HEADER SPLICING 20-MAR-25 9QKT TITLE CRYO-EM STRUCTURE OF THE CDK11B-CYCLIN L2-SAP30BP BOUND TO OTS964 TITLE 2 (CONFORMATION 1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SAP30-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRANSCRIPTIONAL REGULATOR PROTEIN HCNGP; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CYCLIN-L2; COMPND 8 CHAIN: C; COMPND 9 SYNONYM: PANETH CELL-ENHANCED EXPRESSION PROTEIN; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: CYCLIN-DEPENDENT KINASE 11B; COMPND 13 CHAIN: B; COMPND 14 SYNONYM: CELL DIVISION CYCLE 2-LIKE PROTEIN KINASE 1,CLK-1,CELL COMPND 15 DIVISION PROTEIN KINASE 11B,GALACTOSYLTRANSFERASE-ASSOCIATED PROTEIN COMPND 16 KINASE P58/GTA,PITSLRE SERINE/THREONINE-PROTEIN KINASE CDC2L1,P58 COMPND 17 CLK-1; COMPND 18 EC: 2.7.11.22; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SAP30BP, HCNGP, HTRG, HTRP; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HI5; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: CCNL2, SB138; SOURCE 14 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HI5; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_COMMON: HUMAN; SOURCE 20 ORGANISM_TAXID: 9606; SOURCE 21 GENE: CDK11B, CDC2L1, CDK11, PITSLREA, PK58; SOURCE 22 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 24 EXPRESSION_SYSTEM_CELL_LINE: HI5 KEYWDS KINASE, CYCLIN-DEPENDENT KINASE, INHIBITOR, TRANSCRIPTION, MOLECULAR KEYWDS 2 COMPLEX, SPLICING EXPDTA ELECTRON MICROSCOPY AUTHOR A.J.S.MCGEOCH,V.I.CUSHING,N.B.CRONIN,C.ALFIERI,B.J.GREBER REVDAT 1 18-MAR-26 9QKT 0 JRNL AUTH A.J.S.MCGEOCH,V.I.CUSHING,T.I.ROUMELIOTIS,N.B.CRONIN, JRNL AUTH 2 C.ALFIERI,B.J.GREBER,J.CHOUDHARY JRNL TITL CRYO-EM STRUCTURES OF THE CDK11-CYCLIN L-SAP30BP COMPLEX JRNL TITL 2 REVEAL MECHANISMS OF CDK11 REGULATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, EPU, CRYOSPARC, RELION, UCSF REMARK 3 CHIMERAX, RELION, RELION, RELION, REMARK 3 RELION, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.400 REMARK 3 NUMBER OF PARTICLES : 286108 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9QKT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1292146530. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CDK11B-CYCLIN L2-SAP30BP-OTS964 REMARK 245 COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.50 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.90 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 13829 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1800.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 7000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 165000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 LYS A 4 REMARK 465 LYS A 5 REMARK 465 ASN A 6 REMARK 465 VAL A 7 REMARK 465 LEU A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 LEU A 11 REMARK 465 ALA A 12 REMARK 465 VAL A 13 REMARK 465 TYR A 14 REMARK 465 ALA A 15 REMARK 465 GLU A 16 REMARK 465 ASP A 17 REMARK 465 SER A 18 REMARK 465 GLU A 19 REMARK 465 PRO A 20 REMARK 465 GLU A 21 REMARK 465 SER A 22 REMARK 465 ASP A 23 REMARK 465 GLY A 24 REMARK 465 GLU A 25 REMARK 465 ALA A 26 REMARK 465 GLY A 27 REMARK 465 ILE A 28 REMARK 465 GLU A 29 REMARK 465 ALA A 30 REMARK 465 VAL A 31 REMARK 465 GLY A 32 REMARK 465 SER A 33 REMARK 465 ALA A 34 REMARK 465 ALA A 35 REMARK 465 GLU A 36 REMARK 465 GLU A 37 REMARK 465 LYS A 38 REMARK 465 GLY A 39 REMARK 465 GLY A 40 REMARK 465 LEU A 41 REMARK 465 VAL A 42 REMARK 465 SER A 43 REMARK 465 ASP A 44 REMARK 465 ALA A 45 REMARK 465 TYR A 46 REMARK 465 GLY A 47 REMARK 465 GLU A 48 REMARK 465 ASP A 49 REMARK 465 ASP A 50 REMARK 465 PHE A 51 REMARK 465 SER A 52 REMARK 465 ARG A 53 REMARK 465 LEU A 54 REMARK 465 GLY A 55 REMARK 465 GLY A 56 REMARK 465 ASP A 57 REMARK 465 GLU A 58 REMARK 465 ASP A 59 REMARK 465 GLY A 60 REMARK 465 TYR A 61 REMARK 465 GLU A 62 REMARK 465 GLU A 63 REMARK 465 GLU A 64 REMARK 465 GLU A 65 REMARK 465 ASP A 66 REMARK 465 GLU A 67 REMARK 465 ASN A 68 REMARK 465 SER A 69 REMARK 465 ARG A 70 REMARK 465 GLN A 71 REMARK 465 SER A 72 REMARK 465 GLU A 73 REMARK 465 ASP A 74 REMARK 465 ASP A 75 REMARK 465 ASP A 76 REMARK 465 SER A 77 REMARK 465 GLU A 78 REMARK 465 THR A 79 REMARK 465 GLU A 80 REMARK 465 LYS A 81 REMARK 465 PRO A 82 REMARK 465 GLU A 83 REMARK 465 ALA A 84 REMARK 465 ASP A 85 REMARK 465 ASP A 86 REMARK 465 PRO A 87 REMARK 465 LYS A 88 REMARK 465 ASP A 89 REMARK 465 ASN A 90 REMARK 465 THR A 91 REMARK 465 GLU A 92 REMARK 465 ALA A 93 REMARK 465 GLU A 94 REMARK 465 LYS A 95 REMARK 465 ARG A 96 REMARK 465 ASP A 97 REMARK 465 LYS A 216 REMARK 465 GLU A 217 REMARK 465 ARG A 218 REMARK 465 THR A 219 REMARK 465 LYS A 220 REMARK 465 ILE A 221 REMARK 465 GLU A 222 REMARK 465 PHE A 223 REMARK 465 VAL A 224 REMARK 465 THR A 225 REMARK 465 GLY A 226 REMARK 465 THR A 227 REMARK 465 LYS A 228 REMARK 465 LYS A 229 REMARK 465 GLY A 230 REMARK 465 THR A 231 REMARK 465 THR A 232 REMARK 465 THR A 233 REMARK 465 ASN A 234 REMARK 465 ALA A 235 REMARK 465 THR A 236 REMARK 465 SER A 237 REMARK 465 THR A 238 REMARK 465 THR A 239 REMARK 465 THR A 240 REMARK 465 THR A 241 REMARK 465 THR A 242 REMARK 465 ALA A 243 REMARK 465 SER A 244 REMARK 465 THR A 245 REMARK 465 ALA A 246 REMARK 465 VAL A 247 REMARK 465 ALA A 248 REMARK 465 ASP A 249 REMARK 465 ALA A 250 REMARK 465 GLN A 251 REMARK 465 LYS A 252 REMARK 465 ARG A 253 REMARK 465 LYS A 254 REMARK 465 SER A 255 REMARK 465 LYS A 256 REMARK 465 TRP A 257 REMARK 465 ASP A 258 REMARK 465 SER A 259 REMARK 465 ALA A 260 REMARK 465 ILE A 261 REMARK 465 PRO A 262 REMARK 465 VAL A 263 REMARK 465 THR A 264 REMARK 465 THR A 265 REMARK 465 ILE A 266 REMARK 465 ALA A 267 REMARK 465 GLN A 268 REMARK 465 PRO A 269 REMARK 465 THR A 270 REMARK 465 ILE A 271 REMARK 465 LEU A 272 REMARK 465 THR A 273 REMARK 465 THR A 274 REMARK 465 THR A 275 REMARK 465 ALA A 276 REMARK 465 THR A 277 REMARK 465 LEU A 278 REMARK 465 PRO A 279 REMARK 465 ALA A 280 REMARK 465 VAL A 281 REMARK 465 VAL A 282 REMARK 465 THR A 283 REMARK 465 VAL A 284 REMARK 465 THR A 285 REMARK 465 THR A 286 REMARK 465 SER A 287 REMARK 465 ALA A 288 REMARK 465 SER A 289 REMARK 465 GLY A 290 REMARK 465 SER A 291 REMARK 465 LYS A 292 REMARK 465 THR A 293 REMARK 465 THR A 294 REMARK 465 VAL A 295 REMARK 465 ILE A 296 REMARK 465 SER A 297 REMARK 465 ALA A 298 REMARK 465 VAL A 299 REMARK 465 GLY A 300 REMARK 465 THR A 301 REMARK 465 ILE A 302 REMARK 465 VAL A 303 REMARK 465 LYS A 304 REMARK 465 LYS A 305 REMARK 465 ALA A 306 REMARK 465 LYS A 307 REMARK 465 GLN A 308 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 ALA C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 ALA C 3 REMARK 465 ALA C 4 REMARK 465 ALA C 5 REMARK 465 ALA C 6 REMARK 465 ALA C 7 REMARK 465 ALA C 8 REMARK 465 GLY C 9 REMARK 465 ALA C 10 REMARK 465 ALA C 11 REMARK 465 GLY C 12 REMARK 465 SER C 13 REMARK 465 ALA C 14 REMARK 465 ALA C 15 REMARK 465 PRO C 16 REMARK 465 ALA C 17 REMARK 465 ALA C 18 REMARK 465 ALA C 19 REMARK 465 ALA C 20 REMARK 465 GLY C 21 REMARK 465 ALA C 22 REMARK 465 PRO C 23 REMARK 465 GLY C 24 REMARK 465 SER C 25 REMARK 465 GLY C 26 REMARK 465 GLY C 27 REMARK 465 ALA C 28 REMARK 465 PRO C 29 REMARK 465 SER C 30 REMARK 465 GLY C 31 REMARK 465 SER C 32 REMARK 465 GLN C 33 REMARK 465 GLY C 34 REMARK 465 VAL C 35 REMARK 465 LEU C 36 REMARK 465 ILE C 37 REMARK 465 GLY C 38 REMARK 465 ASP C 39 REMARK 465 ARG C 40 REMARK 465 LEU C 41 REMARK 465 TYR C 42 REMARK 465 SER C 43 REMARK 465 GLY C 44 REMARK 465 VAL C 45 REMARK 465 LEU C 46 REMARK 465 ILE C 47 REMARK 465 THR C 48 REMARK 465 LEU C 49 REMARK 465 GLU C 50 REMARK 465 ASN C 51 REMARK 465 CYS C 52 REMARK 465 LEU C 53 REMARK 465 LEU C 54 REMARK 465 PRO C 55 REMARK 465 ASP C 56 REMARK 465 ASP C 57 REMARK 465 LYS C 58 REMARK 465 LEU C 59 REMARK 465 ARG C 60 REMARK 465 PHE C 61 REMARK 465 THR C 62 REMARK 465 PRO C 63 REMARK 465 SER C 64 REMARK 465 MET C 65 REMARK 465 SER C 66 REMARK 465 HIS C 303 REMARK 465 ALA C 304 REMARK 465 ILE C 305 REMARK 465 GLU C 306 REMARK 465 GLU C 307 REMARK 465 ALA C 308 REMARK 465 LYS C 309 REMARK 465 ALA C 310 REMARK 465 GLN C 311 REMARK 465 ALA C 312 REMARK 465 ARG C 313 REMARK 465 GLY C 314 REMARK 465 LEU C 315 REMARK 465 LEU C 316 REMARK 465 PRO C 317 REMARK 465 GLY C 318 REMARK 465 GLY C 319 REMARK 465 SER B 354 REMARK 465 ASN B 355 REMARK 465 ALA B 356 REMARK 465 MET B 357 REMARK 465 SER B 358 REMARK 465 GLU B 359 REMARK 465 ASP B 360 REMARK 465 GLU B 361 REMARK 465 GLU B 362 REMARK 465 ARG B 363 REMARK 465 GLU B 364 REMARK 465 ASN B 365 REMARK 465 GLU B 366 REMARK 465 ASN B 367 REMARK 465 HIS B 368 REMARK 465 LEU B 369 REMARK 465 LEU B 370 REMARK 465 VAL B 371 REMARK 465 VAL B 372 REMARK 465 PRO B 373 REMARK 465 GLU B 374 REMARK 465 SER B 375 REMARK 465 ARG B 376 REMARK 465 PHE B 377 REMARK 465 ASP B 378 REMARK 465 ARG B 379 REMARK 465 ASP B 380 REMARK 465 SER B 381 REMARK 465 GLY B 382 REMARK 465 GLU B 383 REMARK 465 SER B 384 REMARK 465 GLU B 385 REMARK 465 GLU B 386 REMARK 465 ALA B 387 REMARK 465 GLU B 388 REMARK 465 GLU B 389 REMARK 465 GLU B 390 REMARK 465 VAL B 391 REMARK 465 GLY B 392 REMARK 465 GLU B 393 REMARK 465 GLY B 394 REMARK 465 THR B 395 REMARK 465 PRO B 396 REMARK 465 GLN B 397 REMARK 465 SER B 398 REMARK 465 SER B 399 REMARK 465 ALA B 400 REMARK 465 LEU B 401 REMARK 465 THR B 402 REMARK 465 GLU B 403 REMARK 465 GLY B 404 REMARK 465 ASP B 405 REMARK 465 TYR B 406 REMARK 465 VAL B 407 REMARK 465 PRO B 408 REMARK 465 ASP B 409 REMARK 465 SER B 410 REMARK 465 PRO B 411 REMARK 465 ALA B 412 REMARK 465 LEU B 413 REMARK 465 SER B 414 REMARK 465 PRO B 415 REMARK 465 ILE B 416 REMARK 465 GLU B 417 REMARK 465 LEU B 418 REMARK 465 LYS B 419 REMARK 465 GLN B 420 REMARK 465 GLU B 421 REMARK 465 LEU B 422 REMARK 465 PRO B 423 REMARK 465 LYS B 424 REMARK 465 TYR B 425 REMARK 465 LEU B 426 REMARK 465 LYS B 741 REMARK 465 SER B 742 REMARK 465 GLU B 743 REMARK 465 GLN B 744 REMARK 465 GLN B 745 REMARK 465 ARG B 746 REMARK 465 VAL B 747 REMARK 465 LYS B 748 REMARK 465 ARG B 749 REMARK 465 SER B 763 REMARK 465 GLN B 764 REMARK 465 LEU B 765 REMARK 465 GLY B 766 REMARK 465 ASP B 767 REMARK 465 ASP B 768 REMARK 465 ASP B 769 REMARK 465 LEU B 770 REMARK 465 LYS B 771 REMARK 465 GLU B 772 REMARK 465 THR B 773 REMARK 465 GLY B 774 REMARK 465 PHE B 775 REMARK 465 HIS B 776 REMARK 465 LEU B 777 REMARK 465 THR B 778 REMARK 465 THR B 779 REMARK 465 THR B 780 REMARK 465 ASN B 781 REMARK 465 GLN B 782 REMARK 465 GLY B 783 REMARK 465 ALA B 784 REMARK 465 SER B 785 REMARK 465 ALA B 786 REMARK 465 ALA B 787 REMARK 465 GLY B 788 REMARK 465 PRO B 789 REMARK 465 GLY B 790 REMARK 465 PHE B 791 REMARK 465 SER B 792 REMARK 465 LEU B 793 REMARK 465 LYS B 794 REMARK 465 PHE B 795 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 449 O PRO B 755 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU C 291 -4.14 66.66 REMARK 500 TYR B 449 57.45 -90.50 REMARK 500 LYS B 473 53.85 -93.47 REMARK 500 ASP B 562 43.33 -141.04 REMARK 500 VAL B 599 143.63 69.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-53204 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-53221 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF THE CDK11B-CYCLIN L2-SAP30BP BOUND TO OTS964 REMARK 900 (CONFORMATION 1) DBREF 9QKT A 1 308 UNP Q9UHR5 S30BP_HUMAN 1 308 DBREF 9QKT C 1 319 UNP Q96S94 CCNL2_HUMAN 1 319 DBREF 9QKT B 357 795 UNP P21127 CD11B_HUMAN 357 795 SEQADV 9QKT SER A -2 UNP Q9UHR5 EXPRESSION TAG SEQADV 9QKT ASN A -1 UNP Q9UHR5 EXPRESSION TAG SEQADV 9QKT ALA A 0 UNP Q9UHR5 EXPRESSION TAG SEQADV 9QKT SER C -2 UNP Q96S94 EXPRESSION TAG SEQADV 9QKT ASN C -1 UNP Q96S94 EXPRESSION TAG SEQADV 9QKT ALA C 0 UNP Q96S94 EXPRESSION TAG SEQADV 9QKT SER B 354 UNP P21127 EXPRESSION TAG SEQADV 9QKT ASN B 355 UNP P21127 EXPRESSION TAG SEQADV 9QKT ALA B 356 UNP P21127 EXPRESSION TAG SEQRES 1 A 311 SER ASN ALA MET ALA GLY LYS LYS ASN VAL LEU SER SER SEQRES 2 A 311 LEU ALA VAL TYR ALA GLU ASP SER GLU PRO GLU SER ASP SEQRES 3 A 311 GLY GLU ALA GLY ILE GLU ALA VAL GLY SER ALA ALA GLU SEQRES 4 A 311 GLU LYS GLY GLY LEU VAL SER ASP ALA TYR GLY GLU ASP SEQRES 5 A 311 ASP PHE SER ARG LEU GLY GLY ASP GLU ASP GLY TYR GLU SEQRES 6 A 311 GLU GLU GLU ASP GLU ASN SER ARG GLN SER GLU ASP ASP SEQRES 7 A 311 ASP SER GLU THR GLU LYS PRO GLU ALA ASP ASP PRO LYS SEQRES 8 A 311 ASP ASN THR GLU ALA GLU LYS ARG ASP PRO GLN GLU LEU SEQRES 9 A 311 VAL ALA SER PHE SER GLU ARG VAL ARG ASN MET SER PRO SEQRES 10 A 311 ASP GLU ILE LYS ILE PRO PRO GLU PRO PRO GLY ARG CYS SEQRES 11 A 311 SER ASN HIS LEU GLN ASP LYS ILE GLN LYS LEU TYR GLU SEQRES 12 A 311 ARG LYS ILE LYS GLU GLY MET ASP MET ASN TYR ILE ILE SEQRES 13 A 311 GLN ARG LYS LYS GLU PHE ARG ASN PRO SER ILE TYR GLU SEQRES 14 A 311 LYS LEU ILE GLN PHE CYS ALA ILE ASP GLU LEU GLY THR SEQRES 15 A 311 ASN TYR PRO LYS ASP MET PHE ASP PRO HIS GLY TRP SER SEQRES 16 A 311 GLU ASP SER TYR TYR GLU ALA LEU ALA LYS ALA GLN LYS SEQRES 17 A 311 ILE GLU MET ASP LYS LEU GLU LYS ALA LYS LYS GLU ARG SEQRES 18 A 311 THR LYS ILE GLU PHE VAL THR GLY THR LYS LYS GLY THR SEQRES 19 A 311 THR THR ASN ALA THR SER THR THR THR THR THR ALA SER SEQRES 20 A 311 THR ALA VAL ALA ASP ALA GLN LYS ARG LYS SER LYS TRP SEQRES 21 A 311 ASP SER ALA ILE PRO VAL THR THR ILE ALA GLN PRO THR SEQRES 22 A 311 ILE LEU THR THR THR ALA THR LEU PRO ALA VAL VAL THR SEQRES 23 A 311 VAL THR THR SER ALA SER GLY SER LYS THR THR VAL ILE SEQRES 24 A 311 SER ALA VAL GLY THR ILE VAL LYS LYS ALA LYS GLN SEQRES 1 C 322 SER ASN ALA MET ALA ALA ALA ALA ALA ALA ALA GLY ALA SEQRES 2 C 322 ALA GLY SER ALA ALA PRO ALA ALA ALA ALA GLY ALA PRO SEQRES 3 C 322 GLY SER GLY GLY ALA PRO SER GLY SER GLN GLY VAL LEU SEQRES 4 C 322 ILE GLY ASP ARG LEU TYR SER GLY VAL LEU ILE THR LEU SEQRES 5 C 322 GLU ASN CYS LEU LEU PRO ASP ASP LYS LEU ARG PHE THR SEQRES 6 C 322 PRO SER MET SER SER GLY LEU ASP THR ASP THR GLU THR SEQRES 7 C 322 ASP LEU ARG VAL VAL GLY CYS GLU LEU ILE GLN ALA ALA SEQRES 8 C 322 GLY ILE LEU LEU ARG LEU PRO GLN VAL ALA MET ALA THR SEQRES 9 C 322 GLY GLN VAL LEU PHE GLN ARG PHE PHE TYR THR LYS SER SEQRES 10 C 322 PHE VAL LYS HIS SER MET GLU HIS VAL SER MET ALA CYS SEQRES 11 C 322 VAL HIS LEU ALA SER LYS ILE GLU GLU ALA PRO ARG ARG SEQRES 12 C 322 ILE ARG ASP VAL ILE ASN VAL PHE HIS ARG LEU ARG GLN SEQRES 13 C 322 LEU ARG ASP LYS LYS LYS PRO VAL PRO LEU LEU LEU ASP SEQRES 14 C 322 GLN ASP TYR VAL ASN LEU LYS ASN GLN ILE ILE LYS ALA SEQRES 15 C 322 GLU ARG ARG VAL LEU LYS GLU LEU GLY PHE CYS VAL HIS SEQRES 16 C 322 VAL LYS HIS PRO HIS LYS ILE ILE VAL MET TYR LEU GLN SEQRES 17 C 322 VAL LEU GLU CYS GLU ARG ASN GLN HIS LEU VAL GLN THR SEQRES 18 C 322 SER TRP ASN TYR MET ASN ASP SER LEU ARG THR ASP VAL SEQRES 19 C 322 PHE VAL ARG PHE GLN PRO GLU SER ILE ALA CYS ALA CYS SEQRES 20 C 322 ILE TYR LEU ALA ALA ARG THR LEU GLU ILE PRO LEU PRO SEQRES 21 C 322 ASN ARG PRO HIS TRP PHE LEU LEU PHE GLY ALA THR GLU SEQRES 22 C 322 GLU GLU ILE GLN GLU ILE CYS LEU LYS ILE LEU GLN LEU SEQRES 23 C 322 TYR ALA ARG LYS LYS VAL ASP LEU THR HIS LEU GLU GLY SEQRES 24 C 322 GLU VAL GLU LYS ARG LYS HIS ALA ILE GLU GLU ALA LYS SEQRES 25 C 322 ALA GLN ALA ARG GLY LEU LEU PRO GLY GLY SEQRES 1 B 442 SER ASN ALA MET SER GLU ASP GLU GLU ARG GLU ASN GLU SEQRES 2 B 442 ASN HIS LEU LEU VAL VAL PRO GLU SER ARG PHE ASP ARG SEQRES 3 B 442 ASP SER GLY GLU SER GLU GLU ALA GLU GLU GLU VAL GLY SEQRES 4 B 442 GLU GLY THR PRO GLN SER SER ALA LEU THR GLU GLY ASP SEQRES 5 B 442 TYR VAL PRO ASP SER PRO ALA LEU SER PRO ILE GLU LEU SEQRES 6 B 442 LYS GLN GLU LEU PRO LYS TYR LEU PRO ALA LEU GLN GLY SEQRES 7 B 442 CYS ARG SER VAL GLU GLU PHE GLN CYS LEU ASN ARG ILE SEQRES 8 B 442 GLU GLU GLY THR TYR GLY VAL VAL TYR ARG ALA LYS ASP SEQRES 9 B 442 LYS LYS THR ASP GLU ILE VAL ALA LEU LYS ARG LEU LYS SEQRES 10 B 442 MET GLU LYS GLU LYS GLU GLY PHE PRO ILE THR SER LEU SEQRES 11 B 442 ARG GLU ILE ASN THR ILE LEU LYS ALA GLN HIS PRO ASN SEQRES 12 B 442 ILE VAL THR VAL ARG GLU ILE VAL VAL GLY SER ASN MET SEQRES 13 B 442 ASP LYS ILE TYR ILE VAL MET ASN TYR VAL GLU HIS ASP SEQRES 14 B 442 LEU LYS SER LEU MET GLU THR MET LYS GLN PRO PHE LEU SEQRES 15 B 442 PRO GLY GLU VAL LYS THR LEU MET ILE GLN LEU LEU ARG SEQRES 16 B 442 GLY VAL LYS HIS LEU HIS ASP ASN TRP ILE LEU HIS ARG SEQRES 17 B 442 ASP LEU LYS THR SER ASN LEU LEU LEU SER HIS ALA GLY SEQRES 18 B 442 ILE LEU LYS VAL GLY ASP PHE GLY LEU ALA ARG GLU TYR SEQRES 19 B 442 GLY SER PRO LEU LYS ALA TYR TPO PRO VAL VAL VAL THR SEQRES 20 B 442 LEU TRP TYR ARG ALA PRO GLU LEU LEU LEU GLY ALA LYS SEQRES 21 B 442 GLU TYR SER THR ALA VAL ASP MET TRP SER VAL GLY CYS SEQRES 22 B 442 ILE PHE GLY GLU LEU LEU THR GLN LYS PRO LEU PHE PRO SEQRES 23 B 442 GLY LYS SER GLU ILE ASP GLN ILE ASN LYS VAL PHE LYS SEQRES 24 B 442 ASP LEU GLY THR PRO SER GLU LYS ILE TRP PRO GLY TYR SEQRES 25 B 442 SER GLU LEU PRO ALA VAL LYS LYS MET THR PHE SER GLU SEQRES 26 B 442 HIS PRO TYR ASN ASN LEU ARG LYS ARG PHE GLY ALA LEU SEQRES 27 B 442 LEU SER ASP GLN GLY PHE ASP LEU MET ASN LYS PHE LEU SEQRES 28 B 442 THR TYR PHE PRO GLY ARG ARG ILE SER ALA GLU ASP GLY SEQRES 29 B 442 LEU LYS HIS GLU TYR PHE ARG GLU THR PRO LEU PRO ILE SEQRES 30 B 442 ASP PRO SER MET PHE PRO THR TRP PRO ALA LYS SER GLU SEQRES 31 B 442 GLN GLN ARG VAL LYS ARG GLY THR SEP PRO ARG PRO PRO SEQRES 32 B 442 GLU GLY GLY LEU GLY TYR SER GLN LEU GLY ASP ASP ASP SEQRES 33 B 442 LEU LYS GLU THR GLY PHE HIS LEU THR THR THR ASN GLN SEQRES 34 B 442 GLY ALA SER ALA ALA GLY PRO GLY PHE SER LEU LYS PHE MODRES 9QKT TPO B 595 THR MODIFIED RESIDUE MODRES 9QKT SEP B 752 SER MODIFIED RESIDUE HET TPO B 595 11 HET SEP B 752 10 HET NK3 B 801 28 HETNAM TPO PHOSPHOTHREONINE HETNAM SEP PHOSPHOSERINE HETNAM NK3 OTS964 HETSYN TPO PHOSPHONOTHREONINE HETSYN SEP PHOSPHONOSERINE FORMUL 3 TPO C4 H10 N O6 P FORMUL 3 SEP C3 H8 N O6 P FORMUL 4 NK3 C23 H24 N2 O2 S FORMUL 5 HOH *80(H2 O) HELIX 1 AA1 PRO A 98 ASN A 111 1 14 HELIX 2 AA2 SER A 113 ILE A 117 5 5 HELIX 3 AA3 SER A 128 GLY A 146 1 19 HELIX 4 AA4 ASP A 148 LYS A 156 1 9 HELIX 5 AA5 SER A 163 ALA A 173 1 11 HELIX 6 AA6 SER A 192 SER A 195 5 4 HELIX 7 AA7 TYR A 196 LYS A 215 1 20 HELIX 8 AA8 ASP C 70 LEU C 92 1 23 HELIX 9 AA9 PRO C 95 THR C 112 1 18 HELIX 10 AB1 SER C 119 GLU C 135 1 17 HELIX 11 AB2 ARG C 140 ASP C 156 1 17 HELIX 12 AB3 ASP C 166 LEU C 187 1 22 HELIX 13 AB4 PRO C 196 LEU C 207 1 12 HELIX 14 AB5 ASN C 212 LEU C 227 1 16 HELIX 15 AB6 ASP C 230 PHE C 235 1 6 HELIX 16 AB7 GLN C 236 LEU C 252 1 17 HELIX 17 AB8 HIS C 261 GLY C 267 5 7 HELIX 18 AB9 THR C 269 ALA C 285 1 17 HELIX 19 AC1 THR C 292 LYS C 302 1 11 HELIX 20 AC2 PRO B 479 ALA B 492 1 14 HELIX 21 AC3 LEU B 523 THR B 529 1 7 HELIX 22 AC4 LEU B 535 ASN B 556 1 22 HELIX 23 AC5 LYS B 564 SER B 566 5 3 HELIX 24 AC6 THR B 600 ARG B 604 5 5 HELIX 25 AC7 ALA B 605 LEU B 610 1 6 HELIX 26 AC8 THR B 617 GLN B 634 1 18 HELIX 27 AC9 SER B 642 GLY B 655 1 14 HELIX 28 AD1 LEU B 668 MET B 674 1 7 HELIX 29 AD2 ASN B 683 GLY B 689 5 7 HELIX 30 AD3 SER B 693 LEU B 704 1 12 HELIX 31 AD4 SER B 713 LYS B 719 1 7 HELIX 32 AD5 HIS B 720 ARG B 724 5 5 HELIX 33 AD6 ASP B 731 PHE B 735 5 5 SHEET 1 AA1 6 ARG B 433 SER B 434 0 SHEET 2 AA1 6 VAL B 500 VAL B 505 1 O VAL B 505 N ARG B 433 SHEET 3 AA1 6 ILE B 512 ASN B 517 -1 O TYR B 513 N VAL B 504 SHEET 4 AA1 6 ILE B 463 ARG B 468 -1 N ALA B 465 O MET B 516 SHEET 5 AA1 6 VAL B 451 ASP B 457 -1 N ALA B 455 O VAL B 464 SHEET 6 AA1 6 PHE B 438 GLU B 445 -1 N ASN B 442 O ARG B 454 SHEET 1 AA2 3 HIS B 521 ASP B 522 0 SHEET 2 AA2 3 LEU B 568 LEU B 570 -1 O LEU B 570 N HIS B 521 SHEET 3 AA2 3 LEU B 576 VAL B 578 -1 O LYS B 577 N LEU B 569 SHEET 1 AA3 2 ILE B 558 LEU B 559 0 SHEET 2 AA3 2 ARG B 585 GLU B 586 -1 O ARG B 585 N LEU B 559 LINK C TYR B 594 N TPO B 595 1555 1555 1.33 LINK C TPO B 595 N PRO B 596 1555 1555 1.34 LINK C THR B 751 N SEP B 752 1555 1555 1.33 LINK C SEP B 752 N PRO B 753 1555 1555 1.34 CISPEP 1 ARG C 259 PRO C 260 0 -3.78 CISPEP 2 SER B 589 PRO B 590 0 4.13 CISPEP 3 THR B 726 PRO B 727 0 -1.86 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 4255 4265 CONECT 4265 4255 4266 CONECT 4266 4265 4267 4274 CONECT 4267 4266 4268 4269 CONECT 4268 4267 CONECT 4269 4267 4270 CONECT 4270 4269 4271 4272 4273 CONECT 4271 4270 CONECT 4272 4270 CONECT 4273 4270 CONECT 4274 4266 4275 4276 CONECT 4275 4274 CONECT 4276 4274 CONECT 5456 5461 CONECT 5461 5456 5462 CONECT 5462 5461 5463 5465 CONECT 5463 5462 5464 CONECT 5464 5463 5467 CONECT 5465 5462 5466 5471 CONECT 5466 5465 CONECT 5467 5464 5468 5469 5470 CONECT 5468 5467 CONECT 5469 5467 CONECT 5470 5467 CONECT 5471 5465 CONECT 5545 5546 5549 CONECT 5546 5545 5547 5548 CONECT 5547 5546 CONECT 5548 5546 CONECT 5549 5545 5553 5568 CONECT 5550 5554 5567 CONECT 5551 5552 5554 CONECT 5552 5551 5553 CONECT 5553 5549 5552 5567 CONECT 5554 5550 5551 5561 CONECT 5555 5556 5566 CONECT 5556 5555 5562 5565 CONECT 5557 5558 CONECT 5558 5557 5559 5563 CONECT 5559 5558 5560 CONECT 5560 5559 5561 5571 CONECT 5561 5554 5560 5562 CONECT 5562 5556 5561 5563 CONECT 5563 5558 5562 5569 CONECT 5564 5565 5569 5570 CONECT 5565 5556 5564 5572 CONECT 5566 5555 5572 CONECT 5567 5550 5553 CONECT 5568 5549 CONECT 5569 5563 5564 CONECT 5570 5564 CONECT 5571 5560 CONECT 5572 5565 5566 MASTER 538 0 3 33 11 0 0 6 5649 3 53 83 END