HEADER OXIDOREDUCTASE 19-MAR-25 9QJI TITLE STRUCTURE OF RHYZOPERTHA DOMINICA DIHYDROLIPOYL DEHYDROGENASE VARIANT TITLE 2 H485E/E490Q AT 1.55 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROLIPOYL DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.8.1.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHYZOPERTHA DOMINICA; SOURCE 3 ORGANISM_COMMON: LESSER GRAIN BORER; SOURCE 4 ORGANISM_TAXID: 92692; SOURCE 5 GENE: DLD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS OXIDOREDUCTASE, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.RABE VON PAPPENHEIM,K.TITTMANN REVDAT 1 30-SEP-26 9QJI 0 JRNL AUTH F.RABE VON PAPPENHEIM,K.TITTMANN JRNL TITL STRUCTURE OF RHYZOPERTHA DOMINICA DIHYDROLIPOYL JRNL TITL 2 DEHYDROGENASE VARIANT H485E/E490Q AT 1.55 ANGSTROM JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 119394 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 6028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 71.6500 - 4.8200 0.99 4301 244 0.1706 0.1701 REMARK 3 2 4.8200 - 3.8300 0.89 3733 202 0.1220 0.1417 REMARK 3 3 3.8300 - 3.3400 0.75 3076 171 0.1441 0.1562 REMARK 3 4 3.3400 - 3.0400 1.00 4139 217 0.1477 0.1622 REMARK 3 5 3.0400 - 2.8200 1.00 4110 230 0.1585 0.1962 REMARK 3 6 2.8200 - 2.6800 0.99 3214 172 0.1588 0.2075 REMARK 3 7 2.6500 - 2.5200 0.98 3904 239 0.1551 0.1850 REMARK 3 8 2.5200 - 2.4100 1.00 4074 214 0.1427 0.1911 REMARK 3 9 2.4100 - 2.3200 0.99 4031 202 0.1372 0.1742 REMARK 3 10 2.3200 - 2.2700 0.99 2626 155 0.1501 0.2017 REMARK 3 11 2.2300 - 2.1700 0.98 3639 162 0.1521 0.1953 REMARK 3 12 2.1700 - 2.1100 1.00 4043 214 0.1522 0.1855 REMARK 3 13 2.1100 - 2.0500 0.57 2337 107 0.1742 0.2212 REMARK 3 14 2.0500 - 2.0000 1.00 4042 204 0.1729 0.1905 REMARK 3 15 2.0000 - 1.9600 0.96 3908 208 0.2070 0.2168 REMARK 3 16 1.9600 - 1.9100 0.67 2708 143 0.3255 0.3034 REMARK 3 17 1.9100 - 1.8800 0.83 3366 161 0.3057 0.3777 REMARK 3 18 1.8800 - 1.8400 0.97 3916 199 0.2064 0.2651 REMARK 3 19 1.8400 - 1.8100 1.00 4033 217 0.1618 0.1943 REMARK 3 20 1.8100 - 1.7800 1.00 4020 217 0.1540 0.1929 REMARK 3 21 1.7800 - 1.7500 1.00 4062 196 0.1601 0.1853 REMARK 3 22 1.7500 - 1.7200 0.99 3964 224 0.1916 0.2418 REMARK 3 23 1.7200 - 1.7000 0.99 3980 225 0.2010 0.2522 REMARK 3 24 1.7000 - 1.6700 1.00 4014 208 0.1649 0.2293 REMARK 3 25 1.6700 - 1.6500 1.00 4024 223 0.1659 0.1750 REMARK 3 26 1.6500 - 1.6300 1.00 4024 211 0.1720 0.2205 REMARK 3 27 1.6300 - 1.6100 1.00 4020 207 0.1816 0.2136 REMARK 3 28 1.6100 - 1.5900 1.00 4026 225 0.1883 0.2442 REMARK 3 29 1.5900 - 1.5700 1.00 3994 218 0.1969 0.2352 REMARK 3 30 1.5700 - 1.5500 1.00 4038 213 0.2046 0.2208 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.60 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 7340 REMARK 3 ANGLE : 0.787 9977 REMARK 3 CHIRALITY : 0.068 1158 REMARK 3 PLANARITY : 0.004 1286 REMARK 3 DIHEDRAL : 13.636 2691 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 8.8008 -7.7605 -54.9924 REMARK 3 T TENSOR REMARK 3 T11: 0.1617 T22: 0.1722 REMARK 3 T33: 0.2060 T12: 0.0070 REMARK 3 T13: 0.0093 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.1328 L22: 0.1942 REMARK 3 L33: 0.7194 L12: -0.0199 REMARK 3 L13: 0.0948 L23: -0.1409 REMARK 3 S TENSOR REMARK 3 S11: -0.0094 S12: -0.0127 S13: 0.0034 REMARK 3 S21: 0.0375 S22: 0.0406 S23: 0.0351 REMARK 3 S31: -0.0434 S32: -0.0965 S33: 0.0003 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9QJI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1292141910. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-FEB-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X CDTE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 120731 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 77.627 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, MAGNESIUM CHLORIDE, PEG3350, REMARK 280 FORMAMIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.45100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.65400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.17400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.65400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.45100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.17400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 35 REMARK 465 SER B 35 REMARK 465 THR B 36 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 367 HH TYR A 384 1.59 REMARK 500 OD1 ASP A 446 O HOH A 701 1.93 REMARK 500 O HOH A 1088 O HOH A 1229 1.94 REMARK 500 O HOH A 1101 O HOH A 1167 1.97 REMARK 500 O HOH B 790 O HOH B 1165 1.98 REMARK 500 O HOH B 1211 O HOH B 1267 1.99 REMARK 500 O HOH A 1311 O HOH A 1351 1.99 REMARK 500 O HOH B 1025 O HOH B 1082 1.99 REMARK 500 O HOH B 796 O HOH B 1078 2.01 REMARK 500 O HOH A 949 O HOH A 1185 2.03 REMARK 500 O HOH A 763 O HOH A 839 2.04 REMARK 500 O HOH B 860 O HOH B 1035 2.04 REMARK 500 O HOH A 1253 O HOH A 1302 2.04 REMARK 500 O HOH A 1147 O HOH A 1151 2.04 REMARK 500 O HOH A 1009 O HOH A 1111 2.05 REMARK 500 O HOH A 708 O HOH A 1089 2.06 REMARK 500 O HOH B 983 O HOH B 1157 2.07 REMARK 500 O HOH A 1213 O HOH A 1228 2.07 REMARK 500 O HOH A 751 O HOH A 1191 2.07 REMARK 500 O HOH A 1145 O HOH A 1291 2.07 REMARK 500 O HOH A 1168 O HOH A 1170 2.09 REMARK 500 O HOH B 1202 O HOH B 1265 2.09 REMARK 500 O HOH A 959 O HOH A 1194 2.09 REMARK 500 O HOH B 967 O HOH B 1242 2.11 REMARK 500 O HOH B 1179 O HOH B 1240 2.12 REMARK 500 O HOH A 805 O HOH A 1130 2.12 REMARK 500 O HOH B 1153 O HOH B 1257 2.12 REMARK 500 O HOH A 1141 O HOH A 1267 2.12 REMARK 500 O HOH A 731 O HOH A 1183 2.12 REMARK 500 OE1 GLU A 196 O HOH A 702 2.13 REMARK 500 O HOH A 1326 O HOH A 1341 2.14 REMARK 500 O HOH A 1237 O HOH A 1340 2.14 REMARK 500 NZ LYS A 265 O HOH A 703 2.15 REMARK 500 O HOH A 1034 O HOH A 1250 2.15 REMARK 500 O HOH A 711 O HOH A 903 2.15 REMARK 500 O HOH B 1006 O HOH B 1241 2.15 REMARK 500 O HOH A 754 O HOH A 1068 2.15 REMARK 500 O HOH A 839 O HOH A 1096 2.15 REMARK 500 O HOH B 1224 O HOH B 1278 2.16 REMARK 500 O HOH A 806 O HOH A 1105 2.18 REMARK 500 O HOH A 1206 O HOH A 1219 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HZ1 LYS A 141 OE2 GLU A 410 3554 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 83 CA - CB - SG ANGL. DEV. = 6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 219 36.62 -98.58 REMARK 500 THR A 317 30.55 -143.92 REMARK 500 TYR A 392 30.08 -99.89 REMARK 500 THR A 393 -179.14 -62.21 REMARK 500 ALA B 285 -152.47 -146.83 REMARK 500 PRO B 296 -9.03 -59.33 REMARK 500 CYS B 310 50.33 -146.89 REMARK 500 THR B 317 30.37 -142.51 REMARK 500 ASP B 432 87.55 -155.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1354 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A1355 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A1356 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A1357 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A1358 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A1359 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH A1360 DISTANCE = 7.03 ANGSTROMS REMARK 525 HOH A1361 DISTANCE = 7.45 ANGSTROMS REMARK 525 HOH B1286 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B1287 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH B1288 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH B1289 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH B1290 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH B1291 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH B1292 DISTANCE = 7.03 ANGSTROMS DBREF 9QJI A 35 507 UNP K7PQ54 K7PQ54_RHYDO 35 507 DBREF 9QJI B 35 507 UNP K7PQ54 K7PQ54_RHYDO 35 507 SEQADV 9QJI GLU A 485 UNP K7PQ54 HIS 485 ENGINEERED MUTATION SEQADV 9QJI GLN A 490 UNP K7PQ54 GLU 490 ENGINEERED MUTATION SEQADV 9QJI GLU B 485 UNP K7PQ54 HIS 485 ENGINEERED MUTATION SEQADV 9QJI GLN B 490 UNP K7PQ54 GLU 490 ENGINEERED MUTATION SEQRES 1 A 473 SER THR THR HIS GLU ALA ASP ILE VAL VAL ILE GLY SER SEQRES 2 A 473 GLY PRO GLY GLY TYR VAL ALA ALA ILE LYS ALA THR GLN SEQRES 3 A 473 LEU GLY PHE LYS THR VAL CYS ILE GLU LYS ASN PRO THR SEQRES 4 A 473 LEU GLY GLY THR CYS LEU ASN VAL GLY CYS ILE PRO SER SEQRES 5 A 473 LYS ALA LEU LEU ASN ASN SER HIS TYR TYR HIS MET ALA SEQRES 6 A 473 HIS SER GLY GLU LEU ALA GLU ARG GLY VAL THR VAL SER SEQRES 7 A 473 ASN VAL GLU LEU ASN LEU ASP LYS LEU MET GLN THR LYS SEQRES 8 A 473 SER ASN ALA VAL LYS ALA LEU THR GLY GLY ILE ALA MET SEQRES 9 A 473 LEU PHE LYS LYS ASN LYS VAL HIS LEU ILE ASN GLY HIS SEQRES 10 A 473 GLY LYS ILE THR GLY ASN ASN GLN VAL THR ALA LEU LYS SEQRES 11 A 473 PRO ASP GLY SER SER GLU VAL VAL ASN THR LYS ASN ILE SEQRES 12 A 473 LEU ILE ALA THR GLY SER GLU VAL THR PRO PHE GLN GLY SEQRES 13 A 473 ILE PRO ILE ASP GLU GLU THR ILE VAL SER SER THR GLY SEQRES 14 A 473 ALA LEU SER LEU LYS GLN VAL PRO LYS ARG LEU VAL VAL SEQRES 15 A 473 ILE GLY ALA GLY VAL ILE GLY LEU GLU LEU GLY SER VAL SEQRES 16 A 473 TRP SER ARG LEU GLY ALA ASP VAL THR ALA VAL GLU PHE SEQRES 17 A 473 LEU ASN SER ILE GLY GLY ALA GLY ILE ASP GLY GLU VAL SEQRES 18 A 473 ALA GLN THR PHE GLN LYS VAL LEU THR LYS GLN GLY LEU SEQRES 19 A 473 LYS PHE LYS LEU GLY THR LYS VAL THR SER ALA GLN LYS SEQRES 20 A 473 THR GLY GLY ALA ILE LYS VAL SER VAL GLU ASP VAL LYS SEQRES 21 A 473 ASN PRO GLU LYS LYS GLU ASP LEU GLU CYS ASP VAL LEU SEQRES 22 A 473 LEU VAL CYS VAL GLY ARG ARG PRO TYR THR GLU ASN LEU SEQRES 23 A 473 GLY LEU GLU GLU MET GLY ILE GLU ARG ASP GLN ARG GLY SEQRES 24 A 473 CYS ILE PRO VAL ASN SER HIS PHE GLN THR VAL ILE PRO SEQRES 25 A 473 ASN ILE TYR ALA ILE GLY ASP CYS ILE HIS GLY PRO MET SEQRES 26 A 473 LEU ALA HIS LYS ALA GLU ASP GLU GLY ILE ILE CYS VAL SEQRES 27 A 473 GLU GLY ILE LYS GLY GLY PRO VAL HIS ILE ASP TYR ASN SEQRES 28 A 473 CYS VAL PRO SER VAL ILE TYR THR HIS PRO GLU VAL GLY SEQRES 29 A 473 TRP VAL GLY LYS THR GLU GLU ASP LEU LYS SER GLU GLY SEQRES 30 A 473 VAL ASN TYR LYS VAL GLY LYS PHE PRO PHE LEU ALA ASN SEQRES 31 A 473 SER ARG ALA LYS THR ASN ASN ASP THR ASP GLY PHE VAL SEQRES 32 A 473 LYS VAL LEU SER ASP LYS ASN THR ASP ARG ILE LEU GLY SEQRES 33 A 473 THR HIS ILE ILE GLY PRO MET ALA GLY GLU LEU ILE ASN SEQRES 34 A 473 GLU ALA VAL LEU ALA GLN GLU TYR GLY ALA SER SER GLU SEQRES 35 A 473 ASP VAL ALA ARG VAL CYS HIS ALA GLU PRO THR CYS SER SEQRES 36 A 473 GLN ALA LEU ARG GLU ALA ASN LEU ALA ALA TYR PHE GLY SEQRES 37 A 473 LYS PRO ILE ASN PHE SEQRES 1 B 473 SER THR THR HIS GLU ALA ASP ILE VAL VAL ILE GLY SER SEQRES 2 B 473 GLY PRO GLY GLY TYR VAL ALA ALA ILE LYS ALA THR GLN SEQRES 3 B 473 LEU GLY PHE LYS THR VAL CYS ILE GLU LYS ASN PRO THR SEQRES 4 B 473 LEU GLY GLY THR CYS LEU ASN VAL GLY CYS ILE PRO SER SEQRES 5 B 473 LYS ALA LEU LEU ASN ASN SER HIS TYR TYR HIS MET ALA SEQRES 6 B 473 HIS SER GLY GLU LEU ALA GLU ARG GLY VAL THR VAL SER SEQRES 7 B 473 ASN VAL GLU LEU ASN LEU ASP LYS LEU MET GLN THR LYS SEQRES 8 B 473 SER ASN ALA VAL LYS ALA LEU THR GLY GLY ILE ALA MET SEQRES 9 B 473 LEU PHE LYS LYS ASN LYS VAL HIS LEU ILE ASN GLY HIS SEQRES 10 B 473 GLY LYS ILE THR GLY ASN ASN GLN VAL THR ALA LEU LYS SEQRES 11 B 473 PRO ASP GLY SER SER GLU VAL VAL ASN THR LYS ASN ILE SEQRES 12 B 473 LEU ILE ALA THR GLY SER GLU VAL THR PRO PHE GLN GLY SEQRES 13 B 473 ILE PRO ILE ASP GLU GLU THR ILE VAL SER SER THR GLY SEQRES 14 B 473 ALA LEU SER LEU LYS GLN VAL PRO LYS ARG LEU VAL VAL SEQRES 15 B 473 ILE GLY ALA GLY VAL ILE GLY LEU GLU LEU GLY SER VAL SEQRES 16 B 473 TRP SER ARG LEU GLY ALA ASP VAL THR ALA VAL GLU PHE SEQRES 17 B 473 LEU ASN SER ILE GLY GLY ALA GLY ILE ASP GLY GLU VAL SEQRES 18 B 473 ALA GLN THR PHE GLN LYS VAL LEU THR LYS GLN GLY LEU SEQRES 19 B 473 LYS PHE LYS LEU GLY THR LYS VAL THR SER ALA GLN LYS SEQRES 20 B 473 THR GLY GLY ALA ILE LYS VAL SER VAL GLU ASP VAL LYS SEQRES 21 B 473 ASN PRO GLU LYS LYS GLU ASP LEU GLU CYS ASP VAL LEU SEQRES 22 B 473 LEU VAL CYS VAL GLY ARG ARG PRO TYR THR GLU ASN LEU SEQRES 23 B 473 GLY LEU GLU GLU MET GLY ILE GLU ARG ASP GLN ARG GLY SEQRES 24 B 473 CYS ILE PRO VAL ASN SER HIS PHE GLN THR VAL ILE PRO SEQRES 25 B 473 ASN ILE TYR ALA ILE GLY ASP CYS ILE HIS GLY PRO MET SEQRES 26 B 473 LEU ALA HIS LYS ALA GLU ASP GLU GLY ILE ILE CYS VAL SEQRES 27 B 473 GLU GLY ILE LYS GLY GLY PRO VAL HIS ILE ASP TYR ASN SEQRES 28 B 473 CYS VAL PRO SER VAL ILE TYR THR HIS PRO GLU VAL GLY SEQRES 29 B 473 TRP VAL GLY LYS THR GLU GLU ASP LEU LYS SER GLU GLY SEQRES 30 B 473 VAL ASN TYR LYS VAL GLY LYS PHE PRO PHE LEU ALA ASN SEQRES 31 B 473 SER ARG ALA LYS THR ASN ASN ASP THR ASP GLY PHE VAL SEQRES 32 B 473 LYS VAL LEU SER ASP LYS ASN THR ASP ARG ILE LEU GLY SEQRES 33 B 473 THR HIS ILE ILE GLY PRO MET ALA GLY GLU LEU ILE ASN SEQRES 34 B 473 GLU ALA VAL LEU ALA GLN GLU TYR GLY ALA SER SER GLU SEQRES 35 B 473 ASP VAL ALA ARG VAL CYS HIS ALA GLU PRO THR CYS SER SEQRES 36 B 473 GLN ALA LEU ARG GLU ALA ASN LEU ALA ALA TYR PHE GLY SEQRES 37 B 473 LYS PRO ILE ASN PHE HET FAD A 601 53 HET FAD B 601 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 HOH *1253(H2 O) HELIX 1 AA1 GLY A 48 LEU A 61 1 14 HELIX 2 AA2 GLY A 75 GLY A 82 1 8 HELIX 3 AA3 GLY A 82 SER A 101 1 20 HELIX 4 AA4 GLY A 102 ARG A 107 1 6 HELIX 5 AA5 ASN A 117 ASN A 143 1 27 HELIX 6 AA6 SER A 200 LEU A 205 1 6 HELIX 7 AA7 GLY A 220 LEU A 233 1 14 HELIX 8 AA8 ASP A 252 GLN A 266 1 15 HELIX 9 AA9 GLY A 321 GLY A 326 1 6 HELIX 10 AB1 GLY A 352 ILE A 355 5 4 HELIX 11 AB2 LEU A 360 GLY A 377 1 18 HELIX 12 AB3 ASP A 383 VAL A 387 5 5 HELIX 13 AB4 THR A 403 GLY A 411 1 9 HELIX 14 AB5 ASN A 424 ASN A 430 1 7 HELIX 15 AB6 MET A 457 TYR A 471 1 15 HELIX 16 AB7 SER A 474 ARG A 480 1 7 HELIX 17 AB8 CYS A 488 GLY A 502 1 15 HELIX 18 AB9 GLY B 48 LEU B 61 1 14 HELIX 19 AC1 GLY B 75 GLY B 82 1 8 HELIX 20 AC2 GLY B 82 SER B 101 1 20 HELIX 21 AC3 GLY B 102 ARG B 107 1 6 HELIX 22 AC4 ASN B 117 LYS B 144 1 28 HELIX 23 AC5 SER B 200 LEU B 205 1 6 HELIX 24 AC6 GLY B 220 LEU B 233 1 14 HELIX 25 AC7 ASP B 252 GLN B 266 1 15 HELIX 26 AC8 GLY B 321 GLY B 326 1 6 HELIX 27 AC9 GLY B 352 ILE B 355 5 4 HELIX 28 AD1 LEU B 360 GLY B 377 1 18 HELIX 29 AD2 ASP B 383 VAL B 387 5 5 HELIX 30 AD3 THR B 403 GLY B 411 1 9 HELIX 31 AD4 ASN B 424 ASN B 430 1 7 HELIX 32 AD5 MET B 457 TYR B 471 1 15 HELIX 33 AD6 SER B 474 ARG B 480 1 7 HELIX 34 AD7 CYS B 488 GLY B 502 1 15 SHEET 1 AA1 6 HIS A 146 ASN A 149 0 SHEET 2 AA1 6 THR A 65 GLU A 69 1 N CYS A 67 O HIS A 146 SHEET 3 AA1 6 THR A 37 ILE A 45 1 N VAL A 44 O VAL A 66 SHEET 4 AA1 6 SER A 169 ILE A 179 1 O LEU A 178 N VAL A 43 SHEET 5 AA1 6 GLN A 159 LEU A 163 -1 N ALA A 162 O GLU A 170 SHEET 6 AA1 6 HIS A 151 GLY A 156 -1 N LYS A 153 O THR A 161 SHEET 1 AA2 5 HIS A 146 ASN A 149 0 SHEET 2 AA2 5 THR A 65 GLU A 69 1 N CYS A 67 O HIS A 146 SHEET 3 AA2 5 THR A 37 ILE A 45 1 N VAL A 44 O VAL A 66 SHEET 4 AA2 5 SER A 169 ILE A 179 1 O LEU A 178 N VAL A 43 SHEET 5 AA2 5 ILE A 348 ALA A 350 1 O TYR A 349 N ILE A 177 SHEET 1 AA3 2 VAL A 109 SER A 112 0 SHEET 2 AA3 2 ASN B 113 LEU B 116 -1 O GLU B 115 N THR A 110 SHEET 1 AA4 2 GLU A 115 LEU A 116 0 SHEET 2 AA4 2 VAL B 109 THR B 110 -1 O THR B 110 N GLU A 115 SHEET 1 AA5 2 SER A 183 VAL A 185 0 SHEET 2 AA5 2 ARG A 313 PRO A 315 -1 O ARG A 314 N GLU A 184 SHEET 1 AA6 5 ILE A 198 VAL A 199 0 SHEET 2 AA6 5 VAL A 306 VAL A 309 1 O VAL A 309 N VAL A 199 SHEET 3 AA6 5 ARG A 213 ILE A 217 1 N ILE A 217 O LEU A 308 SHEET 4 AA6 5 ASP A 236 VAL A 240 1 O VAL A 240 N VAL A 216 SHEET 5 AA6 5 LYS A 269 LYS A 271 1 O LYS A 269 N ALA A 239 SHEET 1 AA7 3 THR A 274 THR A 282 0 SHEET 2 AA7 3 ALA A 285 ASP A 292 -1 O LYS A 287 N GLN A 280 SHEET 3 AA7 3 LYS A 299 CYS A 304 -1 O LEU A 302 N VAL A 288 SHEET 1 AA8 5 SER A 389 ILE A 391 0 SHEET 2 AA8 5 GLU A 396 GLY A 401 -1 O VAL A 397 N ILE A 391 SHEET 3 AA8 5 ILE A 448 GLY A 455 -1 O ILE A 453 N GLY A 398 SHEET 4 AA8 5 PHE A 436 ASP A 442 -1 N LEU A 440 O LEU A 449 SHEET 5 AA8 5 TYR A 414 PRO A 420 -1 N LYS A 415 O SER A 441 SHEET 1 AA9 6 HIS B 146 ASN B 149 0 SHEET 2 AA9 6 THR B 65 GLU B 69 1 N CYS B 67 O HIS B 146 SHEET 3 AA9 6 HIS B 38 ILE B 45 1 N VAL B 44 O VAL B 66 SHEET 4 AA9 6 SER B 169 ILE B 179 1 O LEU B 178 N VAL B 43 SHEET 5 AA9 6 GLN B 159 LEU B 163 -1 N ALA B 162 O GLU B 170 SHEET 6 AA9 6 HIS B 151 GLY B 156 -1 N LYS B 153 O THR B 161 SHEET 1 AB1 5 HIS B 146 ASN B 149 0 SHEET 2 AB1 5 THR B 65 GLU B 69 1 N CYS B 67 O HIS B 146 SHEET 3 AB1 5 HIS B 38 ILE B 45 1 N VAL B 44 O VAL B 66 SHEET 4 AB1 5 SER B 169 ILE B 179 1 O LEU B 178 N VAL B 43 SHEET 5 AB1 5 ILE B 348 ALA B 350 1 O TYR B 349 N ILE B 177 SHEET 1 AB2 2 SER B 183 VAL B 185 0 SHEET 2 AB2 2 ARG B 313 PRO B 315 -1 O ARG B 314 N GLU B 184 SHEET 1 AB3 5 ILE B 198 VAL B 199 0 SHEET 2 AB3 5 VAL B 306 VAL B 309 1 O VAL B 309 N VAL B 199 SHEET 3 AB3 5 ARG B 213 ILE B 217 1 N ILE B 217 O LEU B 308 SHEET 4 AB3 5 ASP B 236 VAL B 240 1 O VAL B 240 N VAL B 216 SHEET 5 AB3 5 LYS B 269 LYS B 271 1 O LYS B 269 N ALA B 239 SHEET 1 AB4 3 THR B 274 THR B 282 0 SHEET 2 AB4 3 ALA B 285 ASP B 292 -1 O GLU B 291 N LYS B 275 SHEET 3 AB4 3 LYS B 299 CYS B 304 -1 O LEU B 302 N VAL B 288 SHEET 1 AB5 5 SER B 389 ILE B 391 0 SHEET 2 AB5 5 GLU B 396 GLY B 401 -1 O VAL B 397 N ILE B 391 SHEET 3 AB5 5 ILE B 448 GLY B 455 -1 O ILE B 453 N GLY B 398 SHEET 4 AB5 5 PHE B 436 ASP B 442 -1 N LEU B 440 O LEU B 449 SHEET 5 AB5 5 TYR B 414 PRO B 420 -1 N GLY B 417 O VAL B 439 SSBOND 1 CYS A 78 CYS A 83 1555 1555 2.04 SSBOND 2 CYS B 78 CYS B 83 1555 1555 2.04 CISPEP 1 HIS A 394 PRO A 395 0 2.88 CISPEP 2 GLU A 485 PRO A 486 0 -7.15 CISPEP 3 HIS B 394 PRO B 395 0 4.47 CISPEP 4 GLU B 485 PRO B 486 0 -11.49 CRYST1 66.902 92.348 143.308 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014947 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010829 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006978 0.00000 CONECT 602 668 CONECT 668 602 CONECT 7728 7794 CONECT 7794 7728 CONECT1426014261142621426314312 CONECT1426114260 CONECT1426214260 CONECT142631426014264 CONECT142641426314265 CONECT14265142641426614267 CONECT142661426514271 CONECT14267142651426814269 CONECT1426814267 CONECT14269142671427014271 CONECT1427014269 CONECT14271142661426914272 CONECT14272142711427314281 CONECT142731427214274 CONECT142741427314275 CONECT14275142741427614281 CONECT14276142751427714278 CONECT1427714276 CONECT142781427614279 CONECT142791427814280 CONECT142801427914281 CONECT14281142721427514280 CONECT142821428314299 CONECT14283142821428414285 CONECT1428414283 CONECT142851428314286 CONECT14286142851428714288 CONECT1428714286 CONECT14288142861428914299 CONECT142891428814290 CONECT14290142891429114297 CONECT142911429014292 CONECT14292142911429314294 CONECT1429314292 CONECT14294142921429514296 CONECT1429514294 CONECT142961429414297 CONECT14297142901429614298 CONECT14298142971429914300 CONECT14299142821428814298 CONECT143001429814301 CONECT14301143001430214303 CONECT1430214301 CONECT14303143011430414305 CONECT1430414303 CONECT14305143031430614307 CONECT1430614305 CONECT143071430514308 CONECT143081430714309 CONECT1430914308143101431114312 CONECT1431014309 CONECT1431114309 CONECT143121426014309 CONECT1431314314143151431614365 CONECT1431414313 CONECT1431514313 CONECT143161431314317 CONECT143171431614318 CONECT14318143171431914320 CONECT143191431814324 CONECT14320143181432114322 CONECT1432114320 CONECT14322143201432314324 CONECT1432314322 CONECT14324143191432214325 CONECT14325143241432614334 CONECT143261432514327 CONECT143271432614328 CONECT14328143271432914334 CONECT14329143281433014331 CONECT1433014329 CONECT143311432914332 CONECT143321433114333 CONECT143331433214334 CONECT14334143251432814333 CONECT143351433614352 CONECT14336143351433714338 CONECT1433714336 CONECT143381433614339 CONECT14339143381434014341 CONECT1434014339 CONECT14341143391434214352 CONECT143421434114343 CONECT14343143421434414350 CONECT143441434314345 CONECT14345143441434614347 CONECT1434614345 CONECT14347143451434814349 CONECT1434814347 CONECT143491434714350 CONECT14350143431434914351 CONECT14351143501435214353 CONECT14352143351434114351 CONECT143531435114354 CONECT14354143531435514356 CONECT1435514354 CONECT14356143541435714358 CONECT1435714356 CONECT14358143561435914360 CONECT1435914358 CONECT143601435814361 CONECT143611436014362 CONECT1436214361143631436414365 CONECT1436314362 CONECT1436414362 CONECT143651431314362 MASTER 387 0 2 34 56 0 0 6 8400 2 110 74 END