HEADER TRANSCRIPTION 21-MAR-25 9QLT TITLE CRYSTAL STRUCTURE OF DIMERIC APO-D154A-FNR OF A. FISCHERI COMPND MOL_ID: 1; COMPND 2 MOLECULE: FNR TYPE REGULATOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRANSCRIPTIONAL REGULATOR FNR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALIIVIBRIO FISCHERI; SOURCE 3 ORGANISM_TAXID: 668; SOURCE 4 GENE: FNR, AFI02NITE_10170, GNP77_02800, GNP88_12135; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS GENE REGULATION, IRON-SULFUR CLUSTER, OXYGEN SENSOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.VOLBEDA,J.C.FONTECILLA-CAMPS REVDAT 1 08-APR-26 9QLT 0 JRNL AUTH A.VOLBEDA,J.C.FONTECILLA-CAMPS,R.ROHAC,E.DE ROSNY, JRNL AUTH 2 C.DARNAULT,P.AMARA,F.CHENAVIER JRNL TITL CRYSTAL STRUCTURE OF DIMERIC APO-D154A-FNR OF A. FISCHERI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.C.CRACK,P.AMARA,E.DE ROSNY,C.DARNAULT,M.R.STAPLETON, REMARK 1 AUTH 2 J.GREEN,A.VOLBEDA,J.FONTECILLA-CAMPS,N.LE BRUN REMARK 1 TITL PROBING THE REACTIVITY OF [4FE-4S] FUMARATE AND NITRATE REMARK 1 TITL 2 REDUCTION (FNR) REGULATOR WITH O2 AND NO: INCREASED O2 REMARK 1 TITL 3 RESISTANCE AND RELATIVE SPECIFICITY FOR NO OF THE [4FE-4S] REMARK 1 TITL 4 L28H FNR CLUSTER REMARK 1 REF INORGANICS V.(12) 450 2023 REMARK 1 REFN ESSN 2304-6740 REMARK 1 DOI 10.3390/INORGANICS11120450 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.VOLBEDA,Y.NICOLET,J.FONTECILLA-CAMPS REMARK 1 TITL FUMARATE AND NITRATE REDUCTION REGULATOR (FNR) REMARK 1 REF ENCYCLOPEDIA OF INORGANIC 2017 REMARK 1 REF 2 AND BIOINORGANIC CHEMISTRY REMARK 1 DOI 10.1002/9781119951438.EIBC2504 REMARK 1 REFERENCE 3 REMARK 1 AUTH A.VOLBEDA,C.DARNAULT,O.RENOUX,Y.NICOLET,J.FONTECILLA-CAMPS REMARK 1 TITL THE CRYSTAL STRUCTURE OF THE GLOBAL ANAEROBIC REMARK 1 TITL 2 TRANSCRIPTIONAL REGULATOR FNR EXPLAINS ITS EXTREMELY REMARK 1 TITL 3 FINE-TUNED MONOMER-DIMER EQUILIBRIUM REMARK 1 REF SCI ADV 2015 REMARK 1 REFN ESSN 2375-2548 REMARK 1 PMID 26665177 REMARK 1 DOI 10.1126/SCIADV.1501086 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.310 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 12041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.440 REMARK 3 FREE R VALUE TEST SET COUNT : 535 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.4500 - 3.8100 1.00 3029 130 0.1916 0.1935 REMARK 3 2 3.8100 - 3.0200 0.99 2837 141 0.2121 0.2130 REMARK 3 3 3.0200 - 2.6400 1.00 2840 123 0.2738 0.3408 REMARK 3 4 2.6400 - 2.4000 1.00 2800 141 0.3451 0.3562 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.409 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.106 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1681 REMARK 3 ANGLE : 1.187 2266 REMARK 3 CHIRALITY : 0.051 254 REMARK 3 PLANARITY : 0.006 275 REMARK 3 DIHEDRAL : 17.799 654 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5311 -23.7902 -26.1886 REMARK 3 T TENSOR REMARK 3 T11: 0.6462 T22: 0.7240 REMARK 3 T33: 0.7497 T12: 0.0448 REMARK 3 T13: -0.0950 T23: -0.2265 REMARK 3 L TENSOR REMARK 3 L11: 2.8305 L22: 5.4538 REMARK 3 L33: 5.5419 L12: -1.0168 REMARK 3 L13: 0.9831 L23: -0.7090 REMARK 3 S TENSOR REMARK 3 S11: -0.2920 S12: -1.0166 S13: 0.9443 REMARK 3 S21: 0.8032 S22: 0.1087 S23: 0.0930 REMARK 3 S31: -0.8828 S32: -0.0813 S33: 0.2624 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7841 -37.2979 -20.2337 REMARK 3 T TENSOR REMARK 3 T11: 0.5957 T22: 1.1168 REMARK 3 T33: 0.5411 T12: -0.0346 REMARK 3 T13: 0.1230 T23: -0.1201 REMARK 3 L TENSOR REMARK 3 L11: 2.6449 L22: 1.1005 REMARK 3 L33: 4.6917 L12: -0.5122 REMARK 3 L13: -0.7271 L23: 1.3768 REMARK 3 S TENSOR REMARK 3 S11: -0.0471 S12: -1.2705 S13: 0.2435 REMARK 3 S21: 0.5719 S22: -0.0773 S23: 0.2078 REMARK 3 S31: 0.3872 S32: -0.7651 S33: -0.0252 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.6481 -38.7319 -39.3448 REMARK 3 T TENSOR REMARK 3 T11: 0.4177 T22: 0.4525 REMARK 3 T33: 0.4273 T12: -0.0007 REMARK 3 T13: -0.0095 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 12.3604 L22: 8.4278 REMARK 3 L33: 2.6318 L12: 1.3267 REMARK 3 L13: 0.9620 L23: 1.1992 REMARK 3 S TENSOR REMARK 3 S11: -0.3704 S12: -0.1074 S13: -0.0538 REMARK 3 S21: 0.1125 S22: 0.0524 S23: 0.3392 REMARK 3 S31: 0.0904 S32: -0.0392 S33: 0.2565 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9QLT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1292146414. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12049 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 47.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.70500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, HEPES, ANAEROBIC, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 37.42500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 37.42500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 104.31500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 37.42500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 37.42500 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 104.31500 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 37.42500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 37.42500 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 104.31500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 37.42500 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 37.42500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 104.31500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 37.42500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 37.42500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 104.31500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 37.42500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 37.42500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 104.31500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 37.42500 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 37.42500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 104.31500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 37.42500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 37.42500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 104.31500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -272.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -74.85000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 418 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 429 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 TRP A -7 REMARK 465 SER A -6 REMARK 465 HIS A -5 REMARK 465 PRO A -4 REMARK 465 GLN A -3 REMARK 465 PHE A -2 REMARK 465 GLU A -1 REMARK 465 LYS A 0 REMARK 465 ALA A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 ASP A 4 REMARK 465 ASN A 5 REMARK 465 SER A 6 REMARK 465 ALA A 7 REMARK 465 ASN A 8 REMARK 465 LYS A 9 REMARK 465 ARG A 10 REMARK 465 ILE A 11 REMARK 465 GLN A 12 REMARK 465 SER A 13 REMARK 465 GLY A 14 REMARK 465 GLY A 15 REMARK 465 CYS A 16 REMARK 465 ALA A 17 REMARK 465 ILE A 18 REMARK 465 HIS A 19 REMARK 465 CYS A 20 REMARK 465 GLN A 21 REMARK 465 ASP A 22 REMARK 465 CYS A 23 REMARK 465 SER A 24 REMARK 465 ILE A 25 REMARK 465 SER A 26 REMARK 465 GLN A 27 REMARK 465 LEU A 28 REMARK 465 CYS A 29 REMARK 465 ILE A 30 REMARK 465 PRO A 31 REMARK 465 PHE A 32 REMARK 465 THR A 33 REMARK 465 LEU A 34 REMARK 465 ASN A 35 REMARK 465 ASP A 36 REMARK 465 SER A 37 REMARK 465 GLU A 38 REMARK 465 LEU A 39 REMARK 465 ASP A 40 REMARK 465 GLN A 41 REMARK 465 LEU A 42 REMARK 465 ASP A 43 REMARK 465 GLU A 44 REMARK 465 ILE A 45 REMARK 465 ILE A 46 REMARK 465 LYS A 247 REMARK 465 GLU A 248 REMARK 465 ILE A 249 REMARK 465 LYS A 250 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 ARG A 48 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 50 CD CE NZ REMARK 470 ARG A 72 CD NE CZ NH1 NH2 REMARK 470 LYS A 138 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 66 -66.39 -103.55 REMARK 500 ALA A 243 -7.05 -58.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 427 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 428 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A 429 DISTANCE = 8.16 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MES A 312 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 93 ND1 REMARK 620 2 GLU A 150 OE1 108.3 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8QTO RELATED DB: PDB DBREF 9QLT A 3 250 UNP Q70ET4 Q70ET4_ALIFS 3 250 SEQADV 9QLT MET A -8 UNP Q70ET4 INITIATING METHIONINE SEQADV 9QLT TRP A -7 UNP Q70ET4 EXPRESSION TAG SEQADV 9QLT SER A -6 UNP Q70ET4 EXPRESSION TAG SEQADV 9QLT HIS A -5 UNP Q70ET4 EXPRESSION TAG SEQADV 9QLT PRO A -4 UNP Q70ET4 EXPRESSION TAG SEQADV 9QLT GLN A -3 UNP Q70ET4 EXPRESSION TAG SEQADV 9QLT PHE A -2 UNP Q70ET4 EXPRESSION TAG SEQADV 9QLT GLU A -1 UNP Q70ET4 EXPRESSION TAG SEQADV 9QLT LYS A 0 UNP Q70ET4 EXPRESSION TAG SEQADV 9QLT ALA A 1 UNP Q70ET4 EXPRESSION TAG SEQADV 9QLT SER A 2 UNP Q70ET4 EXPRESSION TAG SEQADV 9QLT ALA A 154 UNP Q70ET4 ASP 154 ENGINEERED MUTATION SEQRES 1 A 259 MET TRP SER HIS PRO GLN PHE GLU LYS ALA SER SER ASP SEQRES 2 A 259 ASN SER ALA ASN LYS ARG ILE GLN SER GLY GLY CYS ALA SEQRES 3 A 259 ILE HIS CYS GLN ASP CYS SER ILE SER GLN LEU CYS ILE SEQRES 4 A 259 PRO PHE THR LEU ASN ASP SER GLU LEU ASP GLN LEU ASP SEQRES 5 A 259 GLU ILE ILE GLU ARG LYS LYS PRO ILE GLN LYS GLY GLN SEQRES 6 A 259 GLU LEU PHE LYS ALA GLY ASP GLU LEU LYS CYS LEU TYR SEQRES 7 A 259 ALA ILE ARG SER GLY THR ILE LYS SER TYR THR ILE THR SEQRES 8 A 259 GLU GLN GLY ASP GLU GLN ILE THR ALA PHE HIS LEU ALA SEQRES 9 A 259 GLY ASP LEU VAL GLY PHE ASP ALA ILE THR GLU ALA GLN SEQRES 10 A 259 HIS PRO SER PHE ALA GLN ALA LEU GLU THR SER MET VAL SEQRES 11 A 259 CSS GLU ILE PRO TYR GLU ILE LEU ASP ASP LEU SER GLY SEQRES 12 A 259 LYS MET PRO LYS LEU ARG GLN GLN ILE MET ARG LEU MET SEQRES 13 A 259 SER ASN GLU ILE LYS GLY ALA GLN GLU MET ILE LEU LEU SEQRES 14 A 259 LEU SER LYS LYS ASN ALA GLU GLU ARG LEU ALA ALA PHE SEQRES 15 A 259 LEU TYR ASN LEU SER THR ARG PHE HIS GLN ARG GLY PHE SEQRES 16 A 259 SER PRO ARG GLU PHE ARG LEU THR MET THR ARG GLY ASP SEQRES 17 A 259 ILE GLY ASN TYR LEU GLY LEU THR VAL GLU THR ILE SER SEQRES 18 A 259 ARG LEU LEU GLY ARG PHE GLN LYS THR GLU MET LEU THR SEQRES 19 A 259 VAL LYS GLY LYS TYR ILE THR ILE ASN ASP HIS ASP ALA SEQRES 20 A 259 LEU ALA GLU LEU ALA GLY SER ALA LYS GLU ILE LYS MODRES 9QLT CSS A 122 CYS MODIFIED RESIDUE HET CSS A 122 7 HET FE A 301 1 HET MPD A 302 8 HET MPD A 303 8 HET MPD A 304 8 HET MPD A 305 8 HET MPD A 306 8 HET MES A 307 12 HET MPD A 308 8 HET MPD A 309 8 HET MES A 310 12 HET MPD A 311 8 HET MES A 312 5 HET MPD A 313 8 HET CL A 314 1 HET CL A 315 1 HET CL A 316 1 HET CL A 317 1 HET CL A 318 1 HET CL A 319 1 HETNAM CSS S-MERCAPTOCYSTEINE HETNAM FE FE (III) ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM CL CHLORIDE ION FORMUL 1 CSS C3 H7 N O2 S2 FORMUL 2 FE FE 3+ FORMUL 3 MPD 9(C6 H14 O2) FORMUL 8 MES 3(C6 H13 N O4 S) FORMUL 15 CL 6(CL 1-) FORMUL 21 HOH *29(H2 O) HELIX 1 AA1 GLY A 100 ILE A 104 5 5 HELIX 2 AA2 TYR A 126 MET A 136 1 11 HELIX 3 AA3 MET A 136 LYS A 164 1 29 HELIX 4 AA4 ASN A 165 ARG A 184 1 20 HELIX 5 AA5 THR A 196 GLY A 205 1 10 HELIX 6 AA6 THR A 207 THR A 221 1 15 HELIX 7 AA7 ASP A 235 ALA A 243 1 9 SHEET 1 AA1 4 LYS A 50 ILE A 52 0 SHEET 2 AA1 4 SER A 119 PRO A 125 -1 O SER A 119 N ILE A 52 SHEET 3 AA1 4 CYS A 67 SER A 73 -1 N ARG A 72 O MET A 120 SHEET 4 AA1 4 LEU A 98 VAL A 99 -1 O VAL A 99 N TYR A 69 SHEET 1 AA2 4 GLU A 57 PHE A 59 0 SHEET 2 AA2 4 PHE A 112 ALA A 115 -1 O ALA A 113 N PHE A 59 SHEET 3 AA2 4 ILE A 76 ILE A 81 -1 N TYR A 79 O PHE A 112 SHEET 4 AA2 4 GLU A 87 HIS A 93 -1 O HIS A 93 N ILE A 76 SHEET 1 AA3 3 GLU A 190 ARG A 192 0 SHEET 2 AA3 3 TYR A 230 ILE A 233 -1 O ILE A 231 N PHE A 191 SHEET 3 AA3 3 LEU A 224 LYS A 227 -1 N THR A 225 O THR A 232 LINK C VAL A 121 N CSS A 122 1555 1555 1.33 LINK C CSS A 122 N GLU A 123 1555 1555 1.33 LINK ND1 HIS A 93 FE FE A 301 1555 1555 2.24 LINK OE1 GLU A 150 FE FE A 301 1555 1555 2.72 CRYST1 74.850 74.850 208.630 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013360 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013360 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004793 0.00000 CONECT 356 1568 CONECT 559 564 CONECT 564 559 565 CONECT 565 564 566 569 CONECT 566 565 567 CONECT 567 566 568 CONECT 568 567 CONECT 569 565 570 571 CONECT 570 569 CONECT 571 569 CONECT 797 1568 CONECT 1568 356 797 CONECT 1569 1570 CONECT 1570 1569 1571 1572 1573 CONECT 1571 1570 CONECT 1572 1570 CONECT 1573 1570 1574 CONECT 1574 1573 1575 1576 CONECT 1575 1574 CONECT 1576 1574 CONECT 1577 1578 CONECT 1578 1577 1579 1580 1581 CONECT 1579 1578 CONECT 1580 1578 CONECT 1581 1578 1582 CONECT 1582 1581 1583 1584 CONECT 1583 1582 CONECT 1584 1582 CONECT 1585 1586 CONECT 1586 1585 1587 1588 1589 CONECT 1587 1586 CONECT 1588 1586 CONECT 1589 1586 1590 CONECT 1590 1589 1591 1592 CONECT 1591 1590 CONECT 1592 1590 CONECT 1593 1594 CONECT 1594 1593 1595 1596 1597 CONECT 1595 1594 CONECT 1596 1594 CONECT 1597 1594 1598 CONECT 1598 1597 1599 1600 CONECT 1599 1598 CONECT 1600 1598 CONECT 1601 1602 CONECT 1602 1601 1603 1604 1605 CONECT 1603 1602 CONECT 1604 1602 CONECT 1605 1602 1606 CONECT 1606 1605 1607 1608 CONECT 1607 1606 CONECT 1608 1606 CONECT 1609 1610 1614 CONECT 1610 1609 1611 CONECT 1611 1610 1612 CONECT 1612 1611 1613 1615 CONECT 1613 1612 1614 CONECT 1614 1609 1613 CONECT 1615 1612 1616 CONECT 1616 1615 1617 CONECT 1617 1616 1618 1619 1620 CONECT 1618 1617 CONECT 1619 1617 CONECT 1620 1617 CONECT 1621 1622 CONECT 1622 1621 1623 1624 1625 CONECT 1623 1622 CONECT 1624 1622 CONECT 1625 1622 1626 CONECT 1626 1625 1627 1628 CONECT 1627 1626 CONECT 1628 1626 CONECT 1629 1630 CONECT 1630 1629 1631 1632 1633 CONECT 1631 1630 CONECT 1632 1630 CONECT 1633 1630 1634 CONECT 1634 1633 1635 1636 CONECT 1635 1634 CONECT 1636 1634 CONECT 1637 1638 1642 CONECT 1638 1637 1639 CONECT 1639 1638 1640 CONECT 1640 1639 1641 1643 CONECT 1641 1640 1642 CONECT 1642 1637 1641 CONECT 1643 1640 1644 CONECT 1644 1643 1645 CONECT 1645 1644 1646 1647 1648 CONECT 1646 1645 CONECT 1647 1645 CONECT 1648 1645 CONECT 1649 1650 CONECT 1650 1649 1651 1652 1653 CONECT 1651 1650 CONECT 1652 1650 CONECT 1653 1650 1654 CONECT 1654 1653 1655 1656 CONECT 1655 1654 CONECT 1656 1654 CONECT 1657 1658 CONECT 1658 1657 1659 1660 1661 CONECT 1659 1658 CONECT 1660 1658 CONECT 1661 1658 CONECT 1662 1663 CONECT 1663 1662 1664 1665 1666 CONECT 1664 1663 CONECT 1665 1663 CONECT 1666 1663 1667 CONECT 1667 1666 1668 1669 CONECT 1668 1667 CONECT 1669 1667 MASTER 458 0 20 7 11 0 0 6 1697 1 113 20 END