASP D . n D 1 9 ILE 9 231 231 ILE ILE D . n D 1 10 ALA 10 232 232 ALA ALA D . n D 1 11 ASN 11 233 233 ASN ASN D . n D 1 12 TYR 12 234 234 TYR TYR D . n E 1 1 LEU 1 223 223 LEU LEU E . n E 1 2 VAL 2 224 224 VAL VAL E . n E 1 3 ILE 3 225 225 ILE ILE E . n E 1 4 ILE 4 226 226 ILE ILE E . n E 1 5 ALA 5 227 227 ALA ALA E . n E 1 6 LEU 6 228 228 LEU LEU E . n E 1 7 LEU 7 229 229 LEU LEU E . n E 1 8 ASP 8 230 230 ASP ASP E . n E 1 9 ILE 9 231 231 ILE ILE E . n E 1 10 ALA 10 232 232 ALA ALA E . n E 1 11 ASN 11 233 233 ASN ASN E . n E 1 12 TYR 12 234 234 TYR TYR E . n F 1 1 LEU 1 223 223 LEU LEU F . n F 1 2 VAL 2 224 224 VAL VAL F . n F 1 3 ILE 3 225 225 ILE ILE F . n F 1 4 ILE 4 226 226 ILE ILE F . n F 1 5 ALA 5 227 227 ALA ALA F . n F 1 6 LEU 6 228 228 LEU LEU F . n F 1 7 LEU 7 229 229 LEU LEU F . n F 1 8 ASP 8 230 230 ASP ASP F . n F 1 9 ILE 9 231 231 ILE ILE F . n F 1 10 ALA 10 232 232 ALA ALA F . n F 1 11 ASN 11 233 233 ASN ASN F . n F 1 12 TYR 12 234 234 TYR TYR F . n G 1 1 LEU 1 223 223 LEU LEU G . n G 1 2 VAL 2 224 224 VAL VAL G . n G 1 3 ILE 3 225 225 ILE ILE G . n G 1 4 ILE 4 226 226 ILE ILE G . n G 1 5 ALA 5 227 227 ALA ALA G . n G 1 6 LEU 6 228 228 LEU LEU G . n G 1 7 LEU 7 229 229 LEU LEU G . n G 1 8 ASP 8 230 230 ASP ASP G . n G 1 9 ILE 9 231 231 ILE ILE G . n G 1 10 ALA 10 232 232 ALA ALA G . n G 1 11 ASN 11 233 ? ? ? G . n G 1 12 TYR 12 234 ? ? ? G . n H 1 1 LEU 1 223 223 LEU LEU H . n H 1 2 VAL 2 224 224 VAL VAL H . n H 1 3 ILE 3 225 225 ILE ILE H . n H 1 4 ILE 4 226 226 ILE ILE H . n H 1 5 ALA 5 227 227 ALA ALA H . n H 1 6 LEU 6 228 228 LEU LEU H . n H 1 7 LEU 7 229 229 LEU LEU H . n H 1 8 ASP 8 230 230 ASP ASP H . n H 1 9 ILE 9 231 231 ILE ILE H . n H 1 10 ALA 10 232 232 ALA ALA H . n H 1 11 ASN 11 233 233 ASN ASN H . n H 1 12 TYR 12 234 234 TYR TYR H . n I 1 1 LEU 1 223 223 LEU LEU I . n I 1 2 VAL 2 224 224 VAL VAL I . n I 1 3 ILE 3 225 225 ILE ILE I . n I 1 4 ILE 4 226 226 ILE ILE I . n I 1 5 ALA 5 227 227 ALA ALA I . n I 1 6 LEU 6 228 228 LEU LEU I . n I 1 7 LEU 7 229 229 LEU LEU I . n I 1 8 ASP 8 230 230 ASP ASP I . n I 1 9 ILE 9 231 231 ILE ILE I . n I 1 10 ALA 10 232 232 ALA ALA I . n I 1 11 ASN 11 233 233 ASN ASN I . n I 1 12 TYR 12 234 234 TYR TYR I . n J 1 1 LEU 1 223 223 LEU LEU J . n J 1 2 VAL 2 224 224 VAL VAL J . n J 1 3 ILE 3 225 225 ILE ILE J . n J 1 4 ILE 4 226 226 ILE ILE J . n J 1 5 ALA 5 227 227 ALA ALA J . n J 1 6 LEU 6 228 228 LEU LEU J . n J 1 7 LEU 7 229 229 LEU LEU J . n J 1 8 ASP 8 230 230 ASP ASP J . n J 1 9 ILE 9 231 231 ILE ILE J . n J 1 10 ALA 10 232 232 ALA ALA J . n J 1 11 ASN 11 233 ? ? ? J . n J 1 12 TYR 12 234 ? ? ? J . n K 1 1 LEU 1 223 223 LEU LEU a . n K 1 2 VAL 2 224 224 VAL VAL a . n K 1 3 ILE 3 225 225 ILE ILE a . n K 1 4 ILE 4 226 226 ILE ILE a . n K 1 5 ALA 5 227 227 ALA ALA a . n K 1 6 LEU 6 228 228 LEU LEU a . n K 1 7 LEU 7 229 229 LEU LEU a . n K 1 8 ASP 8 230 230 ASP ASP a . n K 1 9 ILE 9 231 231 ILE ILE a . n K 1 10 ALA 10 232 232 ALA ALA a . n K 1 11 ASN 11 233 233 ASN ASN a . n K 1 12 TYR 12 234 234 TYR TYR a . n L 1 1 LEU 1 223 223 LEU LEU b . n L 1 2 VAL 2 224 224 VAL VAL b . n L 1 3 ILE 3 225 225 ILE ILE b . n L 1 4 ILE 4 226 226 ILE ILE b . n L 1 5 ALA 5 227 227 ALA ALA b . n L 1 6 LEU 6 228 228 LEU LEU b . n L 1 7 LEU 7 229 229 LEU LEU b . n L 1 8 ASP 8 230 230 ASP ASP b . n L 1 9 ILE 9 231 231 ILE ILE b . n L 1 10 ALA 10 232 232 ALA ALA b . n L 1 11 ASN 11 233 ? ? ? b . n L 1 12 TYR 12 234 ? ? ? b . n M 1 1 LEU 1 223 223 LEU LEU c . n M 1 2 VAL 2 224 224 VAL VAL c . n M 1 3 ILE 3 225 225 ILE ILE c . n M 1 4 ILE 4 226 226 ILE ILE c . n M 1 5 ALA 5 227 227 ALA ALA c . n M 1 6 LEU 6 228 228 LEU LEU c . n M 1 7 LEU 7 229 229 LEU LEU c . n M 1 8 ASP 8 230 230 ASP ASP c . n M 1 9 ILE 9 231 231 ILE ILE c . n M 1 10 ALA 10 232 232 ALA ALA c . n M 1 11 ASN 11 233 233 ASN ASN c . n M 1 12 TYR 12 234 234 TYR TYR c . n N 1 1 LEU 1 223 223 LEU LEU d . n N 1 2 VAL 2 224 224 VAL VAL d . n N 1 3 ILE 3 225 225 ILE ILE d . n N 1 4 ILE 4 226 226 ILE ILE d . n N 1 5 ALA 5 227 227 ALA ALA d . n N 1 6 LEU 6 228 228 LEU LEU d . n N 1 7 LEU 7 229 229 LEU LEU d . n N 1 8 ASP 8 230 230 ASP ASP d . n N 1 9 ILE 9 231 231 ILE ILE d . n N 1 10 ALA 10 232 232 ALA ALA d . n N 1 11 ASN 11 233 233 ASN ASN d . n N 1 12 TYR 12 234 234 TYR TYR d . n O 1 1 LEU 1 223 223 LEU LEU e . n O 1 2 VAL 2 224 224 VAL VAL e . n O 1 3 ILE 3 225 225 ILE ILE e . n O 1 4 ILE 4 226 226 ILE ILE e . n O 1 5 ALA 5 227 227 ALA ALA e . n O 1 6 LEU 6 228 228 LEU LEU e . n O 1 7 LEU 7 229 229 LEU LEU e . n O 1 8 ASP 8 230 230 ASP ASP e . n O 1 9 ILE 9 231 231 ILE ILE e . n O 1 10 ALA 10 232 232 ALA ALA e . n O 1 11 ASN 11 233 233 ASN ASN e . n O 1 12 TYR 12 234 234 TYR TYR e . n P 1 1 LEU 1 223 223 LEU LEU f . n P 1 2 VAL 2 224 224 VAL VAL f . n P 1 3 ILE 3 225 225 ILE ILE f . n P 1 4 ILE 4 226 226 ILE ILE f . n P 1 5 ALA 5 227 227 ALA ALA f . n P 1 6 LEU 6 228 228 LEU LEU f . n P 1 7 LEU 7 229 229 LEU LEU f . n P 1 8 ASP 8 230 230 ASP ASP f . n P 1 9 ILE 9 231 231 ILE ILE f . n P 1 10 ALA 10 232 232 ALA ALA f . n P 1 11 ASN 11 233 ? ? ? f . n P 1 12 TYR 12 234 ? ? ? f . n Q 1 1 LEU 1 223 223 LEU LEU g . n Q 1 2 VAL 2 224 224 VAL VAL g . n Q 1 3 ILE 3 225 225 ILE ILE g . n Q 1 4 ILE 4 226 226 ILE ILE g . n Q 1 5 ALA 5 227 227 ALA ALA g . n Q 1 6 LEU 6 228 228 LEU LEU g . n Q 1 7 LEU 7 229 229 LEU LEU g . n Q 1 8 ASP 8 230 230 ASP ASP g . n Q 1 9 ILE 9 231 231 ILE ILE g . n Q 1 10 ALA 10 232 232 ALA ALA g . n Q 1 11 ASN 11 233 233 ASN ASN g . n Q 1 12 TYR 12 234 234 TYR TYR g . n R 1 1 LEU 1 223 223 LEU LEU h . n R 1 2 VAL 2 224 224 VAL VAL h . n R 1 3 ILE 3 225 225 ILE ILE h . n R 1 4 ILE 4 226 226 ILE ILE h . n R 1 5 ALA 5 227 227 ALA ALA h . n R 1 6 LEU 6 228 228 LEU LEU h . n R 1 7 LEU 7 229 229 LEU LEU h . n R 1 8 ASP 8 230 230 ASP ASP h . n R 1 9 ILE 9 231 231 ILE ILE h . n R 1 10 ALA 10 232 232 ALA ALA h . n R 1 11 ASN 11 233 233 ASN ASN h . n R 1 12 TYR 12 234 234 TYR TYR h . n S 1 1 LEU 1 223 223 LEU LEU i . n S 1 2 VAL 2 224 224 VAL VAL i . n S 1 3 ILE 3 225 225 ILE ILE i . n S 1 4 ILE 4 226 226 ILE ILE i . n S 1 5 ALA 5 227 227 ALA ALA i . n S 1 6 LEU 6 228 228 LEU LEU i . n S 1 7 LEU 7 229 229 LEU LEU i . n S 1 8 ASP 8 230 230 ASP ASP i . n S 1 9 ILE 9 231 231 ILE ILE i . n S 1 10 ALA 10 232 232 ALA ALA i . n S 1 11 ASN 11 233 ? ? ? i . n S 1 12 TYR 12 234 ? ? ? i . n T 1 1 LEU 1 223 223 LEU LEU j . n T 1 2 VAL 2 224 224 VAL VAL j . n T 1 3 ILE 3 225 225 ILE ILE j . n T 1 4 ILE 4 226 226 ILE ILE j . n T 1 5 ALA 5 227 227 ALA ALA j . n T 1 6 LEU 6 228 228 LEU LEU j . n T 1 7 LEU 7 229 229 LEU LEU j . n T 1 8 ASP 8 230 230 ASP ASP j . n T 1 9 ILE 9 231 231 ILE ILE j . n T 1 10 ALA 10 232 232 ALA ALA j . n T 1 11 ASN 11 233 233 ASN ASN j . n T 1 12 TYR 12 234 234 TYR TYR j . n U 1 1 LEU 1 223 223 LEU LEU k . n U 1 2 VAL 2 224 224 VAL VAL k . n U 1 3 ILE 3 225 225 ILE ILE k . n U 1 4 ILE 4 226 226 ILE ILE k . n U 1 5 ALA 5 227 227 ALA ALA k . n U 1 6 LEU 6 228 228 LEU LEU k . n U 1 7 LEU 7 229 229 LEU LEU k . n U 1 8 ASP 8 230 230 ASP ASP k . n U 1 9 ILE 9 231 231 ILE ILE k . n U 1 10 ALA 10 232 232 ALA ALA k . n U 1 11 ASN 11 233 233 ASN ASN k . n U 1 12 TYR 12 234 234 TYR TYR k . n V 1 1 LEU 1 223 223 LEU LEU l . n V 1 2 VAL 2 224 224 VAL VAL l . n V 1 3 ILE 3 225 225 ILE ILE l . n V 1 4 ILE 4 226 226 ILE ILE l . n V 1 5 ALA 5 227 227 ALA ALA l . n V 1 6 LEU 6 228 228 LEU LEU l . n V 1 7 LEU 7 229 229 LEU LEU l . n V 1 8 ASP 8 230 230 ASP ASP l . n V 1 9 ILE 9 231 231 ILE ILE l . n V 1 10 ALA 10 232 232 ALA ALA l . n V 1 11 ASN 11 233 ? ? ? l . n V 1 12 TYR 12 234 ? ? ? l . n W 1 1 LEU 1 223 223 LEU LEU m . n W 1 2 VAL 2 224 224 VAL VAL m . n W 1 3 ILE 3 225 225 ILE ILE m . n W 1 4 ILE 4 226 226 ILE ILE m . n W 1 5 ALA 5 227 227 ALA ALA m . n W 1 6 LEU 6 228 228 LEU LEU m . n W 1 7 LEU 7 229 229 LEU LEU m . n W 1 8 ASP 8 230 230 ASP ASP m . n W 1 9 ILE 9 231 231 ILE ILE m . n W 1 10 ALA 10 232 232 ALA ALA m . n W 1 11 ASN 11 233 233 ASN ASN m . n W 1 12 TYR 12 234 234 TYR TYR m . n X 1 1 LEU 1 223 223 LEU LEU n . n X 1 2 VAL 2 224 224 VAL VAL n . n X 1 3 ILE 3 225 225 ILE ILE n . n X 1 4 ILE 4 226 226 ILE ILE n . n X 1 5 ALA 5 227 227 ALA ALA n . n X 1 6 LEU 6 228 228 LEU LEU n . n X 1 7 LEU 7 229 229 LEU LEU n . n X 1 8 ASP 8 230 230 ASP ASP n . n X 1 9 ILE 9 231 231 ILE ILE n . n X 1 10 ALA 10 232 232 ALA ALA n . n X 1 11 ASN 11 233 233 ASN ASN n . n X 1 12 TYR 12 234 234 TYR TYR n . n Y 1 1 LEU 1 223 223 LEU LEU o . n Y 1 2 VAL 2 224 224 VAL VAL o . n Y 1 3 ILE 3 225 225 ILE ILE o . n Y 1 4 ILE 4 226 226 ILE ILE o . n Y 1 5 ALA 5 227 227 ALA ALA o . n Y 1 6 LEU 6 228 228 LEU LEU o . n Y 1 7 LEU 7 229 229 LEU LEU o . n Y 1 8 ASP 8 230 230 ASP ASP o . n Y 1 9 ILE 9 231 231 ILE ILE o . n Y 1 10 ALA 10 232 232 ALA ALA o . n Y 1 11 ASN 11 233 ? ? ? o . n Y 1 12 TYR 12 234 ? ? ? o . n Z 1 1 LEU 1 223 223 LEU LEU p . n Z 1 2 VAL 2 224 224 VAL VAL p . n Z 1 3 ILE 3 225 225 ILE ILE p . n Z 1 4 ILE 4 226 226 ILE ILE p . n Z 1 5 ALA 5 227 227 ALA ALA p . n Z 1 6 LEU 6 228 228 LEU LEU p . n Z 1 7 LEU 7 229 229 LEU LEU p . n Z 1 8 ASP 8 230 230 ASP ASP p . n Z 1 9 ILE 9 231 231 ILE ILE p . n Z 1 10 ALA 10 232 232 ALA ALA p . n Z 1 11 ASN 11 233 233 ASN ASN p . n Z 1 12 TYR 12 234 234 TYR TYR p . n AA 1 1 LEU 1 223 223 LEU LEU q . n AA 1 2 VAL 2 224 224 VAL VAL q . n AA 1 3 ILE 3 225 225 ILE ILE q . n AA 1 4 ILE 4 226 226 ILE ILE q . n AA 1 5 ALA 5 227 227 ALA ALA q . n AA 1 6 LEU 6 228 228 LEU LEU q . n AA 1 7 LEU 7 229 229 LEU LEU q . n AA 1 8 ASP 8 230 230 ASP ASP q . n AA 1 9 ILE 9 231 231 ILE ILE q . n AA 1 10 ALA 10 232 232 ALA ALA q . n AA 1 11 ASN 11 233 233 ASN ASN q . n AA 1 12 TYR 12 234 234 TYR TYR q . n BA 1 1 LEU 1 223 223 LEU LEU r . n BA 1 2 VAL 2 224 224 VAL VAL r . n BA 1 3 ILE 3 225 225 ILE ILE r . n BA 1 4 ILE 4 226 226 ILE ILE r . n BA 1 5 ALA 5 227 227 ALA ALA r . n BA 1 6 LEU 6 228 228 LEU LEU r . n BA 1 7 LEU 7 229 229 LEU LEU r . n BA 1 8 ASP 8 230 230 ASP ASP r . n BA 1 9 ILE 9 231 231 ILE ILE r . n BA 1 10 ALA 10 232 232 ALA ALA r . n BA 1 11 ASN 11 233 ? ? ? r . n BA 1 12 TYR 12 234 ? ? ? r . n CA 1 1 LEU 1 223 223 LEU LEU s . n CA 1 2 VAL 2 224 224 VAL VAL s . n CA 1 3 ILE 3 225 225 ILE ILE s . n CA 1 4 ILE 4 226 226 ILE ILE s . n CA 1 5 ALA 5 227 227 ALA ALA s . n CA 1 6 LEU 6 228 228 LEU LEU s . n CA 1 7 LEU 7 229 229 LEU LEU s . n CA 1 8 ASP 8 230 230 ASP ASP s . n CA 1 9 ILE 9 231 231 ILE ILE s . n CA 1 10 ALA 10 232 232 ALA ALA s . n CA 1 11 ASN 11 233 233 ASN ASN s . n CA 1 12 TYR 12 234 234 TYR TYR s . n DA 1 1 LEU 1 223 223 LEU LEU t . n DA 1 2 VAL 2 224 224 VAL VAL t . n DA 1 3 ILE 3 225 225 ILE ILE t . n DA 1 4 ILE 4 226 226 ILE ILE t . n DA 1 5 ALA 5 227 227 ALA ALA t . n DA 1 6 LEU 6 228 228 LEU LEU t . n DA 1 7 LEU 7 229 229 LEU LEU t . n DA 1 8 ASP 8 230 230 ASP ASP t . n DA 1 9 ILE 9 231 231 ILE ILE t . n DA 1 10 ALA 10 232 232 ALA ALA t . n DA 1 11 ASN 11 233 233 ASN ASN t . n DA 1 12 TYR 12 234 234 TYR TYR t . n EA 1 1 LEU 1 223 223 LEU LEU u . n EA 1 2 VAL 2 224 224 VAL VAL u . n EA 1 3 ILE 3 225 225 ILE ILE u . n EA 1 4 ILE 4 226 226 ILE ILE u . n EA 1 5 ALA 5 227 227 ALA ALA u . n EA 1 6 LEU 6 228 228 LEU LEU u . n EA 1 7 LEU 7 229 229 LEU LEU u . n EA 1 8 ASP 8 230 230 ASP ASP u . n EA 1 9 ILE 9 231 231 ILE ILE u . n EA 1 10 ALA 10 232 232 ALA ALA u . n EA 1 11 ASN 11 233 ? ? ? u . n EA 1 12 TYR 12 234 ? ? ? u . n FA 1 1 LEU 1 223 223 LEU LEU v . n FA 1 2 VAL 2 224 224 VAL VAL v . n FA 1 3 ILE 3 225 225 ILE ILE v . n FA 1 4 ILE 4 226 226 ILE ILE v . n FA 1 5 ALA 5 227 227 ALA ALA v . n FA 1 6 LEU 6 228 228 LEU LEU v . n FA 1 7 LEU 7 229 229 LEU LEU v . n FA 1 8 ASP 8 230 230 ASP ASP v . n FA 1 9 ILE 9 231 231 ILE ILE v . n FA 1 10 ALA 10 232 232 ALA ALA v . n FA 1 11 ASN 11 233 233 ASN ASN v . n FA 1 12 TYR 12 234 234 TYR TYR v . n GA 1 1 LEU 1 223 223 LEU LEU w . n GA 1 2 VAL 2 224 224 VAL VAL w . n GA 1 3 ILE 3 225 225 ILE ILE w . n GA 1 4 ILE 4 226 226 ILE ILE w . n GA 1 5 ALA 5 227 227 ALA ALA w . n GA 1 6 LEU 6 228 228 LEU LEU w . n GA 1 7 LEU 7 229 229 LEU LEU w . n GA 1 8 ASP 8 230 230 ASP ASP w . n GA 1 9 ILE 9 231 231 ILE ILE w . n GA 1 10 ALA 10 232 232 ALA ALA w . n GA 1 11 ASN 11 233 233 ASN ASN w . n GA 1 12 TYR 12 234 234 TYR TYR w . n HA 1 1 LEU 1 223 223 LEU LEU x . n HA 1 2 VAL 2 224 224 VAL VAL x . n HA 1 3 ILE 3 225 225 ILE ILE x . n HA 1 4 ILE 4 226 226 ILE ILE x . n HA 1 5 ALA 5 227 227 ALA ALA x . n HA 1 6 LEU 6 228 228 LEU LEU x . n HA 1 7 LEU 7 229 229 LEU LEU x . n HA 1 8 ASP 8 230 230 ASP ASP x . n HA 1 9 ILE 9 231 231 ILE ILE x . n HA 1 10 ALA 10 232 232 ALA ALA x . n HA 1 11 ASN 11 233 ? ? ? x . n HA 1 12 TYR 12 234 ? ? ? x . n IA 1 1 LEU 1 223 223 LEU LEU y . n IA 1 2 VAL 2 224 224 VAL VAL y . n IA 1 3 ILE 3 225 225 ILE ILE y . n IA 1 4 ILE 4 226 226 ILE ILE y . n IA 1 5 ALA 5 227 227 ALA ALA y . n IA 1 6 LEU 6 228 228 LEU LEU y . n IA 1 7 LEU 7 229 229 LEU LEU y . n IA 1 8 ASP 8 230 230 ASP ASP y . n IA 1 9 ILE 9 231 231 ILE ILE y . n IA 1 10 ALA 10 232 232 ALA ALA y . n IA 1 11 ASN 11 233 233 ASN ASN y . n IA 1 12 TYR 12 234 234 TYR TYR y . n JA 1 1 LEU 1 223 223 LEU LEU z . n JA 1 2 VAL 2 224 224 VAL VAL z . n JA 1 3 ILE 3 225 225 ILE ILE z . n JA 1 4 ILE 4 226 226 ILE ILE z . n JA 1 5 ALA 5 227 227 ALA ALA z . n JA 1 6 LEU 6 228 228 LEU LEU z . n JA 1 7 LEU 7 229 229 LEU LEU z . n JA 1 8 ASP 8 230 230 ASP ASP z . n JA 1 9 ILE 9 231 231 ILE ILE z . n JA 1 10 ALA 10 232 232 ALA ALA z . n JA 1 11 ASN 11 233 233 ASN ASN z . n JA 1 12 TYR 12 234 234 TYR TYR z . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9QFM _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9QFM _struct.title 'LY12 Main Morphology' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9QFM _struct_keywords.text 'amyloid fibril, seed storage protein, in vitro, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 1 ? L N N 1 ? M N N 1 ? N N N 1 ? O N N 1 ? P N N 1 ? Q N N 1 ? R N N 1 ? S N N 1 ? T N N 1 ? U N N 1 ? V N N 1 ? W N N 1 ? X N N 1 ? Y N N 1 ? Z N N 1 ? AA N N 1 ? BA N N 1 ? CA N N 1 ? DA N N 1 ? EA N N 1 ? FA N N 1 ? GA N N 1 ? HA N N 1 ? IA N N 1 ? JA N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CRU3_ARATH _struct_ref.pdbx_db_accession Q96318 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code LVIIALLDIANY _struct_ref.pdbx_align_begin 223 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9QFM A 1 ? 12 ? Q96318 223 ? 234 ? 223 234 2 1 9QFM B 1 ? 12 ? Q96318 223 ? 234 ? 223 234 3 1 9QFM C 1 ? 12 ? Q96318 223 ? 234 ? 223 234 4 1 9QFM D 1 ? 12 ? Q96318 223 ? 234 ? 223 234 5 1 9QFM E 1 ? 12 ? Q96318 223 ? 234 ? 223 234 6 1 9QFM F 1 ? 12 ? Q96318 223 ? 234 ? 223 234 7 1 9QFM G 1 ? 12 ? Q96318 223 ? 234 ? 223 234 8 1 9QFM H 1 ? 12 ? Q96318 223 ? 234 ? 223 234 9 1 9QFM I 1 ? 12 ? Q96318 223 ? 234 ? 223 234 10 1 9QFM J 1 ? 12 ? Q96318 223 ? 234 ? 223 234 11 1 9QFM a 1 ? 12 ? Q96318 223 ? 234 ? 223 234 12 1 9QFM b 1 ? 12 ? Q96318 223 ? 234 ? 223 234 13 1 9QFM c 1 ? 12 ? Q96318 223 ? 234 ? 223 234 14 1 9QFM d 1 ? 12 ? Q96318 223 ? 234 ? 223 234 15 1 9QFM e 1 ? 12 ? Q96318 223 ? 234 ? 223 234 16 1 9QFM f 1 ? 12 ? Q96318 223 ? 234 ? 223 234 17 1 9QFM g 1 ? 12 ? Q96318 223 ? 234 ? 223 234 18 1 9QFM h 1 ? 12 ? Q96318 223 ? 234 ? 223 234 19 1 9QFM i 1 ? 12 ? Q96318 223 ? 234 ? 223 234 20 1 9QFM j 1 ? 12 ? Q96318 223 ? 234 ? 223 234 21 1 9QFM k 1 ? 12 ? Q96318 223 ? 234 ? 223 234 22 1 9QFM l 1 ? 12 ? Q96318 223 ? 234 ? 223 234 23 1 9QFM m 1 ? 12 ? Q96318 223 ? 234 ? 223 234 24 1 9QFM n 1 ? 12 ? Q96318 223 ? 234 ? 223 234 25 1 9QFM o 1 ? 12 ? Q96318 223 ? 234 ? 223 234 26 1 9QFM p 1 ? 12 ? Q96318 223 ? 234 ? 223 234 27 1 9QFM q 1 ? 12 ? Q96318 223 ? 234 ? 223 234 28 1 9QFM r 1 ? 12 ? Q96318 223 ? 234 ? 223 234 29 1 9QFM s 1 ? 12 ? Q96318 223 ? 234 ? 223 234 30 1 9QFM t 1 ? 12 ? Q96318 223 ? 234 ? 223 234 31 1 9QFM u 1 ? 12 ? Q96318 223 ? 234 ? 223 234 32 1 9QFM v 1 ? 12 ? Q96318 223 ? 234 ? 223 234 33 1 9QFM w 1 ? 12 ? Q96318 223 ? 234 ? 223 234 34 1 9QFM x 1 ? 12 ? Q96318 223 ? 234 ? 223 234 35 1 9QFM y 1 ? 12 ? Q96318 223 ? 234 ? 223 234 36 1 9QFM z 1 ? 12 ? Q96318 223 ? 234 ? 223 234 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 36-meric _pdbx_struct_assembly.oligomeric_count 36 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 6 ? AA3 ? 6 ? AA4 ? 6 ? AA5 ? 6 ? AA6 ? 6 ? AA7 ? 6 ? AA8 ? 6 ? AA9 ? 6 ? AB1 ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel AA2 5 6 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA3 4 5 ? parallel AA3 5 6 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA4 3 4 ? parallel AA4 4 5 ? parallel AA4 5 6 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA5 3 4 ? parallel AA5 4 5 ? parallel AA5 5 6 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA6 3 4 ? parallel AA6 4 5 ? parallel AA6 5 6 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA7 3 4 ? parallel AA7 4 5 ? parallel AA7 5 6 ? parallel AA8 1 2 ? parallel AA8 2 3 ? parallel AA8 3 4 ? parallel AA8 4 5 ? parallel AA8 5 6 ? parallel AA9 1 2 ? parallel AA9 2 3 ? parallel AA9 3 4 ? parallel AA9 4 5 ? parallel AA9 5 6 ? parallel AB1 1 2 ? parallel AB1 2 3 ? parallel AB1 3 4 ? parallel AB1 4 5 ? parallel AB1 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL F 2 ? ILE F 3 ? VAL F 224 ILE F 225 AA1 2 VAL A 2 ? ILE A 3 ? VAL A 224 ILE A 225 AA1 3 VAL DA 2 ? ILE DA 3 ? VAL t 224 ILE t 225 AA1 4 VAL X 2 ? ILE X 3 ? VAL n 224 ILE n 225 AA1 5 VAL R 2 ? ILE R 3 ? VAL h 224 ILE h 225 AA1 6 VAL K 2 ? ILE K 3 ? VAL a 224 ILE a 225 AA2 1 LEU F 6 ? ASN F 11 ? LEU F 228 ASN F 233 AA2 2 LEU A 6 ? ASN A 11 ? LEU A 228 ASN A 233 AA2 3 LEU DA 6 ? ASN DA 11 ? LEU t 228 ASN t 233 AA2 4 LEU X 6 ? ASN X 11 ? LEU n 228 ASN n 233 AA2 5 LEU R 6 ? ASN R 11 ? LEU h 228 ASN h 233 AA2 6 LEU K 6 ? ASN K 11 ? LEU a 228 ASN a 233 AA3 1 VAL G 2 ? ASP G 8 ? VAL G 224 ASP G 230 AA3 2 VAL B 2 ? ASP B 8 ? VAL B 224 ASP B 230 AA3 3 VAL EA 2 ? ASP EA 8 ? VAL u 224 ASP u 230 AA3 4 VAL Y 2 ? ASP Y 8 ? VAL o 224 ASP o 230 AA3 5 VAL S 2 ? ASP S 8 ? VAL i 224 ASP i 230 AA3 6 VAL L 2 ? ASP L 8 ? VAL b 224 ASP b 230 AA4 1 VAL J 2 ? ASP J 8 ? VAL J 224 ASP J 230 AA4 2 VAL C 2 ? ASP C 8 ? VAL C 224 ASP C 230 AA4 3 VAL HA 2 ? ASP HA 8 ? VAL x 224 ASP x 230 AA4 4 VAL BA 2 ? ASP BA 8 ? VAL r 224 ASP r 230 AA4 5 VAL V 2 ? ASP V 8 ? VAL l 224 ASP l 230 AA4 6 VAL P 2 ? ASP P 8 ? VAL f 224 ASP f 230 AA5 1 VAL H 2 ? LEU H 7 ? VAL H 224 LEU H 229 AA5 2 VAL D 2 ? LEU D 7 ? VAL D 224 LEU D 229 AA5 3 VAL FA 2 ? LEU FA 7 ? VAL v 224 LEU v 229 AA5 4 VAL Z 2 ? LEU Z 7 ? VAL p 224 LEU p 229 AA5 5 VAL T 2 ? LEU T 7 ? VAL j 224 LEU j 229 AA5 6 VAL N 2 ? LEU N 7 ? VAL d 224 LEU d 229 AA6 1 ALA H 10 ? ASN H 11 ? ALA H 232 ASN H 233 AA6 2 ALA D 10 ? ASN D 11 ? ALA D 232 ASN D 233 AA6 3 ALA FA 10 ? ASN FA 11 ? ALA v 232 ASN v 233 AA6 4 ALA Z 10 ? ASN Z 11 ? ALA p 232 ASN p 233 AA6 5 ALA T 10 ? ASN T 11 ? ALA j 232 ASN j 233 AA6 6 ALA N 10 ? ASN N 11 ? ALA d 232 ASN d 233 AA7 1 VAL I 2 ? ILE I 3 ? VAL I 224 ILE I 225 AA7 2 VAL E 2 ? ILE E 3 ? VAL E 224 ILE E 225 AA7 3 VAL GA 2 ? ILE GA 3 ? VAL w 224 ILE w 225 AA7 4 VAL AA 2 ? ILE AA 3 ? VAL q 224 ILE q 225 AA7 5 VAL U 2 ? ILE U 3 ? VAL k 224 ILE k 225 AA7 6 VAL O 2 ? ILE O 3 ? VAL e 224 ILE e 225 AA8 1 LEU I 6 ? ASN I 11 ? LEU I 228 ASN I 233 AA8 2 LEU E 6 ? ASN E 11 ? LEU E 228 ASN E 233 AA8 3 LEU GA 6 ? ASN GA 11 ? LEU w 228 ASN w 233 AA8 4 LEU AA 6 ? ASN AA 11 ? LEU q 228 ASN q 233 AA8 5 LEU U 6 ? ASN U 11 ? LEU k 228 ASN k 233 AA8 6 LEU O 6 ? ASN O 11 ? LEU e 228 ASN e 233 AA9 1 VAL M 2 ? LEU M 7 ? VAL c 224 LEU c 229 AA9 2 VAL JA 2 ? LEU JA 7 ? VAL z 224 LEU z 229 AA9 3 VAL IA 2 ? LEU IA 7 ? VAL y 224 LEU y 229 AA9 4 VAL CA 2 ? LEU CA 7 ? VAL s 224 LEU s 229 AA9 5 VAL W 2 ? LEU W 7 ? VAL m 224 LEU m 229 AA9 6 VAL Q 2 ? LEU Q 7 ? VAL g 224 LEU g 229 AB1 1 ALA M 10 ? ASN M 11 ? ALA c 232 ASN c 233 AB1 2 ALA JA 10 ? ASN JA 11 ? ALA z 232 ASN z 233 AB1 3 ALA IA 10 ? ASN IA 11 ? ALA y 232 ASN y 233 AB1 4 ALA CA 10 ? ASN CA 11 ? ALA s 232 ASN s 233 AB1 5 ALA W 10 ? ASN W 11 ? ALA m 232 ASN m 233 AB1 6 ALA Q 10 ? ASN Q 11 ? ALA g 232 ASN g 233 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O VAL F 2 ? O VAL F 224 N ILE A 3 ? N ILE A 225 AA1 2 3 N VAL A 2 ? N VAL A 224 O ILE DA 3 ? O ILE t 225 AA1 3 4 O VAL DA 2 ? O VAL t 224 N ILE X 3 ? N ILE n 225 AA1 4 5 O VAL X 2 ? O VAL n 224 N ILE R 3 ? N ILE h 225 AA1 5 6 O VAL R 2 ? O VAL h 224 N ILE K 3 ? N ILE a 225 AA2 1 2 O ILE F 9 ? O ILE F 231 N ALA A 10 ? N ALA A 232 AA2 2 3 N ILE A 9 ? N ILE A 231 O ALA DA 10 ? O ALA t 232 AA2 3 4 O ILE DA 9 ? O ILE t 231 N ALA X 10 ? N ALA n 232 AA2 4 5 O ILE X 9 ? O ILE n 231 N ALA R 10 ? N ALA h 232 AA2 5 6 O ILE R 9 ? O ILE h 231 N ALA K 10 ? N ALA a 232 AA3 1 2 O ILE G 3 ? O ILE G 225 N ILE B 4 ? N ILE B 226 AA3 2 3 N ILE B 3 ? N ILE B 225 O ILE EA 4 ? O ILE u 226 AA3 3 4 O ILE EA 3 ? O ILE u 225 N ILE Y 4 ? N ILE o 226 AA3 4 5 O ILE Y 3 ? O ILE o 225 N ILE S 4 ? N ILE i 226 AA3 5 6 O ILE S 3 ? O ILE i 225 N ILE L 4 ? N ILE b 226 AA4 1 2 O ILE J 3 ? O ILE J 225 N ILE C 4 ? N ILE C 226 AA4 2 3 N ILE C 3 ? N ILE C 225 O ILE HA 4 ? O ILE x 226 AA4 3 4 O ILE HA 3 ? O ILE x 225 N ILE BA 4 ? N ILE r 226 AA4 4 5 O ILE BA 3 ? O ILE r 225 N ILE V 4 ? N ILE l 226 AA4 5 6 O ILE V 3 ? O ILE l 225 N ILE P 4 ? N ILE f 226 AA5 1 2 O LEU H 6 ? O LEU H 228 N ALA D 5 ? N ALA D 227 AA5 2 3 N LEU D 6 ? N LEU D 228 O ALA FA 5 ? O ALA v 227 AA5 3 4 O LEU FA 6 ? O LEU v 228 N ALA Z 5 ? N ALA p 227 AA5 4 5 O LEU Z 6 ? O LEU p 228 N ALA T 5 ? N ALA j 227 AA5 5 6 O LEU T 6 ? O LEU j 228 N ALA N 5 ? N ALA d 227 AA6 1 2 O ALA H 10 ? O ALA H 232 N ASN D 11 ? N ASN D 233 AA6 2 3 N ALA D 10 ? N ALA D 232 O ASN FA 11 ? O ASN v 233 AA6 3 4 O ALA FA 10 ? O ALA v 232 N ASN Z 11 ? N ASN p 233 AA6 4 5 O ALA Z 10 ? O ALA p 232 N ASN T 11 ? N ASN j 233 AA6 5 6 O ALA T 10 ? O ALA j 232 N ASN N 11 ? N ASN d 233 AA7 1 2 O VAL I 2 ? O VAL I 224 N ILE E 3 ? N ILE E 225 AA7 2 3 N VAL E 2 ? N VAL E 224 O ILE GA 3 ? O ILE w 225 AA7 3 4 O VAL GA 2 ? O VAL w 224 N ILE AA 3 ? N ILE q 225 AA7 4 5 O VAL AA 2 ? O VAL q 224 N ILE U 3 ? N ILE k 225 AA7 5 6 O VAL U 2 ? O VAL k 224 N ILE O 3 ? N ILE e 225 AA8 1 2 O ILE I 9 ? O ILE I 231 N ALA E 10 ? N ALA E 232 AA8 2 3 N ILE E 9 ? N ILE E 231 O ALA GA 10 ? O ALA w 232 AA8 3 4 O ILE GA 9 ? O ILE w 231 N ALA AA 10 ? N ALA q 232 AA8 4 5 O ILE AA 9 ? O ILE q 231 N ALA U 10 ? N ALA k 232 AA8 5 6 O ILE U 9 ? O ILE k 231 N ALA O 10 ? N ALA e 232 AA9 1 2 N LEU M 6 ? N LEU c 228 O ALA JA 5 ? O ALA z 227 AA9 2 3 O LEU JA 6 ? O LEU z 228 N ALA IA 5 ? N ALA y 227 AA9 3 4 O LEU IA 6 ? O LEU y 228 N ALA CA 5 ? N ALA s 227 AA9 4 5 O LEU CA 6 ? O LEU s 228 N ALA W 5 ? N ALA m 227 AA9 5 6 O LEU W 6 ? O LEU m 228 N ALA Q 5 ? N ALA g 227 AB1 1 2 N ALA M 10 ? N ALA c 232 O ASN JA 11 ? O ASN z 233 AB1 2 3 O ALA JA 10 ? O ALA z 232 N ASN IA 11 ? N ASN y 233 AB1 3 4 O ALA IA 10 ? O ALA y 232 N ASN CA 11 ? N ASN s 233 AB1 4 5 O ALA CA 10 ? O ALA s 232 N ASN W 11 ? N ASN m 233 AB1 5 6 O ALA W 10 ? O ALA m 232 N ASN Q 11 ? N ASN g 233 # _pdbx_entry_details.entry_id 9QFM _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9QFM _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol 'AB INITIO MODEL' # _em_3d_reconstruction.entry_id 9QFM _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.96 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 134959 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.2 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Amyloid fibril formed by the aggregation of a 12 aa long fragment from cruciferin 3 (223-234) from A. thaliana.' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9QFM _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'SPOT SCAN' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 600 _em_imaging.nominal_defocus_max 1500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 165000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter 50.0 _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type C-flat-1.2/1.3 _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 9QFM _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 95 _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument 'LEICA PLUNGER' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9QFM _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B ASN 233 ? B ASN 11 2 1 Y 1 B TYR 234 ? B TYR 12 3 1 Y 1 C ASN 233 ? C ASN 11 4 1 Y 1 C TYR 234 ? C TYR 12 5 1 Y 1 G ASN 233 ? G ASN 11 6 1 Y 1 G TYR 234 ? G TYR 12 7 1 Y 1 J ASN 233 ? J ASN 11 8 1 Y 1 J TYR 234 ? J TYR 12 9 1 Y 1 b ASN 233 ? L ASN 11 10 1 Y 1 b TYR 234 ? L TYR 12 11 1 Y 1 f ASN 233 ? P ASN 11 12 1 Y 1 f TYR 234 ? P TYR 12 13 1 Y 1 i ASN 233 ? S ASN 11 14 1 Y 1 i TYR 234 ? S TYR 12 15 1 Y 1 l ASN 233 ? V ASN 11 16 1 Y 1 l TYR 234 ? V TYR 12 17 1 Y 1 o ASN 233 ? Y ASN 11 18 1 Y 1 o TYR 234 ? Y TYR 12 19 1 Y 1 r ASN 233 ? BA ASN 11 20 1 Y 1 r TYR 234 ? BA TYR 12 21 1 Y 1 u ASN 233 ? EA ASN 11 22 1 Y 1 u TYR 234 ? EA TYR 12 23 1 Y 1 x ASN 233 ? HA ASN 11 24 1 Y 1 x TYR 234 ? HA TYR 12 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 ASP N N N N 31 ASP CA C N S 32 ASP C C N N 33 ASP O O N N 34 ASP CB C N N 35 ASP CG C N N 36 ASP OD1 O N N 37 ASP OD2 O N N 38 ASP OXT O N N 39 ASP H H N N 40 ASP H2 H N N 41 ASP HA H N N 42 ASP HB2 H N N 43 ASP HB3 H N N 44 ASP HD2 H N N 45 ASP HXT H N N 46 ILE N N N N 47 ILE CA C N S 48 ILE C C N N 49 ILE O O N N 50 ILE CB C N S 51 ILE CG1 C N N 52 ILE CG2 C N N 53 ILE CD1 C N N 54 ILE OXT O N N 55 ILE H H N N 56 ILE H2 H N N 57 ILE HA H N N 58 ILE HB H N N 59 ILE HG12 H N N 60 ILE HG13 H N N 61 ILE HG21 H N N 62 ILE HG22 H N N 63 ILE HG23 H N N 64 ILE HD11 H N N 65 ILE HD12 H N N 66 ILE HD13 H N N 67 ILE HXT H N N 68 LEU N N N N 69 LEU CA C N S 70 LEU C C N N 71 LEU O O N N 72 LEU CB C N N 73 LEU CG C N N 74 LEU CD1 C N N 75 LEU CD2 C N N 76 LEU OXT O N N 77 LEU H H N N 78 LEU H2 H N N 79 LEU HA H N N 80 LEU HB2 H N N 81 LEU HB3 H N N 82 LEU HG H N N 83 LEU HD11 H N N 84 LEU HD12 H N N 85 LEU HD13 H N N 86 LEU HD21 H N N 87 LEU HD22 H N N 88 LEU HD23 H N N 89 LEU HXT H N N 90 TYR N N N N 91 TYR CA C N S 92 TYR C C N N 93 TYR O O N N 94 TYR CB C N N 95 TYR CG C Y N 96 TYR CD1 C Y N 97 TYR CD2 C Y N 98 TYR CE1 C Y N 99 TYR CE2 C Y N 100 TYR CZ C Y N 101 TYR OH O N N 102 TYR OXT O N N 103 TYR H H N N 104 TYR H2 H N N 105 TYR HA H N N 106 TYR HB2 H N N 107 TYR HB3 H N N 108 TYR HD1 H N N 109 TYR HD2 H N N 110 TYR HE1 H N N 111 TYR HE2 H N N 112 TYR HH H N N 113 TYR HXT H N N 114 VAL N N N N 115 VAL CA C N S 116 VAL C C N N 117 VAL O O N N 118 VAL CB C N N 119 VAL CG1 C N N 120 VAL CG2 C N N 121 VAL OXT O N N 122 VAL H H N N 123 VAL H2 H N N 124 VAL HA H N N 125 VAL HB H N N 126 VAL HG11 H N N 127 VAL HG12 H N N 128 VAL HG13 H N N 129 VAL HG21 H N N 130 VAL HG22 H N N 131 VAL HG23 H N N 132 VAL HXT H N N 133 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 ASP N CA sing N N 29 ASP N H sing N N 30 ASP N H2 sing N N 31 ASP CA C sing N N 32 ASP CA CB sing N N 33 ASP CA HA sing N N 34 ASP C O doub N N 35 ASP C OXT sing N N 36 ASP CB CG sing N N 37 ASP CB HB2 sing N N 38 ASP CB HB3 sing N N 39 ASP CG OD1 doub N N 40 ASP CG OD2 sing N N 41 ASP OD2 HD2 sing N N 42 ASP OXT HXT sing N N 43 ILE N CA sing N N 44 ILE N H sing N N 45 ILE N H2 sing N N 46 ILE CA C sing N N 47 ILE CA CB sing N N 48 ILE CA HA sing N N 49 ILE C O doub N N 50 ILE C OXT sing N N 51 ILE CB CG1 sing N N 52 ILE CB CG2 sing N N 53 ILE CB HB sing N N 54 ILE CG1 CD1 sing N N 55 ILE CG1 HG12 sing N N 56 ILE CG1 HG13 sing N N 57 ILE CG2 HG21 sing N N 58 ILE CG2 HG22 sing N N 59 ILE CG2 HG23 sing N N 60 ILE CD1 HD11 sing N N 61 ILE CD1 HD12 sing N N 62 ILE CD1 HD13 sing N N 63 ILE OXT HXT sing N N 64 LEU N CA sing N N 65 LEU N H sing N N 66 LEU N H2 sing N N 67 LEU CA C sing N N 68 LEU CA CB sing N N 69 LEU CA HA sing N N 70 LEU C O doub N N 71 LEU C OXT sing N N 72 LEU CB CG sing N N 73 LEU CB HB2 sing N N 74 LEU CB HB3 sing N N 75 LEU CG CD1 sing N N 76 LEU CG CD2 sing N N 77 LEU CG HG sing N N 78 LEU CD1 HD11 sing N N 79 LEU CD1 HD12 sing N N 80 LEU CD1 HD13 sing N N 81 LEU CD2 HD21 sing N N 82 LEU CD2 HD22 sing N N 83 LEU CD2 HD23 sing N N 84 LEU OXT HXT sing N N 85 TYR N CA sing N N 86 TYR N H sing N N 87 TYR N H2 sing N N 88 TYR CA C sing N N 89 TYR CA CB sing N N 90 TYR CA HA sing N N 91 TYR C O doub N N 92 TYR C OXT sing N N 93 TYR CB CG sing N N 94 TYR CB HB2 sing N N 95 TYR CB HB3 sing N N 96 TYR CG CD1 doub Y N 97 TYR CG CD2 sing Y N 98 TYR CD1 CE1 sing Y N 99 TYR CD1 HD1 sing N N 100 TYR CD2 CE2 doub Y N 101 TYR CD2 HD2 sing N N 102 TYR CE1 CZ doub Y N 103 TYR CE1 HE1 sing N N 104 TYR CE2 CZ sing Y N 105 TYR CE2 HE2 sing N N 106 TYR CZ OH sing N N 107 TYR OH HH sing N N 108 TYR OXT HXT sing N N 109 VAL N CA sing N N 110 VAL N H sing N N 111 VAL N H2 sing N N 112 VAL CA C sing N N 113 VAL CA CB sing N N 114 VAL CA HA sing N N 115 VAL C O doub N N 116 VAL C OXT sing N N 117 VAL CB CG1 sing N N 118 VAL CB CG2 sing N N 119 VAL CB HB sing N N 120 VAL CG1 HG11 sing N N 121 VAL CG1 HG12 sing N N 122 VAL CG1 HG13 sing N N 123 VAL CG2 HG21 sing N N 124 VAL CG2 HG22 sing N N 125 VAL CG2 HG23 sing N N 126 VAL OXT HXT sing N N 127 # _em_admin.current_status REL _em_admin.deposition_date 2025-03-12 _em_admin.deposition_site PDBE _em_admin.entry_id 9QFM _em_admin.last_update 2026-04-15 _em_admin.map_release_date 2026-04-15 _em_admin.title 'LY12 Main Morphology' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 3702 _em_entity_assembly_naturalsource.organism 'Arabidopsis thaliana' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 32630 _em_entity_assembly_recombinant.organism 'synthetic construct' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C2 _em_helical_entity.angular_rotation_per_subunit -1.66 _em_helical_entity.axial_rise_per_subunit 4.78 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 6 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 52.29 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON IV (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width 10 _em_imaging_optics.energyfilter_name 'TFS Selectris X' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? RELION 5.0-beta 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? RELION 5.0-beta 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? ? ? OTHER ? 8 ? ? ? ? ? 'MODEL REFINEMENT' ? 9 ? 1 ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? RELION 5.0-beta 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? RELION 5.0-beta CLASSIFICATION ? 12 1 ? ? RELION 5.0-beta RECONSTRUCTION ? 13 1 ? ? RELION 5 # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal iNEXT-Discovery 'European Union' ? 1 'German Research Foundation (DFG)' Germany ? 2 # _atom_sites.entry_id 9QFM _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_ #