HEADER TRANSCRIPTION 21-MAR-25 9QLY TITLE CRYSTAL STRUCTURE OF HOLO-D130A-FNR OF A. FISCHERI COMPND MOL_ID: 1; COMPND 2 MOLECULE: FNR TYPE REGULATOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRANSCRIPTIONAL REGULATOR FNR; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALIIVIBRIO FISCHERI; SOURCE 3 ORGANISM_TAXID: 668; SOURCE 4 GENE: FNR, AFI02NITE_10170, GNP77_02800, GNP88_12135; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS GENE REGULATION, IRON-SULFUR CLUSTER, OXYGEN SENSOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.VOLBEDA,J.C.FONTECILLA-CAMPS,R.ROHAC REVDAT 1 08-APR-26 9QLY 0 JRNL AUTH A.VOLBEDA,J.C.FONTECILLA-CAMPS,R.ROHAC,E.DE ROSNY, JRNL AUTH 2 C.DARNAULT,P.AMARA,F.CHENAVIER JRNL TITL CRYSTAL STRUCTURE OF HOLO-D130A-FNR OF A. FISCHERI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.C.CRACK,P.AMARA,E.DE ROSNY,C.DARNAULT,M.R.STAPLETON, REMARK 1 AUTH 2 J.GREEN,A.VOLBEDA,J.FONTECILLA-CAMPS,N.LE BRUN REMARK 1 TITL PROBING THE REACTIVITY OF [4FE-4S] FUMARATE AND NITRATE REMARK 1 TITL 2 REDUCTION (FNR) REGULATOR WITH O2 AND NO: INCREASED O2 REMARK 1 TITL 3 RESISTANCE AND RELATIVE SPECIFICITY FOR NO OF THE [4FE-4S] REMARK 1 TITL 4 L28H FNR CLUSTER REMARK 1 REF INORGANICS V.(12) 450 2023 REMARK 1 REFN ESSN 2304-6740 REMARK 1 DOI 10.3390/INORGANICS11120450 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.VOLBEDA,Y.NICOLET,J.FONTECILLA-CAMPS REMARK 1 TITL FUMARATE AND NITRATE REDUCTION REGULATOR (FNR) REMARK 1 REF ENCYCLOPEDIA OF INORGANIC 2017 REMARK 1 REF 2 AND BIOINORGANIC CHEMISTRY REMARK 1 DOI 10.1002/9781119951438.EIBC2504 REMARK 1 REFERENCE 3 REMARK 1 AUTH A.VOLBEDA,C.DARNAULT,O.RENOUX,Y.NICOLET,J.FONTECILLA-CAMPS REMARK 1 TITL THE CRYSTAL STRUCTURE OF THE GLOBAL ANAEROBIC REMARK 1 TITL 2 TRANSCRIPTIONAL REGULATOR FNR EXPLAINS ITS EXTREMELY REMARK 1 TITL 3 FINE-TUNED MONOMER-DIMER EQUILIBRIUM REMARK 1 REF SCI ADV 2015 REMARK 1 REFN ESSN 2375-2548 REMARK 1 PMID 26665177 REMARK 1 DOI 10.1126/SCIADV.1501086 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.320 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 11178 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.490 REMARK 3 FREE R VALUE TEST SET COUNT : 502 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.0600 - 3.9700 1.00 2822 122 0.1552 0.1948 REMARK 3 2 3.9700 - 3.1500 1.00 2638 130 0.2232 0.2779 REMARK 3 3 3.1500 - 2.7500 1.00 2636 122 0.3038 0.3477 REMARK 3 4 2.7500 - 2.5000 1.00 2580 128 0.3315 0.4356 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.493 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.014 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 90.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 100.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1878 REMARK 3 ANGLE : 0.878 2535 REMARK 3 CHIRALITY : 0.049 290 REMARK 3 PLANARITY : 0.007 323 REMARK 3 DIHEDRAL : 14.877 713 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 17 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.7025 -5.4395 -11.1536 REMARK 3 T TENSOR REMARK 3 T11: 1.2212 T22: 1.8951 REMARK 3 T33: 0.8544 T12: 0.3119 REMARK 3 T13: -0.1784 T23: 0.1308 REMARK 3 L TENSOR REMARK 3 L11: 0.3697 L22: 0.9042 REMARK 3 L33: 0.3537 L12: -0.6868 REMARK 3 L13: -0.2207 L23: 0.2389 REMARK 3 S TENSOR REMARK 3 S11: -0.9331 S12: -1.4477 S13: 0.0451 REMARK 3 S21: 1.3708 S22: 1.2261 S23: -1.1720 REMARK 3 S31: 0.0728 S32: 0.0109 S33: 0.0080 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.9675 -13.5584 -27.5570 REMARK 3 T TENSOR REMARK 3 T11: 0.8207 T22: 0.9184 REMARK 3 T33: 1.0307 T12: 0.0401 REMARK 3 T13: 0.0223 T23: 0.1833 REMARK 3 L TENSOR REMARK 3 L11: 2.8571 L22: 1.9614 REMARK 3 L33: 2.6272 L12: -0.3790 REMARK 3 L13: -2.6077 L23: 0.8963 REMARK 3 S TENSOR REMARK 3 S11: -0.3853 S12: -0.3166 S13: -1.3235 REMARK 3 S21: 0.1250 S22: 0.0680 S23: -0.0620 REMARK 3 S31: 0.4629 S32: -0.0377 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.5082 0.3770 -21.2483 REMARK 3 T TENSOR REMARK 3 T11: 0.6846 T22: 1.1362 REMARK 3 T33: 0.6508 T12: 0.0916 REMARK 3 T13: -0.1225 T23: 0.0301 REMARK 3 L TENSOR REMARK 3 L11: 2.4093 L22: 0.5116 REMARK 3 L33: 1.3304 L12: -1.1145 REMARK 3 L13: 1.0170 L23: -0.0355 REMARK 3 S TENSOR REMARK 3 S11: -0.6136 S12: -0.7518 S13: 0.2465 REMARK 3 S21: 0.0200 S22: 0.1908 S23: -0.2312 REMARK 3 S31: -0.2439 S32: -0.0197 S33: -0.0039 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 248 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4353 1.1735 -42.4683 REMARK 3 T TENSOR REMARK 3 T11: 0.6390 T22: 0.6681 REMARK 3 T33: 0.7072 T12: 0.0165 REMARK 3 T13: -0.0731 T23: 0.0315 REMARK 3 L TENSOR REMARK 3 L11: 6.9681 L22: 4.7605 REMARK 3 L33: 2.5005 L12: -0.9906 REMARK 3 L13: 0.3270 L23: -0.2238 REMARK 3 S TENSOR REMARK 3 S11: 0.0500 S12: 0.0824 S13: 0.2834 REMARK 3 S21: -0.1984 S22: -0.2689 S23: -0.1192 REMARK 3 S31: -0.0297 S32: -0.2689 S33: -0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9QLY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1292146413. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER R 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11187 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 47.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.68300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, MES, DITHIONITE, ANAEROBIC, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 37.56500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 37.56500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 108.19000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 37.56500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 37.56500 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 108.19000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 37.56500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 37.56500 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 108.19000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 37.56500 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 37.56500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 108.19000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 37.56500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 37.56500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 108.19000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 37.56500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 37.56500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 108.19000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 37.56500 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 37.56500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 108.19000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 37.56500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 37.56500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 108.19000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -75.13000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 TRP A -7 REMARK 465 SER A -6 REMARK 465 HIS A -5 REMARK 465 PRO A -4 REMARK 465 GLN A -3 REMARK 465 PHE A -2 REMARK 465 GLU A -1 REMARK 465 LYS A 0 REMARK 465 ALA A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 ASP A 4 REMARK 465 ASN A 5 REMARK 465 SER A 6 REMARK 465 ALA A 7 REMARK 465 ASN A 8 REMARK 465 LYS A 9 REMARK 465 ARG A 10 REMARK 465 ILE A 11 REMARK 465 GLN A 12 REMARK 465 SER A 13 REMARK 465 GLY A 14 REMARK 465 GLY A 15 REMARK 465 CYS A 16 REMARK 465 ILE A 249 REMARK 465 LYS A 250 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 50 CG CD CE NZ REMARK 470 LYS A 247 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 29 -152.22 -86.25 REMARK 500 THR A 33 -24.18 85.99 REMARK 500 ASN A 35 -168.19 -79.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 20 SG REMARK 620 2 SF4 A 301 S2 108.8 REMARK 620 3 SF4 A 301 S3 113.1 103.8 REMARK 620 4 SF4 A 301 S4 120.2 105.5 103.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 23 SG REMARK 620 2 SF4 A 301 S1 117.3 REMARK 620 3 SF4 A 301 S3 117.6 103.2 REMARK 620 4 SF4 A 301 S4 107.7 104.9 104.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 29 SG REMARK 620 2 SF4 A 301 S1 109.2 REMARK 620 3 SF4 A 301 S2 124.4 103.2 REMARK 620 4 SF4 A 301 S4 108.4 104.9 105.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 122 SG REMARK 620 2 SF4 A 301 S1 123.0 REMARK 620 3 SF4 A 301 S2 108.0 103.8 REMARK 620 4 SF4 A 301 S3 112.1 104.0 104.2 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8QTO RELATED DB: PDB DBREF 9QLY A 3 250 UNP Q70ET4 Q70ET4_ALIFS 3 250 SEQADV 9QLY MET A -8 UNP Q70ET4 INITIATING METHIONINE SEQADV 9QLY TRP A -7 UNP Q70ET4 EXPRESSION TAG SEQADV 9QLY SER A -6 UNP Q70ET4 EXPRESSION TAG SEQADV 9QLY HIS A -5 UNP Q70ET4 EXPRESSION TAG SEQADV 9QLY PRO A -4 UNP Q70ET4 EXPRESSION TAG SEQADV 9QLY GLN A -3 UNP Q70ET4 EXPRESSION TAG SEQADV 9QLY PHE A -2 UNP Q70ET4 EXPRESSION TAG SEQADV 9QLY GLU A -1 UNP Q70ET4 EXPRESSION TAG SEQADV 9QLY LYS A 0 UNP Q70ET4 EXPRESSION TAG SEQADV 9QLY ALA A 1 UNP Q70ET4 EXPRESSION TAG SEQADV 9QLY SER A 2 UNP Q70ET4 EXPRESSION TAG SEQADV 9QLY ALA A 130 UNP Q70ET4 ASP 130 ENGINEERED MUTATION SEQRES 1 A 259 MET TRP SER HIS PRO GLN PHE GLU LYS ALA SER SER ASP SEQRES 2 A 259 ASN SER ALA ASN LYS ARG ILE GLN SER GLY GLY CYS ALA SEQRES 3 A 259 ILE HIS CYS GLN ASP CYS SER ILE SER GLN LEU CYS ILE SEQRES 4 A 259 PRO PHE THR LEU ASN ASP SER GLU LEU ASP GLN LEU ASP SEQRES 5 A 259 GLU ILE ILE GLU ARG LYS LYS PRO ILE GLN LYS GLY GLN SEQRES 6 A 259 GLU LEU PHE LYS ALA GLY ASP GLU LEU LYS CYS LEU TYR SEQRES 7 A 259 ALA ILE ARG SER GLY THR ILE LYS SER TYR THR ILE THR SEQRES 8 A 259 GLU GLN GLY ASP GLU GLN ILE THR ALA PHE HIS LEU ALA SEQRES 9 A 259 GLY ASP LEU VAL GLY PHE ASP ALA ILE THR GLU ALA GLN SEQRES 10 A 259 HIS PRO SER PHE ALA GLN ALA LEU GLU THR SER MET VAL SEQRES 11 A 259 CYS GLU ILE PRO TYR GLU ILE LEU ALA ASP LEU SER GLY SEQRES 12 A 259 LYS MET PRO LYS LEU ARG GLN GLN ILE MET ARG LEU MET SEQRES 13 A 259 SER ASN GLU ILE LYS GLY ASP GLN GLU MET ILE LEU LEU SEQRES 14 A 259 LEU SER LYS LYS ASN ALA GLU GLU ARG LEU ALA ALA PHE SEQRES 15 A 259 LEU TYR ASN LEU SER THR ARG PHE HIS GLN ARG GLY PHE SEQRES 16 A 259 SER PRO ARG GLU PHE ARG LEU THR MET THR ARG GLY ASP SEQRES 17 A 259 ILE GLY ASN TYR LEU GLY LEU THR VAL GLU THR ILE SER SEQRES 18 A 259 ARG LEU LEU GLY ARG PHE GLN LYS THR GLU MET LEU THR SEQRES 19 A 259 VAL LYS GLY LYS TYR ILE THR ILE ASN ASP HIS ASP ALA SEQRES 20 A 259 LEU ALA GLU LEU ALA GLY SER ALA LYS GLU ILE LYS HET SF4 A 301 8 HET MPD A 302 8 HET MPD A 303 8 HET CL A 304 1 HET CL A 305 1 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM CL CHLORIDE ION FORMUL 2 SF4 FE4 S4 FORMUL 3 MPD 2(C6 H14 O2) FORMUL 5 CL 2(CL 1-) FORMUL 7 HOH *25(H2 O) HELIX 1 AA1 ASN A 35 ILE A 45 1 11 HELIX 2 AA2 GLY A 100 ILE A 104 5 5 HELIX 3 AA3 TYR A 126 MET A 136 1 11 HELIX 4 AA4 MET A 136 LYS A 164 1 29 HELIX 5 AA5 ASN A 165 ARG A 184 1 20 HELIX 6 AA6 THR A 196 GLY A 205 1 10 HELIX 7 AA7 THR A 207 THR A 221 1 15 HELIX 8 AA8 ASP A 235 GLY A 244 1 10 SHEET 1 AA1 4 GLU A 57 PHE A 59 0 SHEET 2 AA1 4 PHE A 112 ALA A 115 -1 O ALA A 113 N LEU A 58 SHEET 3 AA1 4 ILE A 76 ILE A 81 -1 N TYR A 79 O PHE A 112 SHEET 4 AA1 4 GLU A 87 HIS A 93 -1 O HIS A 93 N ILE A 76 SHEET 1 AA2 3 LEU A 98 VAL A 99 0 SHEET 2 AA2 3 CYS A 67 SER A 73 -1 N TYR A 69 O VAL A 99 SHEET 3 AA2 3 MET A 120 PRO A 125 -1 O CYS A 122 N ALA A 70 SHEET 1 AA3 3 GLU A 190 ARG A 192 0 SHEET 2 AA3 3 TYR A 230 ILE A 233 -1 O ILE A 231 N PHE A 191 SHEET 3 AA3 3 LEU A 224 LYS A 227 -1 N THR A 225 O THR A 232 LINK SG CYS A 20 FE1 SF4 A 301 1555 1555 2.26 LINK SG CYS A 23 FE2 SF4 A 301 1555 1555 2.26 LINK SG CYS A 29 FE3 SF4 A 301 1555 1555 2.29 LINK SG CYS A 122 FE4 SF4 A 301 1555 1555 2.26 CRYST1 75.130 75.130 216.380 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013310 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013310 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004621 0.00000 CONECT 29 1828 CONECT 52 1829 CONECT 95 1830 CONECT 816 1831 CONECT 1828 29 1833 1834 1835 CONECT 1829 52 1832 1834 1835 CONECT 1830 95 1832 1833 1835 CONECT 1831 816 1832 1833 1834 CONECT 1832 1829 1830 1831 CONECT 1833 1828 1830 1831 CONECT 1834 1828 1829 1831 CONECT 1835 1828 1829 1830 CONECT 1836 1837 CONECT 1837 1836 1838 1839 1840 CONECT 1838 1837 CONECT 1839 1837 CONECT 1840 1837 1841 CONECT 1841 1840 1842 1843 CONECT 1842 1841 CONECT 1843 1841 CONECT 1844 1845 CONECT 1845 1844 1846 1847 1848 CONECT 1846 1845 CONECT 1847 1845 CONECT 1848 1845 1849 CONECT 1849 1848 1850 1851 CONECT 1850 1849 CONECT 1851 1849 MASTER 434 0 5 8 10 0 0 6 1877 1 28 20 END