HEADER TRANSFERASE 13-MAR-25 9QGH TITLE BV333 AMINOTRANSFERASE FROM STREPTOMYCES SP. MUTANT F61C COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE AMINOTRANSFERASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP. BV333; SOURCE 3 ORGANISM_TAXID: 2849673; SOURCE 4 GENE: OIM89_06295; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.A.DE ROSE,M.N.ISUPOV,S.PATTI REVDAT 1 18-MAR-26 9QGH 0 JRNL AUTH S.PATTI,S.A.DE ROSE,M.N.ISUPOV,I.MAGRINI ALUNNO,S.RIVA, JRNL AUTH 2 E.E.FERRANDI,J.A.LITTLECHILD,D.MONTI JRNL TITL FUNCTIONAL AND STRUCTURAL INSIGHTS INTO A THERMOSTABLE JRNL TITL 2 (S)-SELECTIVE AMINE TRANSAMINASE AND ITS IMPROVED SUBSTRATE JRNL TITL 3 SCOPE BY PROTEIN ENGINEERING. JRNL REF APPL.MICROBIOL.BIOTECHNOL. V. 109 180 2025 JRNL REFN ESSN 1432-0614 JRNL PMID 40796981 JRNL DOI 10.1007/S00253-025-13536-9 REMARK 2 REMARK 2 RESOLUTION. 1.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 (REFMACAT 0.4.100) REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 88.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 221381 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 0.922 REMARK 3 FREE R VALUE TEST SET COUNT : 2041 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.34 REMARK 3 REFLECTION IN BIN (WORKING SET) : 11353 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.4020 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.3880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7044 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 601 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.30400 REMARK 3 B22 (A**2) : -0.52900 REMARK 3 B33 (A**2) : 0.83200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.051 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.053 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.065 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.875 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7236 ; 0.019 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9846 ; 2.411 ; 1.814 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 900 ; 6.450 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 44 ;11.447 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1098 ;13.091 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1060 ; 0.206 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5666 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3401 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4945 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 608 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3606 ; 2.759 ; 2.416 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4504 ; 3.607 ; 4.348 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3630 ; 5.382 ; 2.826 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 5342 ; 7.671 ; 5.007 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 9 A 459 NULL REMARK 3 1 B 9 B 459 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE NOT BEEN USED REMARK 4 REMARK 4 9QGH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1292146075. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-24 REMARK 200 TEMPERATURE (KELVIN) : 113.15 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.852 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 3.9 REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 221445 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.310 REMARK 200 RESOLUTION RANGE LOW (A) : 88.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS FUSION SCREEN A7, MICROBATCH, REMARK 280 TEMPERATURE 292.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.62950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.62950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 49.87350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 88.23200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 49.87350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 88.23200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.62950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 49.87350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 88.23200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.62950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 49.87350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 88.23200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -192.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -99.74700 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 55.62950 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 664 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 641 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 699 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 796 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 803 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB SER B 77 O HOH B 503 1.87 REMARK 500 O HOH B 709 O HOH B 777 1.96 REMARK 500 O HOH A 736 O HOH A 757 2.11 REMARK 500 OE2 GLU A 71 O HOH A 501 2.11 REMARK 500 O HOH A 509 O HOH B 507 2.12 REMARK 500 O HOH B 509 O HOH B 522 2.16 REMARK 500 O HOH A 732 O HOH B 782 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 293 CA SER A 293 CB 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 57 CB - CG - CD1 ANGL. DEV. = 13.5 DEGREES REMARK 500 ARG A 149 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 LEU A 193 CB - CG - CD1 ANGL. DEV. = 16.3 DEGREES REMARK 500 LEU A 193 CB - CG - CD2 ANGL. DEV. = -12.9 DEGREES REMARK 500 ARG A 203 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 PHE A 215 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 PHE A 357 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 LYS A 388 N - CA - CB ANGL. DEV. = -13.2 DEGREES REMARK 500 LEU A 403 CB - CG - CD2 ANGL. DEV. = 16.4 DEGREES REMARK 500 LEU A 407 CB - CG - CD1 ANGL. DEV. = 13.1 DEGREES REMARK 500 ASP B 10 CB - CA - C ANGL. DEV. = 12.7 DEGREES REMARK 500 LEU B 11 CB - CG - CD1 ANGL. DEV. = 11.1 DEGREES REMARK 500 ARG B 51 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 LEU B 57 CB - CG - CD2 ANGL. DEV. = 16.6 DEGREES REMARK 500 ARG B 102 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 149 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 149 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG B 190 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 LEU B 193 CB - CG - CD1 ANGL. DEV. = 14.2 DEGREES REMARK 500 LEU B 193 CB - CG - CD2 ANGL. DEV. = -12.9 DEGREES REMARK 500 ARG B 203 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 PHE B 215 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG B 247 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 LEU B 403 CB - CG - CD2 ANGL. DEV. = 16.7 DEGREES REMARK 500 LEU B 407 CB - CG - CD1 ANGL. DEV. = 15.2 DEGREES REMARK 500 ARG B 419 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 60 51.32 -150.03 REMARK 500 HIS A 144 -15.05 -147.08 REMARK 500 VAL A 151 -7.98 79.44 REMARK 500 LEU A 176 -147.50 -106.72 REMARK 500 THR A 186 40.69 -103.63 REMARK 500 PHE A 194 17.38 82.49 REMARK 500 ASN A 231 -72.02 -68.89 REMARK 500 ALA A 288 -125.97 -167.65 REMARK 500 LLP A 289 -99.46 38.62 REMARK 500 PHE A 378 46.69 -107.10 REMARK 500 ALA A 431 67.82 -156.07 REMARK 500 LEU B 60 53.37 -151.85 REMARK 500 LEU B 83 103.47 -160.03 REMARK 500 HIS B 144 -15.27 -143.20 REMARK 500 VAL B 151 -6.54 77.29 REMARK 500 LEU B 176 -151.19 -105.33 REMARK 500 THR B 186 41.76 -104.61 REMARK 500 ALA B 288 -125.65 -167.99 REMARK 500 LLP B 289 -100.09 38.50 REMARK 500 PHE B 378 50.64 -113.03 REMARK 500 ALA B 431 67.35 -156.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 245 0.08 SIDE CHAIN REMARK 500 TYR B 380 0.08 SIDE CHAIN REMARK 500 ARG B 419 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9GH9 RELATED DB: PDB REMARK 900 RELATED ID: 9GNF RELATED DB: PDB REMARK 900 RELATED ID: 9QC2 RELATED DB: PDB DBREF1 9QGH A 9 459 UNP A0AA46ZEV9_9ACTN DBREF2 9QGH A A0AA46ZEV9 9 459 DBREF1 9QGH B 9 459 UNP A0AA46ZEV9_9ACTN DBREF2 9QGH B A0AA46ZEV9 9 459 SEQADV 9QGH CYS A 61 UNP A0AA46ZEV PHE 61 ENGINEERED MUTATION SEQADV 9QGH CYS B 61 UNP A0AA46ZEV PHE 61 ENGINEERED MUTATION SEQRES 1 A 451 LYS ASP LEU SER ARG THR ALA TYR ASP HIS LEU TRP MET SEQRES 2 A 451 HIS PHE THR ARG MET SER SER TYR GLU SER ALA PRO VAL SEQRES 3 A 451 PRO THR ILE VAL ARG GLY GLU GLY THR TYR ILE PHE ASP SEQRES 4 A 451 ASP GLN GLY ARG ARG TYR LEU ASP GLY LEU ALA GLY LEU SEQRES 5 A 451 CYS VAL VAL GLN ALA GLY HIS GLY ARG THR GLU LEU ALA SEQRES 6 A 451 GLU ALA ALA SER LYS GLN ALA GLN ASP LEU ALA PHE PHE SEQRES 7 A 451 PRO ILE TRP SER TYR ALA HIS PRO LYS ALA VAL GLU LEU SEQRES 8 A 451 ALA GLU ARG LEU ALA HIS GLU ALA PRO GLY ASP LEU ASN SEQRES 9 A 451 LYS VAL PHE PHE THR THR GLY GLY GLY GLU ALA VAL GLU SEQRES 10 A 451 THR ALA TRP LYS LEU ALA LYS GLN TYR PHE LYS LEU THR SEQRES 11 A 451 GLY LYS PRO THR LYS HIS LYS VAL ILE SER ARG ALA VAL SEQRES 12 A 451 ALA TYR HIS GLY THR PRO GLN GLY ALA LEU SER ILE THR SEQRES 13 A 451 GLY LEU PRO ALA LEU LYS ALA PRO PHE GLU PRO LEU VAL SEQRES 14 A 451 PRO GLY ALA HIS LYS VAL PRO ASN THR ASN ILE TYR ARG SEQRES 15 A 451 ALA PRO LEU PHE GLY ASP ASP PRO GLU ALA PHE GLY ARG SEQRES 16 A 451 TRP ALA ALA ASP GLN ILE GLU GLN GLN ILE LEU PHE GLU SEQRES 17 A 451 GLY PRO GLU THR VAL ALA ALA VAL PHE LEU GLU PRO VAL SEQRES 18 A 451 GLN ASN ALA GLY GLY CYS PHE PRO PRO PRO PRO GLY TYR SEQRES 19 A 451 PHE GLN ARG VAL ARG GLU ILE CYS ASP GLN TYR ASP VAL SEQRES 20 A 451 LEU LEU VAL SER ASP GLU VAL ILE CYS ALA PHE GLY ARG SEQRES 21 A 451 LEU GLY THR THR PHE ALA CYS ASP LYS PHE GLY TYR VAL SEQRES 22 A 451 PRO ASP MET ILE THR CYS ALA LLP GLY MET THR SER GLY SEQRES 23 A 451 TYR SER PRO ILE GLY ALA CYS ILE ILE SER ASP ARG LEU SEQRES 24 A 451 ALA GLU PRO PHE TYR GLN GLY ASP ASN THR PHE LEU HIS SEQRES 25 A 451 GLY TYR THR PHE GLY GLY HIS PRO VAL SER SER ALA VAL SEQRES 26 A 451 ALA LEU ALA ASN LEU ASP ILE PHE ASP ARG GLU GLY LEU SEQRES 27 A 451 ASN GLN HIS VAL LEU ASP ASN GLU GLY THR PHE PHE ALA SEQRES 28 A 451 THR LEU GLN LYS LEU HIS ASP LEU PRO ILE VAL GLY ASP SEQRES 29 A 451 VAL ARG GLY ASN GLY PHE PHE TYR GLY ILE GLU LEU VAL SEQRES 30 A 451 LYS ASP LYS ALA THR LYS GLU THR PHE THR GLU GLU GLU SEQRES 31 A 451 THR GLU ARG VAL LEU TYR GLY PHE LEU SER LYS ALA LEU SEQRES 32 A 451 PHE ASP ASN GLY LEU TYR CYS ARG ALA ASP ASP ARG GLY SEQRES 33 A 451 ASP PRO VAL ILE GLN LEU ALA PRO PRO LEU ILE SER ASP SEQRES 34 A 451 GLN SER THR PHE ASP GLU ILE GLU GLY ILE LEU ARG THR SEQRES 35 A 451 VAL LEU THR GLU ALA TRP THR LYS LEU SEQRES 1 B 451 LYS ASP LEU SER ARG THR ALA TYR ASP HIS LEU TRP MET SEQRES 2 B 451 HIS PHE THR ARG MET SER SER TYR GLU SER ALA PRO VAL SEQRES 3 B 451 PRO THR ILE VAL ARG GLY GLU GLY THR TYR ILE PHE ASP SEQRES 4 B 451 ASP GLN GLY ARG ARG TYR LEU ASP GLY LEU ALA GLY LEU SEQRES 5 B 451 CYS VAL VAL GLN ALA GLY HIS GLY ARG THR GLU LEU ALA SEQRES 6 B 451 GLU ALA ALA SER LYS GLN ALA GLN ASP LEU ALA PHE PHE SEQRES 7 B 451 PRO ILE TRP SER TYR ALA HIS PRO LYS ALA VAL GLU LEU SEQRES 8 B 451 ALA GLU ARG LEU ALA HIS GLU ALA PRO GLY ASP LEU ASN SEQRES 9 B 451 LYS VAL PHE PHE THR THR GLY GLY GLY GLU ALA VAL GLU SEQRES 10 B 451 THR ALA TRP LYS LEU ALA LYS GLN TYR PHE LYS LEU THR SEQRES 11 B 451 GLY LYS PRO THR LYS HIS LYS VAL ILE SER ARG ALA VAL SEQRES 12 B 451 ALA TYR HIS GLY THR PRO GLN GLY ALA LEU SER ILE THR SEQRES 13 B 451 GLY LEU PRO ALA LEU LYS ALA PRO PHE GLU PRO LEU VAL SEQRES 14 B 451 PRO GLY ALA HIS LYS VAL PRO ASN THR ASN ILE TYR ARG SEQRES 15 B 451 ALA PRO LEU PHE GLY ASP ASP PRO GLU ALA PHE GLY ARG SEQRES 16 B 451 TRP ALA ALA ASP GLN ILE GLU GLN GLN ILE LEU PHE GLU SEQRES 17 B 451 GLY PRO GLU THR VAL ALA ALA VAL PHE LEU GLU PRO VAL SEQRES 18 B 451 GLN ASN ALA GLY GLY CYS PHE PRO PRO PRO PRO GLY TYR SEQRES 19 B 451 PHE GLN ARG VAL ARG GLU ILE CYS ASP GLN TYR ASP VAL SEQRES 20 B 451 LEU LEU VAL SER ASP GLU VAL ILE CYS ALA PHE GLY ARG SEQRES 21 B 451 LEU GLY THR THR PHE ALA CYS ASP LYS PHE GLY TYR VAL SEQRES 22 B 451 PRO ASP MET ILE THR CYS ALA LLP GLY MET THR SER GLY SEQRES 23 B 451 TYR SER PRO ILE GLY ALA CYS ILE ILE SER ASP ARG LEU SEQRES 24 B 451 ALA GLU PRO PHE TYR GLN GLY ASP ASN THR PHE LEU HIS SEQRES 25 B 451 GLY TYR THR PHE GLY GLY HIS PRO VAL SER SER ALA VAL SEQRES 26 B 451 ALA LEU ALA ASN LEU ASP ILE PHE ASP ARG GLU GLY LEU SEQRES 27 B 451 ASN GLN HIS VAL LEU ASP ASN GLU GLY THR PHE PHE ALA SEQRES 28 B 451 THR LEU GLN LYS LEU HIS ASP LEU PRO ILE VAL GLY ASP SEQRES 29 B 451 VAL ARG GLY ASN GLY PHE PHE TYR GLY ILE GLU LEU VAL SEQRES 30 B 451 LYS ASP LYS ALA THR LYS GLU THR PHE THR GLU GLU GLU SEQRES 31 B 451 THR GLU ARG VAL LEU TYR GLY PHE LEU SER LYS ALA LEU SEQRES 32 B 451 PHE ASP ASN GLY LEU TYR CYS ARG ALA ASP ASP ARG GLY SEQRES 33 B 451 ASP PRO VAL ILE GLN LEU ALA PRO PRO LEU ILE SER ASP SEQRES 34 B 451 GLN SER THR PHE ASP GLU ILE GLU GLY ILE LEU ARG THR SEQRES 35 B 451 VAL LEU THR GLU ALA TRP THR LYS LEU MODRES 9QGH LLP A 289 LYS MODIFIED RESIDUE MODRES 9QGH LLP B 289 LYS MODIFIED RESIDUE HET LLP A 289 24 HET LLP B 289 24 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE FORMUL 1 LLP 2(C14 H22 N3 O7 P) FORMUL 3 HOH *601(H2 O) HELIX 1 AA1 LEU A 11 LEU A 19 1 9 HELIX 2 AA2 ARG A 25 GLU A 30 5 6 HELIX 3 AA3 LEU A 57 VAL A 62 1 6 HELIX 4 AA4 ARG A 69 ALA A 84 1 16 HELIX 5 AA5 HIS A 93 ALA A 107 1 15 HELIX 6 AA6 GLY A 119 THR A 138 1 20 HELIX 7 AA7 PRO A 157 THR A 164 1 8 HELIX 8 AA8 LEU A 166 GLU A 174 5 9 HELIX 9 AA9 ASN A 187 ALA A 191 5 5 HELIX 10 AB1 ASP A 197 GLY A 217 1 21 HELIX 11 AB2 GLY A 241 ASP A 254 1 14 HELIX 12 AB3 PHE A 273 GLY A 279 5 7 HELIX 13 AB4 ALA A 288 SER A 293 5 6 HELIX 14 AB5 ASP A 305 TYR A 312 1 8 HELIX 15 AB6 HIS A 327 GLY A 345 1 19 HELIX 16 AB7 GLY A 345 LYS A 363 1 19 HELIX 17 AB8 LEU A 364 LEU A 367 5 4 HELIX 18 AB9 THR A 395 LEU A 403 1 9 HELIX 19 AC1 GLY A 405 ASN A 414 1 10 HELIX 20 AC2 ASP A 437 LYS A 458 1 22 HELIX 21 AC3 LEU B 11 LEU B 19 1 9 HELIX 22 AC4 ARG B 25 GLU B 30 5 6 HELIX 23 AC5 LEU B 57 VAL B 62 1 6 HELIX 24 AC6 ARG B 69 ALA B 84 1 16 HELIX 25 AC7 HIS B 93 ALA B 107 1 15 HELIX 26 AC8 GLY B 119 THR B 138 1 20 HELIX 27 AC9 PRO B 157 THR B 164 1 8 HELIX 28 AD1 LEU B 166 GLU B 174 5 9 HELIX 29 AD2 ASN B 187 ALA B 191 5 5 HELIX 30 AD3 ASP B 197 GLY B 217 1 21 HELIX 31 AD4 GLY B 241 ASP B 254 1 14 HELIX 32 AD5 PHE B 273 GLY B 279 5 7 HELIX 33 AD6 ALA B 288 SER B 293 5 6 HELIX 34 AD7 ASP B 305 GLU B 309 1 5 HELIX 35 AD8 PRO B 310 GLN B 313 5 4 HELIX 36 AD9 HIS B 327 GLY B 345 1 19 HELIX 37 AE1 GLY B 345 LYS B 363 1 19 HELIX 38 AE2 LEU B 364 LEU B 367 5 4 HELIX 39 AE3 THR B 395 LEU B 403 1 9 HELIX 40 AE4 GLY B 405 ASN B 414 1 10 HELIX 41 AE5 ASP B 437 LEU B 459 1 23 SHEET 1 AA1 4 ILE A 37 GLU A 41 0 SHEET 2 AA1 4 TYR A 44 ASP A 47 -1 O PHE A 46 N VAL A 38 SHEET 3 AA1 4 ARG A 52 ASP A 55 -1 O TYR A 53 N ILE A 45 SHEET 4 AA1 4 LEU A 416 TYR A 417 1 O TYR A 417 N LEU A 54 SHEET 1 AA2 7 LEU A 111 THR A 117 0 SHEET 2 AA2 7 GLY A 299 SER A 304 -1 O ILE A 303 N LYS A 113 SHEET 3 AA2 7 MET A 284 CYS A 287 -1 N ILE A 285 O ILE A 302 SHEET 4 AA2 7 LEU A 256 ASP A 260 1 N SER A 259 O MET A 284 SHEET 5 AA2 7 VAL A 221 LEU A 226 1 N VAL A 224 O VAL A 258 SHEET 6 AA2 7 LYS A 145 ARG A 149 1 N ILE A 147 O PHE A 225 SHEET 7 AA2 7 ALA A 180 VAL A 183 1 O HIS A 181 N VAL A 146 SHEET 1 AA3 4 VAL A 370 ASN A 376 0 SHEET 2 AA3 4 PHE A 379 LEU A 384 -1 O GLY A 381 N ARG A 374 SHEET 3 AA3 4 VAL A 427 LEU A 430 -1 O LEU A 430 N TYR A 380 SHEET 4 AA3 4 ARG A 419 ASP A 421 -1 N ARG A 419 O GLN A 429 SHEET 1 AA4 4 ILE B 37 GLU B 41 0 SHEET 2 AA4 4 TYR B 44 ASP B 47 -1 O PHE B 46 N VAL B 38 SHEET 3 AA4 4 ARG B 52 ASP B 55 -1 O TYR B 53 N ILE B 45 SHEET 4 AA4 4 LEU B 416 TYR B 417 1 O TYR B 417 N LEU B 54 SHEET 1 AA5 7 LEU B 111 THR B 117 0 SHEET 2 AA5 7 GLY B 299 SER B 304 -1 O ILE B 303 N LYS B 113 SHEET 3 AA5 7 MET B 284 CYS B 287 -1 N ILE B 285 O ILE B 302 SHEET 4 AA5 7 LEU B 256 ASP B 260 1 N SER B 259 O MET B 284 SHEET 5 AA5 7 VAL B 221 LEU B 226 1 N VAL B 224 O VAL B 258 SHEET 6 AA5 7 LYS B 145 ARG B 149 1 N ILE B 147 O PHE B 225 SHEET 7 AA5 7 ALA B 180 VAL B 183 1 O HIS B 181 N VAL B 146 SHEET 1 AA6 4 VAL B 370 ASN B 376 0 SHEET 2 AA6 4 PHE B 379 LEU B 384 -1 O GLU B 383 N GLY B 371 SHEET 3 AA6 4 VAL B 427 LEU B 430 -1 O LEU B 430 N TYR B 380 SHEET 4 AA6 4 ARG B 419 ASP B 421 -1 N ARG B 419 O GLN B 429 LINK C ALA A 288 N LLP A 289 1555 1555 1.36 LINK C LLP A 289 N GLY A 290 1555 1555 1.33 LINK C ALA B 288 N LLP B 289 1555 1555 1.35 LINK C LLP B 289 N GLY B 290 1555 1555 1.36 CISPEP 1 GLU A 174 PRO A 175 0 4.97 CISPEP 2 GLU B 174 PRO B 175 0 5.17 CRYST1 99.747 176.464 111.259 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010025 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005667 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008988 0.00000 CONECT 2168 2186 CONECT 2171 2172 2179 CONECT 2172 2171 2173 2174 CONECT 2173 2172 CONECT 2174 2172 2175 2176 CONECT 2175 2174 CONECT 2176 2174 2177 2178 CONECT 2177 2176 2192 CONECT 2178 2176 2179 2180 CONECT 2179 2171 2178 CONECT 2180 2178 2181 CONECT 2181 2180 2182 CONECT 2182 2181 2183 2184 2185 CONECT 2183 2182 CONECT 2184 2182 CONECT 2185 2182 CONECT 2186 2168 2187 CONECT 2187 2186 2188 2193 CONECT 2188 2187 2189 CONECT 2189 2188 2190 CONECT 2190 2189 2191 CONECT 2191 2190 2192 CONECT 2192 2177 2191 CONECT 2193 2187 2194 2195 CONECT 2194 2193 CONECT 2195 2193 CONECT 5691 5709 CONECT 5694 5695 5702 CONECT 5695 5694 5696 5697 CONECT 5696 5695 CONECT 5697 5695 5698 5699 CONECT 5698 5697 CONECT 5699 5697 5700 5701 CONECT 5700 5699 5715 CONECT 5701 5699 5702 5703 CONECT 5702 5694 5701 CONECT 5703 5701 5704 CONECT 5704 5703 5705 CONECT 5705 5704 5706 5707 5708 CONECT 5706 5705 CONECT 5707 5705 CONECT 5708 5705 CONECT 5709 5691 5710 CONECT 5710 5709 5711 5716 CONECT 5711 5710 5712 CONECT 5712 5711 5713 CONECT 5713 5712 5714 CONECT 5714 5713 5715 CONECT 5715 5700 5714 CONECT 5716 5710 5717 5718 CONECT 5717 5716 CONECT 5718 5716 MASTER 415 0 2 41 30 0 0 6 7645 2 52 70 END