HEADER OXIDOREDUCTASE 20-MAR-25 9QLC TITLE HIGH DOSE STRUCTURE OF RHYZOPERTHA DOMINICA DIHYDROLIPOYL TITLE 2 DEHYDROGENASE AT 1.08 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROLIPOYL DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.8.1.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHYZOPERTHA DOMINICA; SOURCE 3 ORGANISM_COMMON: LESSER GRAIN BORER; SOURCE 4 ORGANISM_TAXID: 92692; SOURCE 5 GENE: DLD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS OXIDOREDUCTASE, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.RABE VON PAPPENHEIM,K.TITTMANN REVDAT 1 30-SEP-26 9QLC 0 JRNL AUTH F.RABE VON PAPPENHEIM,K.TITTMANN JRNL TITL HIGH DOSE STRUCTURE OF RHYZOPERTHA DOMINICA DIHYDROLIPOYL JRNL TITL 2 DEHYDROGENASE AT 1.08 ANGSTROM RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 74.5 REMARK 3 NUMBER OF REFLECTIONS : 282256 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.127 REMARK 3 R VALUE (WORKING SET) : 0.126 REMARK 3 FREE R VALUE : 0.150 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 14011 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.3900 - 3.3400 1.00 12599 676 0.1312 0.1402 REMARK 3 2 3.3400 - 2.6500 1.00 12255 635 0.1241 0.1460 REMARK 3 3 2.6500 - 2.3100 1.00 12184 621 0.1169 0.1410 REMARK 3 4 2.3100 - 2.1000 1.00 12124 596 0.1081 0.1380 REMARK 3 5 2.1000 - 1.9500 1.00 12080 612 0.1083 0.1384 REMARK 3 6 1.9500 - 1.8400 1.00 12069 637 0.1131 0.1364 REMARK 3 7 1.8400 - 1.7500 1.00 11999 639 0.1133 0.1368 REMARK 3 8 1.7500 - 1.6700 1.00 11985 635 0.1091 0.1349 REMARK 3 9 1.6700 - 1.6000 1.00 12072 604 0.1046 0.1356 REMARK 3 10 1.6000 - 1.5500 1.00 11949 625 0.1029 0.1303 REMARK 3 11 1.5500 - 1.5000 1.00 11997 651 0.1085 0.1420 REMARK 3 12 1.5000 - 1.4600 1.00 11919 618 0.1141 0.1479 REMARK 3 13 1.4600 - 1.4200 1.00 11968 661 0.1238 0.1541 REMARK 3 14 1.4200 - 1.3900 1.00 11999 586 0.1337 0.1745 REMARK 3 15 1.3900 - 1.3500 1.00 11988 636 0.1514 0.1860 REMARK 3 16 1.3500 - 1.3200 1.00 11903 624 0.1545 0.1901 REMARK 3 17 1.3200 - 1.3000 1.00 11934 635 0.1640 0.2150 REMARK 3 18 1.3000 - 1.2700 0.97 11585 602 0.1758 0.2052 REMARK 3 19 1.2700 - 1.2500 0.88 10472 590 0.1991 0.2472 REMARK 3 20 1.2500 - 1.2300 0.77 9179 468 0.1915 0.2306 REMARK 3 21 1.2300 - 1.2100 0.64 7678 394 0.2117 0.2359 REMARK 3 22 1.2100 - 1.1900 0.52 6221 325 0.1962 0.2157 REMARK 3 23 1.1900 - 1.1700 0.44 5330 280 0.2057 0.1987 REMARK 3 24 1.1700 - 1.1600 0.37 4379 234 0.2186 0.2296 REMARK 3 25 1.1600 - 1.1400 0.30 3563 197 0.2237 0.2706 REMARK 3 26 1.1400 - 1.1300 0.21 2558 123 0.2384 0.2381 REMARK 3 27 1.1300 - 1.1100 0.11 1363 53 0.2365 0.3099 REMARK 3 28 1.1100 - 1.1000 0.06 679 37 0.2299 0.1855 REMARK 3 29 1.1000 - 1.0900 0.02 193 16 0.2446 0.3584 REMARK 3 30 1.0900 - 1.0700 0.00 21 1 0.1999 0.7332 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.078 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 9568 REMARK 3 ANGLE : 0.946 13169 REMARK 3 CHIRALITY : 0.080 1460 REMARK 3 PLANARITY : 0.007 1781 REMARK 3 DIHEDRAL : 13.612 3633 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9QLC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1292141081. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.68881 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X CDTE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 282295 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.070 REMARK 200 RESOLUTION RANGE LOW (A) : 56.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 35.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 15.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, MAGNESIUM CHLORIDE, PEG3350, REMARK 280 FORMAMIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.31350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.44800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.90800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.44800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.31350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.90800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 35 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER B 289 OD1 ASP B 301 1.52 REMARK 500 HZ3 LYS A 164 OE2 GLU A 170 1.53 REMARK 500 OE2 GLU B 367 HH TYR B 384 1.56 REMARK 500 HD21 ASN A 149 O HOH A 706 1.56 REMARK 500 HD21 ASN B 244 O HOH B 705 1.60 REMARK 500 O HOH B 1039 O HOH B 1255 1.85 REMARK 500 O HOH A 1159 O HOH A 1326 1.85 REMARK 500 O HOH B 1136 O HOH B 1247 1.92 REMARK 500 O HOH A 1231 O HOH A 1244 2.01 REMARK 500 O HOH B 1286 O HOH B 1289 2.07 REMARK 500 O HOH A 868 O HOH A 1226 2.08 REMARK 500 O HOH A 931 O HOH A 1231 2.10 REMARK 500 O HOH B 1054 O HOH B 1100 2.10 REMARK 500 O HOH A 1179 O HOH A 1316 2.11 REMARK 500 O HOH B 1031 O HOH B 1264 2.13 REMARK 500 O HOH B 706 O HOH B 727 2.13 REMARK 500 O HOH A 733 O HOH A 755 2.14 REMARK 500 O HOH A 860 O HOH A 872 2.16 REMARK 500 O HOH A 985 O HOH A 1283 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1038 O HOH A 1327 3544 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 144 31.73 70.39 REMARK 500 ALA A 180 53.44 -140.43 REMARK 500 GLU A 196 -70.34 -113.91 REMARK 500 ALA A 219 34.84 -98.69 REMARK 500 ASN A 295 78.02 -119.36 REMARK 500 CYS A 310 51.92 -140.85 REMARK 500 THR A 317 25.50 -144.02 REMARK 500 THR A 317 25.19 -141.89 REMARK 500 THR A 343 -175.84 -67.76 REMARK 500 THR A 393 -179.44 -64.71 REMARK 500 THR A 393 -174.73 -64.71 REMARK 500 VAL B 81 24.77 -140.80 REMARK 500 ALA B 180 56.03 -140.69 REMARK 500 ALA B 285 -156.07 -142.06 REMARK 500 CYS B 310 44.13 -147.46 REMARK 500 THR B 317 26.48 -141.59 REMARK 500 THR B 317 29.18 -141.59 REMARK 500 THR B 393 -179.53 -65.71 REMARK 500 ASP B 432 88.27 -151.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1356 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A1357 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A1358 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A1359 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A1360 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH A1361 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH B1288 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B1289 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH B1290 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH B1291 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH B1292 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH B1293 DISTANCE = 7.31 ANGSTROMS REMARK 525 HOH B1294 DISTANCE = 7.81 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 231 OG REMARK 620 2 VAL B 237 N 127.5 REMARK 620 3 GLY B 267 O 103.6 114.5 REMARK 620 4 HOH B 884 O 110.7 105.4 88.4 REMARK 620 N 1 2 3 DBREF 9QLC A 35 507 UNP K7PQ54 K7PQ54_RHYDO 35 507 DBREF 9QLC B 35 507 UNP K7PQ54 K7PQ54_RHYDO 35 507 SEQRES 1 A 473 SER THR THR HIS GLU ALA ASP ILE VAL VAL ILE GLY SER SEQRES 2 A 473 GLY PRO GLY GLY TYR VAL ALA ALA ILE LYS ALA THR GLN SEQRES 3 A 473 LEU GLY PHE LYS THR VAL CYS ILE GLU LYS ASN PRO THR SEQRES 4 A 473 LEU GLY GLY THR CYS LEU ASN VAL GLY CYS ILE PRO SER SEQRES 5 A 473 LYS ALA LEU LEU ASN ASN SER HIS TYR TYR HIS MET ALA SEQRES 6 A 473 HIS SER GLY GLU LEU ALA GLU ARG GLY VAL THR VAL SER SEQRES 7 A 473 ASN VAL GLU LEU ASN LEU ASP LYS LEU MET GLN THR LYS SEQRES 8 A 473 SER ASN ALA VAL LYS ALA LEU THR GLY GLY ILE ALA MET SEQRES 9 A 473 LEU PHE LYS LYS ASN LYS VAL HIS LEU ILE ASN GLY HIS SEQRES 10 A 473 GLY LYS ILE THR GLY ASN ASN GLN VAL THR ALA LEU LYS SEQRES 11 A 473 PRO ASP GLY SER SER GLU VAL VAL ASN THR LYS ASN ILE SEQRES 12 A 473 LEU ILE ALA THR GLY SER GLU VAL THR PRO PHE GLN GLY SEQRES 13 A 473 ILE PRO ILE ASP GLU GLU THR ILE VAL SER SER THR GLY SEQRES 14 A 473 ALA LEU SER LEU LYS GLN VAL PRO LYS ARG LEU VAL VAL SEQRES 15 A 473 ILE GLY ALA GLY VAL ILE GLY LEU GLU LEU GLY SER VAL SEQRES 16 A 473 TRP SER ARG LEU GLY ALA ASP VAL THR ALA VAL GLU PHE SEQRES 17 A 473 LEU ASN SER ILE GLY GLY ALA GLY ILE ASP GLY GLU VAL SEQRES 18 A 473 ALA GLN THR PHE GLN LYS VAL LEU THR LYS GLN GLY LEU SEQRES 19 A 473 LYS PHE LYS LEU GLY THR LYS VAL THR SER ALA GLN LYS SEQRES 20 A 473 THR GLY GLY ALA ILE LYS VAL SER VAL GLU ASP VAL LYS SEQRES 21 A 473 ASN PRO GLU LYS LYS GLU ASP LEU GLU CYS ASP VAL LEU SEQRES 22 A 473 LEU VAL CYS VAL GLY ARG ARG PRO TYR THR GLU ASN LEU SEQRES 23 A 473 GLY LEU GLU GLU MET GLY ILE GLU ARG ASP GLN ARG GLY SEQRES 24 A 473 CYS ILE PRO VAL ASN SER HIS PHE GLN THR VAL ILE PRO SEQRES 25 A 473 ASN ILE TYR ALA ILE GLY ASP CYS ILE HIS GLY PRO MET SEQRES 26 A 473 LEU ALA HIS LYS ALA GLU ASP GLU GLY ILE ILE CYS VAL SEQRES 27 A 473 GLU GLY ILE LYS GLY GLY PRO VAL HIS ILE ASP TYR ASN SEQRES 28 A 473 CYS VAL PRO SER VAL ILE TYR THR HIS PRO GLU VAL GLY SEQRES 29 A 473 TRP VAL GLY LYS THR GLU GLU ASP LEU LYS SER GLU GLY SEQRES 30 A 473 VAL ASN TYR LYS VAL GLY LYS PHE PRO PHE LEU ALA ASN SEQRES 31 A 473 SER ARG ALA LYS THR ASN ASN ASP THR ASP GLY PHE VAL SEQRES 32 A 473 LYS VAL LEU SER ASP LYS ASN THR ASP ARG ILE LEU GLY SEQRES 33 A 473 THR HIS ILE ILE GLY PRO MET ALA GLY GLU LEU ILE ASN SEQRES 34 A 473 GLU ALA VAL LEU ALA GLN GLU TYR GLY ALA SER SER GLU SEQRES 35 A 473 ASP VAL ALA ARG VAL CYS HIS ALA HIS PRO THR CYS SER SEQRES 36 A 473 GLU ALA LEU ARG GLU ALA ASN LEU ALA ALA TYR PHE GLY SEQRES 37 A 473 LYS PRO ILE ASN PHE SEQRES 1 B 473 SER THR THR HIS GLU ALA ASP ILE VAL VAL ILE GLY SER SEQRES 2 B 473 GLY PRO GLY GLY TYR VAL ALA ALA ILE LYS ALA THR GLN SEQRES 3 B 473 LEU GLY PHE LYS THR VAL CYS ILE GLU LYS ASN PRO THR SEQRES 4 B 473 LEU GLY GLY THR CYS LEU ASN VAL GLY CYS ILE PRO SER SEQRES 5 B 473 LYS ALA LEU LEU ASN ASN SER HIS TYR TYR HIS MET ALA SEQRES 6 B 473 HIS SER GLY GLU LEU ALA GLU ARG GLY VAL THR VAL SER SEQRES 7 B 473 ASN VAL GLU LEU ASN LEU ASP LYS LEU MET GLN THR LYS SEQRES 8 B 473 SER ASN ALA VAL LYS ALA LEU THR GLY GLY ILE ALA MET SEQRES 9 B 473 LEU PHE LYS LYS ASN LYS VAL HIS LEU ILE ASN GLY HIS SEQRES 10 B 473 GLY LYS ILE THR GLY ASN ASN GLN VAL THR ALA LEU LYS SEQRES 11 B 473 PRO ASP GLY SER SER GLU VAL VAL ASN THR LYS ASN ILE SEQRES 12 B 473 LEU ILE ALA THR GLY SER GLU VAL THR PRO PHE GLN GLY SEQRES 13 B 473 ILE PRO ILE ASP GLU GLU THR ILE VAL SER SER THR GLY SEQRES 14 B 473 ALA LEU SER LEU LYS GLN VAL PRO LYS ARG LEU VAL VAL SEQRES 15 B 473 ILE GLY ALA GLY VAL ILE GLY LEU GLU LEU GLY SER VAL SEQRES 16 B 473 TRP SER ARG LEU GLY ALA ASP VAL THR ALA VAL GLU PHE SEQRES 17 B 473 LEU ASN SER ILE GLY GLY ALA GLY ILE ASP GLY GLU VAL SEQRES 18 B 473 ALA GLN THR PHE GLN LYS VAL LEU THR LYS GLN GLY LEU SEQRES 19 B 473 LYS PHE LYS LEU GLY THR LYS VAL THR SER ALA GLN LYS SEQRES 20 B 473 THR GLY GLY ALA ILE LYS VAL SER VAL GLU ASP VAL LYS SEQRES 21 B 473 ASN PRO GLU LYS LYS GLU ASP LEU GLU CYS ASP VAL LEU SEQRES 22 B 473 LEU VAL CYS VAL GLY ARG ARG PRO TYR THR GLU ASN LEU SEQRES 23 B 473 GLY LEU GLU GLU MET GLY ILE GLU ARG ASP GLN ARG GLY SEQRES 24 B 473 CYS ILE PRO VAL ASN SER HIS PHE GLN THR VAL ILE PRO SEQRES 25 B 473 ASN ILE TYR ALA ILE GLY ASP CYS ILE HIS GLY PRO MET SEQRES 26 B 473 LEU ALA HIS LYS ALA GLU ASP GLU GLY ILE ILE CYS VAL SEQRES 27 B 473 GLU GLY ILE LYS GLY GLY PRO VAL HIS ILE ASP TYR ASN SEQRES 28 B 473 CYS VAL PRO SER VAL ILE TYR THR HIS PRO GLU VAL GLY SEQRES 29 B 473 TRP VAL GLY LYS THR GLU GLU ASP LEU LYS SER GLU GLY SEQRES 30 B 473 VAL ASN TYR LYS VAL GLY LYS PHE PRO PHE LEU ALA ASN SEQRES 31 B 473 SER ARG ALA LYS THR ASN ASN ASP THR ASP GLY PHE VAL SEQRES 32 B 473 LYS VAL LEU SER ASP LYS ASN THR ASP ARG ILE LEU GLY SEQRES 33 B 473 THR HIS ILE ILE GLY PRO MET ALA GLY GLU LEU ILE ASN SEQRES 34 B 473 GLU ALA VAL LEU ALA GLN GLU TYR GLY ALA SER SER GLU SEQRES 35 B 473 ASP VAL ALA ARG VAL CYS HIS ALA HIS PRO THR CYS SER SEQRES 36 B 473 GLU ALA LEU ARG GLU ALA ASN LEU ALA ALA TYR PHE GLY SEQRES 37 B 473 LYS PRO ILE ASN PHE HET FAD A 601 84 HET FAD B 601 84 HET MG B 602 1 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM MG MAGNESIUM ION FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 MG MG 2+ FORMUL 6 HOH *1255(H2 O) HELIX 1 AA1 GLY A 48 LEU A 61 1 14 HELIX 2 AA2 GLY A 75 GLY A 82 1 8 HELIX 3 AA3 GLY A 82 SER A 101 1 20 HELIX 4 AA4 GLY A 102 ARG A 107 1 6 HELIX 5 AA5 ASN A 117 LYS A 144 1 28 HELIX 6 AA6 SER A 200 LEU A 205 1 6 HELIX 7 AA7 GLY A 220 LEU A 233 1 14 HELIX 8 AA8 ASP A 252 GLN A 266 1 15 HELIX 9 AA9 GLY A 352 ILE A 355 5 4 HELIX 10 AB1 LEU A 360 GLY A 377 1 18 HELIX 11 AB2 ASP A 383 VAL A 387 5 5 HELIX 12 AB3 THR A 403 GLY A 411 1 9 HELIX 13 AB4 ASN A 424 ASN A 431 1 8 HELIX 14 AB5 MET A 457 TYR A 471 1 15 HELIX 15 AB6 SER A 474 ARG A 480 1 7 HELIX 16 AB7 SER A 489 GLY A 502 1 14 HELIX 17 AB8 GLY B 48 LEU B 61 1 14 HELIX 18 AB9 GLY B 75 GLY B 82 1 8 HELIX 19 AC1 GLY B 82 SER B 101 1 20 HELIX 20 AC2 LEU B 104 ARG B 107 5 4 HELIX 21 AC3 ASN B 117 LYS B 144 1 28 HELIX 22 AC4 SER B 200 LEU B 205 1 6 HELIX 23 AC5 GLY B 220 LEU B 233 1 14 HELIX 24 AC6 ASP B 252 GLN B 266 1 15 HELIX 25 AC7 GLY B 321 GLY B 326 1 6 HELIX 26 AC8 GLY B 352 ILE B 355 5 4 HELIX 27 AC9 LEU B 360 GLY B 377 1 18 HELIX 28 AD1 ASP B 383 VAL B 387 5 5 HELIX 29 AD2 THR B 403 GLY B 411 1 9 HELIX 30 AD3 ASN B 424 ASN B 430 1 7 HELIX 31 AD4 MET B 457 TYR B 471 1 15 HELIX 32 AD5 SER B 474 ARG B 480 1 7 HELIX 33 AD6 CYS B 488 GLY B 502 1 15 SHEET 1 AA1 6 HIS A 146 ASN A 149 0 SHEET 2 AA1 6 THR A 65 GLU A 69 1 N CYS A 67 O ILE A 148 SHEET 3 AA1 6 THR A 37 ILE A 45 1 N VAL A 44 O VAL A 66 SHEET 4 AA1 6 SER A 169 ILE A 179 1 O LEU A 178 N VAL A 43 SHEET 5 AA1 6 GLN A 159 LEU A 163 -1 N ALA A 162 O GLU A 170 SHEET 6 AA1 6 HIS A 151 GLY A 156 -1 N LYS A 153 O THR A 161 SHEET 1 AA2 5 HIS A 146 ASN A 149 0 SHEET 2 AA2 5 THR A 65 GLU A 69 1 N CYS A 67 O ILE A 148 SHEET 3 AA2 5 THR A 37 ILE A 45 1 N VAL A 44 O VAL A 66 SHEET 4 AA2 5 SER A 169 ILE A 179 1 O LEU A 178 N VAL A 43 SHEET 5 AA2 5 ILE A 348 ALA A 350 1 O TYR A 349 N ILE A 179 SHEET 1 AA3 2 VAL A 109 SER A 112 0 SHEET 2 AA3 2 ASN B 113 LEU B 116 -1 O GLU B 115 N THR A 110 SHEET 1 AA4 2 GLU A 115 LEU A 116 0 SHEET 2 AA4 2 VAL B 109 THR B 110 -1 O THR B 110 N GLU A 115 SHEET 1 AA5 2 SER A 183 VAL A 185 0 SHEET 2 AA5 2 ARG A 313 PRO A 315 -1 O ARG A 314 N GLU A 184 SHEET 1 AA6 5 ILE A 198 VAL A 199 0 SHEET 2 AA6 5 VAL A 306 VAL A 309 1 O VAL A 309 N VAL A 199 SHEET 3 AA6 5 ARG A 213 ILE A 217 1 N ILE A 217 O LEU A 308 SHEET 4 AA6 5 ASP A 236 VAL A 240 1 O VAL A 240 N VAL A 216 SHEET 5 AA6 5 LYS A 269 LYS A 271 1 O LYS A 269 N ALA A 239 SHEET 1 AA7 3 THR A 274 THR A 282 0 SHEET 2 AA7 3 ALA A 285 ASP A 292 -1 O LYS A 287 N GLN A 280 SHEET 3 AA7 3 LYS A 299 CYS A 304 -1 O LEU A 302 N VAL A 288 SHEET 1 AA8 5 SER A 389 ILE A 391 0 SHEET 2 AA8 5 GLU A 396 GLY A 401 -1 O VAL A 397 N ILE A 391 SHEET 3 AA8 5 ILE A 448 GLY A 455 -1 O ILE A 453 N GLY A 398 SHEET 4 AA8 5 PHE A 436 ASP A 442 -1 N LEU A 440 O LEU A 449 SHEET 5 AA8 5 TYR A 414 PRO A 420 -1 N LYS A 415 O SER A 441 SHEET 1 AA9 6 HIS B 146 ASN B 149 0 SHEET 2 AA9 6 THR B 65 GLU B 69 1 N CYS B 67 O HIS B 146 SHEET 3 AA9 6 THR B 37 ILE B 45 1 N VAL B 44 O VAL B 66 SHEET 4 AA9 6 SER B 169 ILE B 179 1 O LEU B 178 N VAL B 43 SHEET 5 AA9 6 GLN B 159 LEU B 163 -1 N ALA B 162 O GLU B 170 SHEET 6 AA9 6 HIS B 151 GLY B 156 -1 N LYS B 153 O THR B 161 SHEET 1 AB1 5 HIS B 146 ASN B 149 0 SHEET 2 AB1 5 THR B 65 GLU B 69 1 N CYS B 67 O HIS B 146 SHEET 3 AB1 5 THR B 37 ILE B 45 1 N VAL B 44 O VAL B 66 SHEET 4 AB1 5 SER B 169 ILE B 179 1 O LEU B 178 N VAL B 43 SHEET 5 AB1 5 ILE B 348 ALA B 350 1 O TYR B 349 N ILE B 177 SHEET 1 AB2 2 SER B 183 VAL B 185 0 SHEET 2 AB2 2 ARG B 313 PRO B 315 -1 O ARG B 314 N GLU B 184 SHEET 1 AB3 5 ILE B 198 VAL B 199 0 SHEET 2 AB3 5 VAL B 306 VAL B 309 1 O VAL B 309 N VAL B 199 SHEET 3 AB3 5 ARG B 213 ILE B 217 1 N ILE B 217 O LEU B 308 SHEET 4 AB3 5 ASP B 236 VAL B 240 1 O VAL B 240 N VAL B 216 SHEET 5 AB3 5 LYS B 269 LYS B 271 1 O LYS B 269 N ALA B 239 SHEET 1 AB4 3 THR B 274 THR B 282 0 SHEET 2 AB4 3 ALA B 285 ASP B 292 -1 O GLU B 291 N LYS B 275 SHEET 3 AB4 3 LYS B 299 CYS B 304 -1 O LEU B 302 N VAL B 288 SHEET 1 AB5 5 SER B 389 ILE B 391 0 SHEET 2 AB5 5 GLU B 396 GLY B 401 -1 O VAL B 397 N ILE B 391 SHEET 3 AB5 5 ILE B 448 GLY B 455 -1 O ILE B 453 N GLY B 398 SHEET 4 AB5 5 PHE B 436 ASP B 442 -1 N LEU B 440 O LEU B 449 SHEET 5 AB5 5 TYR B 414 PRO B 420 -1 N GLY B 417 O VAL B 439 SSBOND 1 CYS A 78 CYS A 83 1555 1555 2.01 SSBOND 2 CYS B 78 CYS B 83 1555 1555 2.02 LINK OG SER B 231 MG MG B 602 1555 1555 2.81 LINK N VAL B 237 MG MG B 602 1555 1555 2.98 LINK O GLY B 267 MG MG B 602 1555 1555 2.96 LINK MG MG B 602 O HOH B 884 1555 1555 2.81 CISPEP 1 HIS A 394 PRO A 395 0 -2.57 CISPEP 2 HIS A 394 PRO A 395 0 11.11 CISPEP 3 HIS A 485 PRO A 486 0 -2.07 CISPEP 4 HIS B 394 PRO B 395 0 4.98 CISPEP 5 HIS B 485 PRO B 486 0 -9.05 CRYST1 66.627 91.816 142.896 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015009 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010891 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006998 0.00000 CONECT 674 770 CONECT 770 674 CONECT 991010006 CONECT10006 9910 CONECT1301218596 CONECT1310218596 CONECT1368918596 CONECT1842818429184301843118480 CONECT1842918428 CONECT1843018428 CONECT184311842818432 CONECT1843218431184331848118482 CONECT1843318432184341843518483 CONECT184341843318439 CONECT1843518433184361843718484 CONECT184361843518485 CONECT1843718435184381843918486 CONECT184381843718487 CONECT1843918434184371844018488 CONECT18440184391844118449 CONECT18441184401844218489 CONECT184421844118443 CONECT18443184421844418449 CONECT18444184431844518446 CONECT18445184441849018491 CONECT184461844418447 CONECT18447184461844818492 CONECT184481844718449 CONECT18449184401844318448 CONECT184501845118467 CONECT18451184501845218453 CONECT1845218451 CONECT18453184511845418493 CONECT18454184531845518456 CONECT1845518454 CONECT18456184541845718467 CONECT184571845618458 CONECT18458184571845918465 CONECT18459184581846018494 CONECT18460184591846118462 CONECT1846118460184951849618497 CONECT18462184601846318464 CONECT1846318462184981849918500 CONECT18464184621846518501 CONECT18465184581846418466 CONECT18466184651846718468 CONECT18467184501845618466 CONECT1846818466184691850218503 CONECT1846918468184701847118504 CONECT184701846918505 CONECT1847118469184721847318506 CONECT184721847118507 CONECT1847318471184741847518508 CONECT184741847318509 CONECT1847518473184761851018511 CONECT184761847518477 CONECT1847718476184781847918480 CONECT1847818477 CONECT1847918477 CONECT184801842818477 CONECT1848118432 CONECT1848218432 CONECT1848318433 CONECT1848418435 CONECT1848518436 CONECT1848618437 CONECT1848718438 CONECT1848818439 CONECT1848918441 CONECT1849018445 CONECT1849118445 CONECT1849218447 CONECT1849318453 CONECT1849418459 CONECT1849518461 CONECT1849618461 CONECT1849718461 CONECT1849818463 CONECT1849918463 CONECT1850018463 CONECT1850118464 CONECT1850218468 CONECT1850318468 CONECT1850418469 CONECT1850518470 CONECT1850618471 CONECT1850718472 CONECT1850818473 CONECT1850918474 CONECT1851018475 CONECT1851118475 CONECT1851218513185141851518564 CONECT1851318512 CONECT1851418512 CONECT185151851218516 CONECT1851618515185171856518566 CONECT1851718516185181851918567 CONECT185181851718523 CONECT1851918517185201852118568 CONECT185201851918569 CONECT1852118519185221852318570 CONECT185221852118571 CONECT1852318518185211852418572 CONECT18524185231852518533 CONECT18525185241852618573 CONECT185261852518527 CONECT18527185261852818533 CONECT18528185271852918530 CONECT18529185281857418575 CONECT185301852818531 CONECT18531185301853218576 CONECT185321853118533 CONECT18533185241852718532 CONECT185341853518551 CONECT18535185341853618537 CONECT1853618535 CONECT18537185351853818577 CONECT18538185371853918540 CONECT1853918538 CONECT18540185381854118551 CONECT185411854018542 CONECT18542185411854318549 CONECT18543185421854418578 CONECT18544185431854518546 CONECT1854518544185791858018581 CONECT18546185441854718548 CONECT1854718546185821858318584 CONECT18548185461854918585 CONECT18549185421854818550 CONECT18550185491855118552 CONECT18551185341854018550 CONECT1855218550185531858618587 CONECT1855318552185541855518588 CONECT185541855318589 CONECT1855518553185561855718590 CONECT185561855518591 CONECT1855718555185581855918592 CONECT185581855718593 CONECT1855918557185601859418595 CONECT185601855918561 CONECT1856118560185621856318564 CONECT1856218561 CONECT1856318561 CONECT185641851218561 CONECT1856518516 CONECT1856618516 CONECT1856718517 CONECT1856818519 CONECT1856918520 CONECT1857018521 CONECT1857118522 CONECT1857218523 CONECT1857318525 CONECT1857418529 CONECT1857518529 CONECT1857618531 CONECT1857718537 CONECT1857818543 CONECT1857918545 CONECT1858018545 CONECT1858118545 CONECT1858218547 CONECT1858318547 CONECT1858418547 CONECT1858518548 CONECT1858618552 CONECT1858718552 CONECT1858818553 CONECT1858918554 CONECT1859018555 CONECT1859118556 CONECT1859218557 CONECT1859318558 CONECT1859418559 CONECT1859518559 CONECT1859613012131021368919462 CONECT1946218596 MASTER 350 0 3 33 56 0 0 6 8418 2 177 74 END