HEADER OXIDOREDUCTASE 20-MAR-25 9QL8 TITLE STRUCTURE OF RHYZOPERTHA DOMINICA DIHYDROLIPOYL DEHYDROGENASE VARIANT TITLE 2 S425G AT 1.3 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROLIPOYL DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.8.1.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHYZOPERTHA DOMINICA; SOURCE 3 ORGANISM_COMMON: LESSER GRAIN BORER; SOURCE 4 ORGANISM_TAXID: 92692; SOURCE 5 GENE: DLD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS OXIDOREDUCTASE, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.RABE VON PAPPENHEIM,K.TITTMANN REVDAT 1 30-SEP-26 9QL8 0 JRNL AUTH F.RABE VON PAPPENHEIM,K.TITTMANN JRNL TITL STRUCTURE OF RHYZOPERTHA DOMINICA DIHYDROLIPOYL JRNL TITL 2 DEHYDROGENASE VARIANT S425G AT 1.3 ANGSTROM RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 215435 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 10791 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 71.5300 - 4.0400 0.99 7227 377 0.1456 0.1592 REMARK 3 2 4.0400 - 3.2100 1.00 7001 368 0.1324 0.1594 REMARK 3 3 3.2100 - 2.8000 1.00 6936 353 0.1373 0.1697 REMARK 3 4 2.8000 - 2.5400 1.00 6915 373 0.1303 0.1502 REMARK 3 5 2.5400 - 2.3600 1.00 6877 373 0.1239 0.1563 REMARK 3 6 2.3600 - 2.2200 1.00 6817 377 0.1187 0.1579 REMARK 3 7 2.2200 - 2.1100 1.00 6864 346 0.1200 0.1477 REMARK 3 8 2.1100 - 2.0200 1.00 6854 331 0.1271 0.1633 REMARK 3 9 2.0200 - 1.9400 1.00 6846 367 0.1274 0.1689 REMARK 3 10 1.9400 - 1.8700 1.00 6811 352 0.1273 0.1605 REMARK 3 11 1.8700 - 1.8200 1.00 6811 364 0.1301 0.1819 REMARK 3 12 1.8200 - 1.7600 1.00 6736 375 0.1295 0.1782 REMARK 3 13 1.7600 - 1.7200 0.99 6781 366 0.1262 0.1860 REMARK 3 14 1.7200 - 1.6800 1.00 6778 362 0.1218 0.1755 REMARK 3 15 1.6800 - 1.6400 1.00 6823 352 0.1181 0.1536 REMARK 3 16 1.6400 - 1.6000 1.00 6770 343 0.1187 0.1650 REMARK 3 17 1.6000 - 1.5700 1.00 6839 358 0.1257 0.1611 REMARK 3 18 1.5700 - 1.5400 1.00 6764 364 0.1338 0.1907 REMARK 3 19 1.5400 - 1.5100 1.00 6751 350 0.1494 0.2051 REMARK 3 20 1.5100 - 1.4900 1.00 6765 364 0.1520 0.1947 REMARK 3 21 1.4900 - 1.4600 1.00 6784 353 0.1621 0.1895 REMARK 3 22 1.4600 - 1.4400 1.00 6789 358 0.1673 0.2072 REMARK 3 23 1.4400 - 1.4200 1.00 6744 341 0.1884 0.2224 REMARK 3 24 1.4200 - 1.4000 1.00 6784 359 0.2096 0.2489 REMARK 3 25 1.4000 - 1.3800 1.00 6786 389 0.2052 0.2439 REMARK 3 26 1.3800 - 1.3600 1.00 6680 370 0.2343 0.2699 REMARK 3 27 1.3600 - 1.3500 1.00 6831 334 0.2318 0.2622 REMARK 3 28 1.3500 - 1.3300 1.00 6735 356 0.2371 0.2563 REMARK 3 29 1.3300 - 1.3100 1.00 6739 345 0.2402 0.2891 REMARK 3 30 1.3100 - 1.3000 1.00 6806 371 0.2578 0.2973 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.125 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.973 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 7843 REMARK 3 ANGLE : 0.999 10713 REMARK 3 CHIRALITY : 0.080 1221 REMARK 3 PLANARITY : 0.008 1407 REMARK 3 DIHEDRAL : 13.468 2895 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9QL8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1292145174. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-SEP-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X CDTE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 215447 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 71.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 13.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.160 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, MAGNESIUM CHLORIDE, PEG3350, REMARK 280 FORMAMIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.45700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.52950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.91400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.52950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.45700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.91400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 35 REMARK 465 THR B 36 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD22 ASN B 430 O HOH B 702 1.41 REMARK 500 HZ3 LYS A 164 OE2 GLU A 170 1.52 REMARK 500 HZ1 LYS A 415 O HOH A 706 1.57 REMARK 500 OE2 GLU A 367 HH TYR A 384 1.59 REMARK 500 O HOH B 1075 O HOH B 1327 1.81 REMARK 500 O HOH A 1257 O HOH A 1400 1.90 REMARK 500 O HOH B 702 O HOH B 908 1.93 REMARK 500 O HOH B 1138 O HOH B 1201 1.95 REMARK 500 O HOH A 839 O HOH A 1278 1.97 REMARK 500 O HOH A 1271 O HOH A 1312 2.00 REMARK 500 O HOH A 773 O HOH A 988 2.02 REMARK 500 O HOH B 1297 O HOH B 1341 2.02 REMARK 500 O HOH A 937 O HOH A 968 2.03 REMARK 500 O HOH B 1224 O HOH B 1345 2.03 REMARK 500 NZ LYS B 287 O HOH B 701 2.03 REMARK 500 O HOH B 1119 O HOH B 1228 2.03 REMARK 500 O HOH B 975 O HOH B 1268 2.05 REMARK 500 O HOH A 1207 O HOH A 1365 2.05 REMARK 500 O HOH A 956 O HOH A 1246 2.06 REMARK 500 O HOH B 707 O HOH B 1029 2.06 REMARK 500 O HOH A 1201 O HOH A 1383 2.08 REMARK 500 O HOH A 839 O HOH A 1018 2.09 REMARK 500 O HOH A 937 O HOH A 1172 2.10 REMARK 500 O HOH A 1285 O HOH A 1352 2.10 REMARK 500 O HOH A 715 O HOH A 905 2.10 REMARK 500 O HOH B 1044 O HOH B 1101 2.11 REMARK 500 O HOH A 916 O HOH A 963 2.12 REMARK 500 O HOH A 715 O HOH A 1365 2.13 REMARK 500 O HOH B 1078 O HOH B 1225 2.13 REMARK 500 O HOH B 879 O HOH B 1279 2.14 REMARK 500 O HOH B 723 O HOH B 1101 2.14 REMARK 500 O HOH A 742 O HOH A 1355 2.14 REMARK 500 NZ LYS A 164 OE2 GLU A 170 2.17 REMARK 500 O HOH A 703 O HOH A 1216 2.17 REMARK 500 O HOH B 826 O HOH B 833 2.18 REMARK 500 O HOH A 1138 O HOH B 1192 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1293 O HOH B 1201 2555 2.02 REMARK 500 NZ LYS A 299 O VAL B 111 3644 2.11 REMARK 500 O HOH A 1134 O HOH B 775 4544 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 113 88.34 -160.95 REMARK 500 ALA A 219 35.50 -96.39 REMARK 500 THR A 317 26.65 -143.85 REMARK 500 THR A 343 -175.26 -66.57 REMARK 500 THR A 393 -178.26 -62.98 REMARK 500 PRO B 165 20.63 -59.44 REMARK 500 ALA B 180 54.44 -140.54 REMARK 500 ALA B 285 -154.43 -135.68 REMARK 500 PRO B 296 -7.71 -58.35 REMARK 500 PRO B 296 -7.71 -59.24 REMARK 500 CYS B 310 47.77 -147.83 REMARK 500 THR B 317 27.33 -140.85 REMARK 500 THR B 317 27.08 -140.85 REMARK 500 THR B 393 -178.47 -65.77 REMARK 500 ASP B 432 87.42 -151.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1420 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A1421 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A1422 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A1423 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A1424 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH A1425 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A1426 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH B1348 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH B1349 DISTANCE = 7.34 ANGSTROMS REMARK 525 HOH B1350 DISTANCE = 7.88 ANGSTROMS DBREF 9QL8 A 35 507 UNP K7PQ54 K7PQ54_RHYDO 35 507 DBREF 9QL8 B 35 507 UNP K7PQ54 K7PQ54_RHYDO 35 507 SEQADV 9QL8 GLY A 425 UNP K7PQ54 SER 425 ENGINEERED MUTATION SEQADV 9QL8 GLY B 425 UNP K7PQ54 SER 425 ENGINEERED MUTATION SEQRES 1 A 473 SER THR THR HIS GLU ALA ASP ILE VAL VAL ILE GLY SER SEQRES 2 A 473 GLY PRO GLY GLY TYR VAL ALA ALA ILE LYS ALA THR GLN SEQRES 3 A 473 LEU GLY PHE LYS THR VAL CYS ILE GLU LYS ASN PRO THR SEQRES 4 A 473 LEU GLY GLY THR CYS LEU ASN VAL GLY CYS ILE PRO SER SEQRES 5 A 473 LYS ALA LEU LEU ASN ASN SER HIS TYR TYR HIS MET ALA SEQRES 6 A 473 HIS SER GLY GLU LEU ALA GLU ARG GLY VAL THR VAL SER SEQRES 7 A 473 ASN VAL GLU LEU ASN LEU ASP LYS LEU MET GLN THR LYS SEQRES 8 A 473 SER ASN ALA VAL LYS ALA LEU THR GLY GLY ILE ALA MET SEQRES 9 A 473 LEU PHE LYS LYS ASN LYS VAL HIS LEU ILE ASN GLY HIS SEQRES 10 A 473 GLY LYS ILE THR GLY ASN ASN GLN VAL THR ALA LEU LYS SEQRES 11 A 473 PRO ASP GLY SER SER GLU VAL VAL ASN THR LYS ASN ILE SEQRES 12 A 473 LEU ILE ALA THR GLY SER GLU VAL THR PRO PHE GLN GLY SEQRES 13 A 473 ILE PRO ILE ASP GLU GLU THR ILE VAL SER SER THR GLY SEQRES 14 A 473 ALA LEU SER LEU LYS GLN VAL PRO LYS ARG LEU VAL VAL SEQRES 15 A 473 ILE GLY ALA GLY VAL ILE GLY LEU GLU LEU GLY SER VAL SEQRES 16 A 473 TRP SER ARG LEU GLY ALA ASP VAL THR ALA VAL GLU PHE SEQRES 17 A 473 LEU ASN SER ILE GLY GLY ALA GLY ILE ASP GLY GLU VAL SEQRES 18 A 473 ALA GLN THR PHE GLN LYS VAL LEU THR LYS GLN GLY LEU SEQRES 19 A 473 LYS PHE LYS LEU GLY THR LYS VAL THR SER ALA GLN LYS SEQRES 20 A 473 THR GLY GLY ALA ILE LYS VAL SER VAL GLU ASP VAL LYS SEQRES 21 A 473 ASN PRO GLU LYS LYS GLU ASP LEU GLU CYS ASP VAL LEU SEQRES 22 A 473 LEU VAL CYS VAL GLY ARG ARG PRO TYR THR GLU ASN LEU SEQRES 23 A 473 GLY LEU GLU GLU MET GLY ILE GLU ARG ASP GLN ARG GLY SEQRES 24 A 473 CYS ILE PRO VAL ASN SER HIS PHE GLN THR VAL ILE PRO SEQRES 25 A 473 ASN ILE TYR ALA ILE GLY ASP CYS ILE HIS GLY PRO MET SEQRES 26 A 473 LEU ALA HIS LYS ALA GLU ASP GLU GLY ILE ILE CYS VAL SEQRES 27 A 473 GLU GLY ILE LYS GLY GLY PRO VAL HIS ILE ASP TYR ASN SEQRES 28 A 473 CYS VAL PRO SER VAL ILE TYR THR HIS PRO GLU VAL GLY SEQRES 29 A 473 TRP VAL GLY LYS THR GLU GLU ASP LEU LYS SER GLU GLY SEQRES 30 A 473 VAL ASN TYR LYS VAL GLY LYS PHE PRO PHE LEU ALA ASN SEQRES 31 A 473 GLY ARG ALA LYS THR ASN ASN ASP THR ASP GLY PHE VAL SEQRES 32 A 473 LYS VAL LEU SER ASP LYS ASN THR ASP ARG ILE LEU GLY SEQRES 33 A 473 THR HIS ILE ILE GLY PRO MET ALA GLY GLU LEU ILE ASN SEQRES 34 A 473 GLU ALA VAL LEU ALA GLN GLU TYR GLY ALA SER SER GLU SEQRES 35 A 473 ASP VAL ALA ARG VAL CYS HIS ALA HIS PRO THR CYS SER SEQRES 36 A 473 GLU ALA LEU ARG GLU ALA ASN LEU ALA ALA TYR PHE GLY SEQRES 37 A 473 LYS PRO ILE ASN PHE SEQRES 1 B 473 SER THR THR HIS GLU ALA ASP ILE VAL VAL ILE GLY SER SEQRES 2 B 473 GLY PRO GLY GLY TYR VAL ALA ALA ILE LYS ALA THR GLN SEQRES 3 B 473 LEU GLY PHE LYS THR VAL CYS ILE GLU LYS ASN PRO THR SEQRES 4 B 473 LEU GLY GLY THR CYS LEU ASN VAL GLY CYS ILE PRO SER SEQRES 5 B 473 LYS ALA LEU LEU ASN ASN SER HIS TYR TYR HIS MET ALA SEQRES 6 B 473 HIS SER GLY GLU LEU ALA GLU ARG GLY VAL THR VAL SER SEQRES 7 B 473 ASN VAL GLU LEU ASN LEU ASP LYS LEU MET GLN THR LYS SEQRES 8 B 473 SER ASN ALA VAL LYS ALA LEU THR GLY GLY ILE ALA MET SEQRES 9 B 473 LEU PHE LYS LYS ASN LYS VAL HIS LEU ILE ASN GLY HIS SEQRES 10 B 473 GLY LYS ILE THR GLY ASN ASN GLN VAL THR ALA LEU LYS SEQRES 11 B 473 PRO ASP GLY SER SER GLU VAL VAL ASN THR LYS ASN ILE SEQRES 12 B 473 LEU ILE ALA THR GLY SER GLU VAL THR PRO PHE GLN GLY SEQRES 13 B 473 ILE PRO ILE ASP GLU GLU THR ILE VAL SER SER THR GLY SEQRES 14 B 473 ALA LEU SER LEU LYS GLN VAL PRO LYS ARG LEU VAL VAL SEQRES 15 B 473 ILE GLY ALA GLY VAL ILE GLY LEU GLU LEU GLY SER VAL SEQRES 16 B 473 TRP SER ARG LEU GLY ALA ASP VAL THR ALA VAL GLU PHE SEQRES 17 B 473 LEU ASN SER ILE GLY GLY ALA GLY ILE ASP GLY GLU VAL SEQRES 18 B 473 ALA GLN THR PHE GLN LYS VAL LEU THR LYS GLN GLY LEU SEQRES 19 B 473 LYS PHE LYS LEU GLY THR LYS VAL THR SER ALA GLN LYS SEQRES 20 B 473 THR GLY GLY ALA ILE LYS VAL SER VAL GLU ASP VAL LYS SEQRES 21 B 473 ASN PRO GLU LYS LYS GLU ASP LEU GLU CYS ASP VAL LEU SEQRES 22 B 473 LEU VAL CYS VAL GLY ARG ARG PRO TYR THR GLU ASN LEU SEQRES 23 B 473 GLY LEU GLU GLU MET GLY ILE GLU ARG ASP GLN ARG GLY SEQRES 24 B 473 CYS ILE PRO VAL ASN SER HIS PHE GLN THR VAL ILE PRO SEQRES 25 B 473 ASN ILE TYR ALA ILE GLY ASP CYS ILE HIS GLY PRO MET SEQRES 26 B 473 LEU ALA HIS LYS ALA GLU ASP GLU GLY ILE ILE CYS VAL SEQRES 27 B 473 GLU GLY ILE LYS GLY GLY PRO VAL HIS ILE ASP TYR ASN SEQRES 28 B 473 CYS VAL PRO SER VAL ILE TYR THR HIS PRO GLU VAL GLY SEQRES 29 B 473 TRP VAL GLY LYS THR GLU GLU ASP LEU LYS SER GLU GLY SEQRES 30 B 473 VAL ASN TYR LYS VAL GLY LYS PHE PRO PHE LEU ALA ASN SEQRES 31 B 473 GLY ARG ALA LYS THR ASN ASN ASP THR ASP GLY PHE VAL SEQRES 32 B 473 LYS VAL LEU SER ASP LYS ASN THR ASP ARG ILE LEU GLY SEQRES 33 B 473 THR HIS ILE ILE GLY PRO MET ALA GLY GLU LEU ILE ASN SEQRES 34 B 473 GLU ALA VAL LEU ALA GLN GLU TYR GLY ALA SER SER GLU SEQRES 35 B 473 ASP VAL ALA ARG VAL CYS HIS ALA HIS PRO THR CYS SER SEQRES 36 B 473 GLU ALA LEU ARG GLU ALA ASN LEU ALA ALA TYR PHE GLY SEQRES 37 B 473 LYS PRO ILE ASN PHE HET FAD A 601 84 HET TRS A 602 20 HET TRS A 603 20 HET FAD B 601 84 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 TRS 2(C4 H12 N O3 1+) FORMUL 7 HOH *1376(H2 O) HELIX 1 AA1 GLY A 48 LEU A 61 1 14 HELIX 2 AA2 GLY A 75 GLY A 82 1 8 HELIX 3 AA3 GLY A 82 SER A 101 1 20 HELIX 4 AA4 GLY A 102 ARG A 107 1 6 HELIX 5 AA5 ASN A 117 ASN A 143 1 27 HELIX 6 AA6 SER A 200 LEU A 205 1 6 HELIX 7 AA7 GLY A 220 GLY A 234 1 15 HELIX 8 AA8 ASP A 252 GLN A 266 1 15 HELIX 9 AA9 GLY A 321 GLY A 326 1 6 HELIX 10 AB1 GLY A 352 ILE A 355 5 4 HELIX 11 AB2 LEU A 360 GLY A 377 1 18 HELIX 12 AB3 ASP A 383 VAL A 387 5 5 HELIX 13 AB4 THR A 403 GLY A 411 1 9 HELIX 14 AB5 ASN A 424 ASN A 430 1 7 HELIX 15 AB6 MET A 457 TYR A 471 1 15 HELIX 16 AB7 SER A 474 ARG A 480 1 7 HELIX 17 AB8 SER A 489 GLY A 502 1 14 HELIX 18 AB9 GLY B 48 LEU B 61 1 14 HELIX 19 AC1 GLY B 75 GLY B 82 1 8 HELIX 20 AC2 GLY B 82 SER B 101 1 20 HELIX 21 AC3 GLY B 102 ARG B 107 1 6 HELIX 22 AC4 ASN B 117 LYS B 144 1 28 HELIX 23 AC5 SER B 200 LEU B 205 1 6 HELIX 24 AC6 GLY B 220 LEU B 233 1 14 HELIX 25 AC7 ASP B 252 GLN B 266 1 15 HELIX 26 AC8 GLY B 321 GLY B 326 1 6 HELIX 27 AC9 GLY B 352 ILE B 355 5 4 HELIX 28 AD1 LEU B 360 GLY B 377 1 18 HELIX 29 AD2 ASP B 383 VAL B 387 5 5 HELIX 30 AD3 THR B 403 GLY B 411 1 9 HELIX 31 AD4 ASN B 424 ASN B 430 1 7 HELIX 32 AD5 MET B 457 TYR B 471 1 15 HELIX 33 AD6 SER B 474 ARG B 480 1 7 HELIX 34 AD7 CYS B 488 GLY B 502 1 15 SHEET 1 AA1 6 HIS A 146 ASN A 149 0 SHEET 2 AA1 6 THR A 65 GLU A 69 1 N CYS A 67 O ILE A 148 SHEET 3 AA1 6 THR A 37 ILE A 45 1 N VAL A 44 O VAL A 66 SHEET 4 AA1 6 SER A 169 ILE A 179 1 O LEU A 178 N VAL A 43 SHEET 5 AA1 6 GLN A 159 LEU A 163 -1 N ALA A 162 O GLU A 170 SHEET 6 AA1 6 HIS A 151 GLY A 156 -1 N LYS A 153 O THR A 161 SHEET 1 AA2 5 HIS A 146 ASN A 149 0 SHEET 2 AA2 5 THR A 65 GLU A 69 1 N CYS A 67 O ILE A 148 SHEET 3 AA2 5 THR A 37 ILE A 45 1 N VAL A 44 O VAL A 66 SHEET 4 AA2 5 SER A 169 ILE A 179 1 O LEU A 178 N VAL A 43 SHEET 5 AA2 5 ILE A 348 ALA A 350 1 O TYR A 349 N ILE A 179 SHEET 1 AA3 2 VAL A 109 SER A 112 0 SHEET 2 AA3 2 ASN B 113 LEU B 116 -1 O GLU B 115 N THR A 110 SHEET 1 AA4 2 GLU A 115 LEU A 116 0 SHEET 2 AA4 2 VAL B 109 THR B 110 -1 O THR B 110 N GLU A 115 SHEET 1 AA5 2 SER A 183 VAL A 185 0 SHEET 2 AA5 2 ARG A 313 PRO A 315 -1 O ARG A 314 N GLU A 184 SHEET 1 AA6 5 ILE A 198 VAL A 199 0 SHEET 2 AA6 5 VAL A 306 VAL A 309 1 O VAL A 309 N VAL A 199 SHEET 3 AA6 5 ARG A 213 ILE A 217 1 N ILE A 217 O LEU A 308 SHEET 4 AA6 5 ASP A 236 VAL A 240 1 O VAL A 240 N VAL A 216 SHEET 5 AA6 5 LYS A 269 LYS A 271 1 O LYS A 269 N ALA A 239 SHEET 1 AA7 3 THR A 274 THR A 282 0 SHEET 2 AA7 3 ALA A 285 ASP A 292 -1 O LYS A 287 N GLN A 280 SHEET 3 AA7 3 LYS A 299 CYS A 304 -1 O LEU A 302 N VAL A 288 SHEET 1 AA8 5 SER A 389 ILE A 391 0 SHEET 2 AA8 5 GLU A 396 GLY A 401 -1 O VAL A 397 N ILE A 391 SHEET 3 AA8 5 ILE A 448 GLY A 455 -1 O ILE A 453 N GLY A 398 SHEET 4 AA8 5 PHE A 436 ASP A 442 -1 N LEU A 440 O LEU A 449 SHEET 5 AA8 5 TYR A 414 PRO A 420 -1 N LYS A 415 O SER A 441 SHEET 1 AA9 6 HIS B 146 ASN B 149 0 SHEET 2 AA9 6 THR B 65 GLU B 69 1 N CYS B 67 O HIS B 146 SHEET 3 AA9 6 HIS B 38 ILE B 45 1 N VAL B 44 O VAL B 66 SHEET 4 AA9 6 SER B 169 ILE B 179 1 O LEU B 178 N VAL B 43 SHEET 5 AA9 6 GLN B 159 LEU B 163 -1 N ALA B 162 O GLU B 170 SHEET 6 AA9 6 HIS B 151 GLY B 156 -1 N LYS B 153 O THR B 161 SHEET 1 AB1 5 HIS B 146 ASN B 149 0 SHEET 2 AB1 5 THR B 65 GLU B 69 1 N CYS B 67 O HIS B 146 SHEET 3 AB1 5 HIS B 38 ILE B 45 1 N VAL B 44 O VAL B 66 SHEET 4 AB1 5 SER B 169 ILE B 179 1 O LEU B 178 N VAL B 43 SHEET 5 AB1 5 ILE B 348 ALA B 350 1 O TYR B 349 N ILE B 177 SHEET 1 AB2 2 SER B 183 VAL B 185 0 SHEET 2 AB2 2 ARG B 313 PRO B 315 -1 O ARG B 314 N GLU B 184 SHEET 1 AB3 5 ILE B 198 VAL B 199 0 SHEET 2 AB3 5 VAL B 306 VAL B 309 1 O VAL B 309 N VAL B 199 SHEET 3 AB3 5 ARG B 213 ILE B 217 1 N ILE B 217 O LEU B 308 SHEET 4 AB3 5 ASP B 236 VAL B 240 1 O VAL B 240 N VAL B 216 SHEET 5 AB3 5 LYS B 269 LYS B 271 1 O LYS B 269 N ALA B 239 SHEET 1 AB4 3 THR B 274 THR B 282 0 SHEET 2 AB4 3 ALA B 285 ASP B 292 -1 O LYS B 287 N GLN B 280 SHEET 3 AB4 3 LYS B 299 CYS B 304 -1 O GLU B 300 N VAL B 290 SHEET 1 AB5 5 SER B 389 ILE B 391 0 SHEET 2 AB5 5 GLU B 396 GLY B 401 -1 O VAL B 397 N ILE B 391 SHEET 3 AB5 5 ILE B 448 GLY B 455 -1 O ILE B 453 N GLY B 398 SHEET 4 AB5 5 PHE B 436 ASP B 442 -1 N LEU B 440 O LEU B 449 SHEET 5 AB5 5 TYR B 414 PRO B 420 -1 N GLY B 417 O VAL B 439 SSBOND 1 CYS A 78 CYS A 83 1555 1555 2.08 SSBOND 2 CYS B 78 CYS B 83 1555 1555 2.09 CISPEP 1 HIS A 394 PRO A 395 0 0.97 CISPEP 2 HIS A 485 PRO A 486 0 -3.26 CISPEP 3 HIS B 394 PRO B 395 0 3.60 CISPEP 4 HIS B 485 PRO B 486 0 -8.43 CRYST1 66.914 91.828 143.059 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014945 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010890 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006990 0.00000 CONECT 608 674 CONECT 674 608 CONECT 8212 8278 CONECT 8278 8212 CONECT1517415175151761517715226 CONECT1517515174 CONECT1517615174 CONECT151771517415178 CONECT1517815177151791522715228 CONECT1517915178151801518115229 CONECT151801517915185 CONECT1518115179151821518315230 CONECT151821518115231 CONECT1518315181151841518515232 CONECT151841518315233 CONECT1518515180151831518615234 CONECT15186151851518715195 CONECT15187151861518815235 CONECT151881518715189 CONECT15189151881519015195 CONECT15190151891519115192 CONECT15191151901523615237 CONECT151921519015193 CONECT15193151921519415238 CONECT151941519315195 CONECT15195151861518915194 CONECT151961519715213 CONECT15197151961519815199 CONECT1519815197 CONECT15199151971520015239 CONECT15200151991520115202 CONECT1520115200 CONECT15202152001520315213 CONECT152031520215204 CONECT15204152031520515211 CONECT15205152041520615240 CONECT15206152051520715208 CONECT1520715206152411524215243 CONECT15208152061520915210 CONECT1520915208152441524515246 CONECT15210152081521115247 CONECT15211152041521015212 CONECT15212152111521315214 CONECT15213151961520215212 CONECT1521415212152151524815249 CONECT1521515214152161521715250 CONECT152161521515251 CONECT1521715215152181521915252 CONECT152181521715253 CONECT1521915217152201522115254 CONECT152201521915255 CONECT1522115219152221525615257 CONECT152221522115223 CONECT1522315222152241522515226 CONECT1522415223 CONECT1522515223 CONECT152261517415223 CONECT1522715178 CONECT1522815178 CONECT1522915179 CONECT1523015181 CONECT1523115182 CONECT1523215183 CONECT1523315184 CONECT1523415185 CONECT1523515187 CONECT1523615191 CONECT1523715191 CONECT1523815193 CONECT1523915199 CONECT1524015205 CONECT1524115207 CONECT1524215207 CONECT1524315207 CONECT1524415209 CONECT1524515209 CONECT1524615209 CONECT1524715210 CONECT1524815214 CONECT1524915214 CONECT1525015215 CONECT1525115216 CONECT1525215217 CONECT1525315218 CONECT1525415219 CONECT1525515220 CONECT1525615221 CONECT1525715221 CONECT1525815259152601526115262 CONECT1525915258152631526615267 CONECT1526015258152641526815269 CONECT1526115258152651527015271 CONECT1526215258152721527315274 CONECT152631525915275 CONECT152641526015276 CONECT152651526115277 CONECT1526615259 CONECT1526715259 CONECT1526815260 CONECT1526915260 CONECT1527015261 CONECT1527115261 CONECT1527215262 CONECT1527315262 CONECT1527415262 CONECT1527515263 CONECT1527615264 CONECT1527715265 CONECT1527815279152801528115282 CONECT1527915278152831528615287 CONECT1528015278152841528815289 CONECT1528115278152851529015291 CONECT1528215278152921529315294 CONECT152831527915295 CONECT152841528015296 CONECT152851528115297 CONECT1528615279 CONECT1528715279 CONECT1528815280 CONECT1528915280 CONECT1529015281 CONECT1529115281 CONECT1529215282 CONECT1529315282 CONECT1529415282 CONECT1529515283 CONECT1529615284 CONECT1529715285 CONECT1529815299153001530115350 CONECT1529915298 CONECT1530015298 CONECT153011529815302 CONECT1530215301153031535115352 CONECT1530315302153041530515353 CONECT153041530315309 CONECT1530515303153061530715354 CONECT153061530515355 CONECT1530715305153081530915356 CONECT153081530715357 CONECT1530915304153071531015358 CONECT15310153091531115319 CONECT15311153101531215359 CONECT153121531115313 CONECT15313153121531415319 CONECT15314153131531515316 CONECT15315153141536015361 CONECT153161531415317 CONECT15317153161531815362 CONECT153181531715319 CONECT15319153101531315318 CONECT153201532115337 CONECT15321153201532215323 CONECT1532215321 CONECT15323153211532415363 CONECT15324153231532515326 CONECT1532515324 CONECT15326153241532715337 CONECT153271532615328 CONECT15328153271532915335 CONECT15329153281533015364 CONECT15330153291533115332 CONECT1533115330153651536615367 CONECT15332153301533315334 CONECT1533315332153681536915370 CONECT15334153321533515371 CONECT15335153281533415336 CONECT15336153351533715338 CONECT15337153201532615336 CONECT1533815336153391537215373 CONECT1533915338153401534115374 CONECT153401533915375 CONECT1534115339153421534315376 CONECT153421534115377 CONECT1534315341153441534515378 CONECT153441534315379 CONECT1534515343153461538015381 CONECT153461534515347 CONECT1534715346153481534915350 CONECT1534815347 CONECT1534915347 CONECT153501529815347 CONECT1535115302 CONECT1535215302 CONECT1535315303 CONECT1535415305 CONECT1535515306 CONECT1535615307 CONECT1535715308 CONECT1535815309 CONECT1535915311 CONECT1536015315 CONECT1536115315 CONECT1536215317 CONECT1536315323 CONECT1536415329 CONECT1536515331 CONECT1536615331 CONECT1536715331 CONECT1536815333 CONECT1536915333 CONECT1537015333 CONECT1537115334 CONECT1537215338 CONECT1537315338 CONECT1537415339 CONECT1537515340 CONECT1537615341 CONECT1537715342 CONECT1537815343 CONECT1537915344 CONECT1538015345 CONECT1538115345 MASTER 350 0 4 34 56 0 0 6 8543 2 212 74 END