HEADER MEMBRANE PROTEIN 22-MAR-25 9QM9 TITLE TMEM55B TANDEM RING-LIKE DOMAINS IN COMPLEX WITH RILPL1 C-TERMINAL TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE 1 PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE 4-PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TYPE 1 PTDINS-4,5-P2 4-PTASE,PTDINS-4,5-P2 4-PTASE I, COMPND 5 TRANSMEMBRANE PROTEIN 55B; COMPND 6 EC: 3.1.3.78; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RILP-LIKE PROTEIN 1; COMPND 11 CHAIN: D; COMPND 12 SYNONYM: RAB-INTERACTING LYSOSOMAL-LIKE PROTEIN 1; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: SYNTHETIC PEPTIDE CORRESPONDING TO THE C-TERMINAL COMPND 15 RESIDUES (391-403) OF HUMAN RILPL1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIP4P1, C14ORF9, TMEM55B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: RILPL1, RLP1; SOURCE 13 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 32630 KEYWDS COMPLEX, PP4P1, LYSOSOME, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.WASCHBUESCH,A.R.KHAN REVDAT 2 04-MAR-26 9QM9 1 JRNL REVDAT 1 20-AUG-25 9QM9 0 JRNL AUTH D.WASCHBUSCH,P.PAL,R.S.NIRUJOGI,M.CAVIN,J.SINGH,D.R.ALESSI, JRNL AUTH 2 A.R.KHAN JRNL TITL STRUCTURAL BASIS FOR BINDING OF RILPL1 TO TMEM55B REVEALS A JRNL TITL 2 LYSOSOMAL PLATFORM FOR ADAPTOR ASSEMBLY THROUGH A CONSERVED JRNL TITL 3 PEPTIDE MOTIF. JRNL REF STRUCTURE V. 34 296 2026 JRNL REFN ISSN 0969-2126 JRNL PMID 41314214 JRNL DOI 10.1016/J.STR.2025.11.003 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.180 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 24054 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2255 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.4400 - 3.9100 1.00 2660 167 0.1615 0.1972 REMARK 3 2 3.9000 - 3.1000 0.99 2683 114 0.1809 0.2320 REMARK 3 3 3.1000 - 2.7100 1.00 2690 147 0.2049 0.2528 REMARK 3 4 2.7100 - 2.4600 1.00 2676 124 0.1943 0.2194 REMARK 3 5 2.4600 - 2.2800 1.00 2714 114 0.1889 0.2285 REMARK 3 6 2.2800 - 2.1500 1.00 2664 174 0.1964 0.2419 REMARK 3 7 2.1500 - 2.0400 1.00 2641 165 0.2026 0.2459 REMARK 3 8 2.0400 - 1.9500 1.00 2669 150 0.2067 0.2849 REMARK 3 9 1.9500 - 1.8800 0.99 2658 118 0.2262 0.2400 REMARK 3 10 1.8800 - 1.8100 1.00 2727 110 0.2480 0.2681 REMARK 3 11 1.8100 - 1.7600 0.99 2696 153 0.2493 0.2727 REMARK 3 12 1.7600 - 1.7100 0.99 2617 143 0.2513 0.2899 REMARK 3 13 1.7100 - 1.6600 1.00 2678 157 0.2663 0.3261 REMARK 3 14 1.6600 - 1.6200 0.99 2650 128 0.3015 0.3213 REMARK 3 15 1.6200 - 1.5800 0.99 2649 148 0.3174 0.3396 REMARK 3 16 1.5800 - 1.5500 0.99 2603 143 0.3245 0.4060 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.185 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.765 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1296 REMARK 3 ANGLE : 1.014 1754 REMARK 3 CHIRALITY : 0.062 202 REMARK 3 PLANARITY : 0.012 227 REMARK 3 DIHEDRAL : 5.745 182 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -24.9941 -2.4836 8.0794 REMARK 3 T TENSOR REMARK 3 T11: 0.1177 T22: 0.1071 REMARK 3 T33: 0.1126 T12: 0.0048 REMARK 3 T13: 0.0058 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 0.9201 L22: 0.5248 REMARK 3 L33: 0.8590 L12: 0.1311 REMARK 3 L13: 0.1009 L23: 0.4418 REMARK 3 S TENSOR REMARK 3 S11: -0.0217 S12: -0.1012 S13: 0.1053 REMARK 3 S21: -0.0021 S22: 0.0207 S23: 0.0046 REMARK 3 S31: -0.0690 S32: 0.0557 S33: -0.0075 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9QM9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1292146565. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUL-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : HORIZONTAL PRE-FOCUS BIMORPH REMARK 200 MIRROR & KB BIMORPH MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24054 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 79.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 2.24200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M KSCN 0.1M TRIS PH 8.5 18% REMARK 280 PEG5000/MME, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.75700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.99600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.22100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.99600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.75700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.22100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 76 REMARK 465 SER A 77 REMARK 465 HIS A 78 REMARK 465 MET A 79 REMARK 465 SER A 80 REMARK 465 PRO A 81 REMARK 465 ASP A 82 REMARK 465 SER A 83 REMARK 465 GLY A 84 REMARK 465 SER A 85 REMARK 465 PRO A 162 REMARK 465 VAL A 163 REMARK 465 HIS A 164 REMARK 465 PRO A 165 REMARK 465 GLY A 166 REMARK 465 GLY B 76 REMARK 465 SER B 77 REMARK 465 HIS B 78 REMARK 465 MET B 79 REMARK 465 SER B 80 REMARK 465 PRO B 81 REMARK 465 ASP B 82 REMARK 465 SER B 83 REMARK 465 GLY B 84 REMARK 465 SER B 85 REMARK 465 GLN D 401 REMARK 465 HIS D 402 REMARK 465 LEU D 403 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 345 O HOH B 351 1.82 REMARK 500 O HOH A 360 O HOH A 363 1.92 REMARK 500 O HOH D 501 O HOH D 505 2.01 REMARK 500 O HOH B 344 O HOH B 349 2.04 REMARK 500 O HOH A 309 O HOH A 315 2.08 REMARK 500 N ALA B 86 O HOH B 301 2.16 REMARK 500 O HOH A 315 O HOH A 329 2.17 REMARK 500 NE ARG B 156 O HOH B 302 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 335 O HOH B 327 4545 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 88 CG - SD - CE ANGL. DEV. = -10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 135 -7.87 99.61 REMARK 500 CYS A 154 -81.27 -107.52 REMARK 500 ASN B 135 1.61 90.48 REMARK 500 CYS B 154 -74.14 -109.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 91 SG REMARK 620 2 CYS A 94 SG 115.2 REMARK 620 3 CYS A 111 SG 109.7 103.1 REMARK 620 4 CYS A 114 SG 101.0 115.8 112.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 132 SG REMARK 620 2 CYS A 134 SG 109.4 REMARK 620 3 CYS A 149 SG 113.0 111.3 REMARK 620 4 CYS A 154 SG 98.2 114.4 110.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 91 SG REMARK 620 2 CYS B 94 SG 112.1 REMARK 620 3 CYS B 111 SG 113.4 99.7 REMARK 620 4 CYS B 114 SG 105.2 115.9 110.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 132 SG REMARK 620 2 CYS B 134 SG 107.3 REMARK 620 3 CYS B 149 SG 113.1 109.3 REMARK 620 4 CYS B 154 SG 101.1 114.9 111.0 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8OQH RELATED DB: PDB REMARK 900 UNCOMPLEXED TMEM55B DBREF 9QM9 A 80 166 UNP Q86T03 PP4P1_HUMAN 73 159 DBREF 9QM9 B 80 166 UNP Q86T03 PP4P1_HUMAN 73 159 DBREF 9QM9 D 391 403 UNP Q5EBL4 RIPL1_HUMAN 391 403 SEQADV 9QM9 GLY A 76 UNP Q86T03 EXPRESSION TAG SEQADV 9QM9 SER A 77 UNP Q86T03 EXPRESSION TAG SEQADV 9QM9 HIS A 78 UNP Q86T03 EXPRESSION TAG SEQADV 9QM9 MET A 79 UNP Q86T03 EXPRESSION TAG SEQADV 9QM9 SER A 136 UNP Q86T03 CYS 129 ENGINEERED MUTATION SEQADV 9QM9 ALA A 140 UNP Q86T03 CYS 133 ENGINEERED MUTATION SEQADV 9QM9 GLY B 76 UNP Q86T03 EXPRESSION TAG SEQADV 9QM9 SER B 77 UNP Q86T03 EXPRESSION TAG SEQADV 9QM9 HIS B 78 UNP Q86T03 EXPRESSION TAG SEQADV 9QM9 MET B 79 UNP Q86T03 EXPRESSION TAG SEQADV 9QM9 SER B 136 UNP Q86T03 CYS 129 ENGINEERED MUTATION SEQADV 9QM9 ALA B 140 UNP Q86T03 CYS 133 ENGINEERED MUTATION SEQRES 1 A 91 GLY SER HIS MET SER PRO ASP SER GLY SER ALA PRO MET SEQRES 2 A 91 ILE THR CYS ARG VAL CYS GLN SER LEU ILE ASN VAL GLU SEQRES 3 A 91 GLY LYS MET HIS GLN HIS VAL VAL LYS CYS GLY VAL CYS SEQRES 4 A 91 ASN GLU ALA THR PRO ILE LYS ASN ALA PRO PRO GLY LYS SEQRES 5 A 91 LYS TYR VAL ARG CYS PRO CYS ASN SER LEU LEU ILE ALA SEQRES 6 A 91 LYS VAL THR SER GLN ARG ILE ALA CYS PRO ARG PRO TYR SEQRES 7 A 91 CYS LYS ARG ILE ILE ASN LEU GLY PRO VAL HIS PRO GLY SEQRES 1 B 91 GLY SER HIS MET SER PRO ASP SER GLY SER ALA PRO MET SEQRES 2 B 91 ILE THR CYS ARG VAL CYS GLN SER LEU ILE ASN VAL GLU SEQRES 3 B 91 GLY LYS MET HIS GLN HIS VAL VAL LYS CYS GLY VAL CYS SEQRES 4 B 91 ASN GLU ALA THR PRO ILE LYS ASN ALA PRO PRO GLY LYS SEQRES 5 B 91 LYS TYR VAL ARG CYS PRO CYS ASN SER LEU LEU ILE ALA SEQRES 6 B 91 LYS VAL THR SER GLN ARG ILE ALA CYS PRO ARG PRO TYR SEQRES 7 B 91 CYS LYS ARG ILE ILE ASN LEU GLY PRO VAL HIS PRO GLY SEQRES 1 D 13 GLY TYR THR GLU GLN GLY GLN GLU ALA LEU GLN HIS LEU HET ZN A 201 1 HET ZN A 202 1 HET ZN B 201 1 HET ZN B 202 1 HETNAM ZN ZINC ION FORMUL 4 ZN 4(ZN 2+) FORMUL 8 HOH *127(H2 O) SHEET 1 AA1 2 MET A 88 THR A 90 0 SHEET 2 AA1 2 LEU A 97 ASN A 99 -1 O ILE A 98 N ILE A 89 SHEET 1 AA2 2 VAL A 108 LYS A 110 0 SHEET 2 AA2 2 ALA A 117 PRO A 119 -1 O THR A 118 N VAL A 109 SHEET 1 AA3 3 LYS A 127 ARG A 131 0 SHEET 2 AA3 3 LEU A 137 LYS A 141 -1 O LEU A 138 N VAL A 130 SHEET 3 AA3 3 GLN D 397 GLU D 398 -1 O GLN D 397 N ILE A 139 SHEET 1 AA4 3 ILE A 157 ASN A 159 0 SHEET 2 AA4 3 SER A 144 ALA A 148 -1 N ILE A 147 O ILE A 158 SHEET 3 AA4 3 TYR D 392 GLN D 395 1 O GLU D 394 N ALA A 148 SHEET 1 AA5 2 MET B 88 THR B 90 0 SHEET 2 AA5 2 LEU B 97 ASN B 99 -1 O ILE B 98 N ILE B 89 SHEET 1 AA6 2 VAL B 108 LYS B 110 0 SHEET 2 AA6 2 ALA B 117 PRO B 119 -1 O THR B 118 N VAL B 109 SHEET 1 AA7 2 LYS B 127 ARG B 131 0 SHEET 2 AA7 2 LEU B 137 LYS B 141 -1 O LEU B 138 N VAL B 130 SHEET 1 AA8 2 ARG B 146 ALA B 148 0 SHEET 2 AA8 2 ILE B 157 ASN B 159 -1 O ILE B 158 N ILE B 147 LINK SG CYS A 91 ZN ZN A 201 1555 1555 2.33 LINK SG CYS A 94 ZN ZN A 201 1555 1555 2.30 LINK SG CYS A 111 ZN ZN A 201 1555 1555 2.35 LINK SG CYS A 114 ZN ZN A 201 1555 1555 2.29 LINK SG CYS A 132 ZN ZN A 202 1555 1555 2.30 LINK SG CYS A 134 ZN ZN A 202 1555 1555 2.33 LINK SG CYS A 149 ZN ZN A 202 1555 1555 2.31 LINK SG CYS A 154 ZN ZN A 202 1555 1555 2.33 LINK SG CYS B 91 ZN ZN B 201 1555 1555 2.36 LINK SG CYS B 94 ZN ZN B 201 1555 1555 2.34 LINK SG CYS B 111 ZN ZN B 201 1555 1555 2.32 LINK SG CYS B 114 ZN ZN B 201 1555 1555 2.28 LINK SG CYS B 132 ZN ZN B 202 1555 1555 2.32 LINK SG CYS B 134 ZN ZN B 202 1555 1555 2.34 LINK SG CYS B 149 ZN ZN B 202 1555 1555 2.33 LINK SG CYS B 154 ZN ZN B 202 1555 1555 2.34 CRYST1 41.514 48.442 79.992 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024088 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020643 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012501 0.00000 CONECT 41 1276 CONECT 65 1276 CONECT 205 1276 CONECT 222 1276 CONECT 360 1277 CONECT 373 1277 CONECT 484 1277 CONECT 527 1277 CONECT 625 1278 CONECT 649 1278 CONECT 783 1278 CONECT 800 1278 CONECT 938 1279 CONECT 951 1279 CONECT 1062 1279 CONECT 1105 1279 CONECT 1276 41 65 205 222 CONECT 1277 360 373 484 527 CONECT 1278 625 649 783 800 CONECT 1279 938 951 1062 1105 MASTER 378 0 4 0 18 0 0 6 1397 3 20 15 END