HEADER ANTIBIOTIC 27-MAR-25 9QPD TITLE APH(2'')-IVA WITH A FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: APH(2'')-ID; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS CASSELIFLAVUS; SOURCE 3 ORGANISM_TAXID: 37734; SOURCE 4 GENE: APH(2'')-ID; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, COMPLEX, ENZYME, ANTIBIOTIC EXPDTA X-RAY DIFFRACTION AUTHOR J.F.GUICHOU,M.GELIN,M.TOMASZCZYK,J.KOWALEWSKI,C.LIONNE REVDAT 1 11-FEB-26 9QPD 0 JRNL AUTH J.KOWALEWSKI,R.DEUTSCHER,M.RICHARDOZ,M.TOMASZCZYK,M.GELIN, JRNL AUTH 2 G.LABESSE,F.HAUSCH,G.D.WRIGHT,C.DUNYACH-REMY,J.F.GUICHOU, JRNL AUTH 3 C.LIONNE JRNL TITL FRAGMENT-BASED DRUG DESIGN OF A BACTERIAL KINASE INHIBITOR JRNL TITL 2 CAPABLE OF INCREASING THE ANTIBIOTIC SENSITIVITY OF CLINICAL JRNL TITL 3 ISOLATES. JRNL REF COMMUN CHEM V. 8 417 2025 JRNL REFN ESSN 2399-3669 JRNL PMID 41310159 JRNL DOI 10.1038/S42004-025-01795-6 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.1 REMARK 3 NUMBER OF REFLECTIONS : 54081 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 2666 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 6.1400 0.88 2780 154 0.1438 0.1718 REMARK 3 2 6.1300 - 4.8700 0.80 2533 148 0.1676 0.2245 REMARK 3 3 4.8700 - 4.2600 0.84 2653 126 0.1379 0.1715 REMARK 3 4 4.2500 - 3.8700 0.84 2654 182 0.1707 0.2101 REMARK 3 5 3.8700 - 3.5900 0.87 2720 139 0.1828 0.2470 REMARK 3 6 3.5900 - 3.3800 0.86 2784 115 0.1854 0.2822 REMARK 3 7 3.3800 - 3.2100 0.87 2763 169 0.2222 0.2776 REMARK 3 8 3.2100 - 3.0700 0.81 2578 116 0.2445 0.3214 REMARK 3 9 3.0700 - 2.9500 0.79 2548 94 0.2513 0.3513 REMARK 3 10 2.9500 - 2.8500 0.84 2661 141 0.2418 0.3046 REMARK 3 11 2.8500 - 2.7600 0.85 2733 116 0.2640 0.3212 REMARK 3 12 2.7600 - 2.6800 0.84 2663 132 0.2729 0.3388 REMARK 3 13 2.6800 - 2.6100 0.84 2707 152 0.2701 0.3026 REMARK 3 14 2.6100 - 2.5500 0.88 2727 142 0.2865 0.3128 REMARK 3 15 2.5500 - 2.4900 0.87 2763 124 0.2939 0.3528 REMARK 3 16 2.4900 - 2.4400 0.87 2803 169 0.2801 0.3330 REMARK 3 17 2.4400 - 2.3900 0.87 2764 152 0.2851 0.3125 REMARK 3 18 2.3900 - 2.3400 0.88 2796 127 0.2988 0.3080 REMARK 3 19 2.3400 - 2.3000 0.88 2785 168 0.3242 0.3480 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4939 REMARK 3 ANGLE : 0.994 6686 REMARK 3 CHIRALITY : 0.054 717 REMARK 3 PLANARITY : 0.009 865 REMARK 3 DIHEDRAL : 6.164 643 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2451 -11.8113 37.6011 REMARK 3 T TENSOR REMARK 3 T11: 0.2461 T22: 0.2988 REMARK 3 T33: 0.5432 T12: -0.0065 REMARK 3 T13: -0.0346 T23: -0.0244 REMARK 3 L TENSOR REMARK 3 L11: 2.1175 L22: 2.2817 REMARK 3 L33: 5.0564 L12: 0.3163 REMARK 3 L13: -1.3919 L23: -1.0808 REMARK 3 S TENSOR REMARK 3 S11: 0.0373 S12: -0.0645 S13: 0.2992 REMARK 3 S21: 0.0779 S22: 0.1461 S23: 0.4921 REMARK 3 S31: -0.0418 S32: -0.1097 S33: -0.1738 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 133 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6891 -2.9791 39.2142 REMARK 3 T TENSOR REMARK 3 T11: 0.5474 T22: 0.3684 REMARK 3 T33: 0.5148 T12: 0.0117 REMARK 3 T13: -0.1627 T23: 0.0467 REMARK 3 L TENSOR REMARK 3 L11: 5.6586 L22: 3.4098 REMARK 3 L33: 3.7964 L12: 0.0623 REMARK 3 L13: 1.2230 L23: -1.0002 REMARK 3 S TENSOR REMARK 3 S11: -0.0945 S12: -0.6149 S13: 0.7913 REMARK 3 S21: 0.4291 S22: -0.2055 S23: -0.7152 REMARK 3 S31: -0.0792 S32: 0.4787 S33: 0.3066 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 182 THROUGH 256 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1344 -9.8328 23.8101 REMARK 3 T TENSOR REMARK 3 T11: 0.3245 T22: 0.2529 REMARK 3 T33: 0.3592 T12: 0.0447 REMARK 3 T13: -0.0409 T23: 0.0325 REMARK 3 L TENSOR REMARK 3 L11: 5.3437 L22: 5.6578 REMARK 3 L33: 2.6478 L12: 2.2350 REMARK 3 L13: -0.1719 L23: -0.0485 REMARK 3 S TENSOR REMARK 3 S11: 0.1032 S12: 0.0844 S13: -0.5712 REMARK 3 S21: -0.3770 S22: -0.0569 S23: -0.3548 REMARK 3 S31: 0.2811 S32: -0.0009 S33: -0.0363 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 257 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9008 -14.0785 36.4973 REMARK 3 T TENSOR REMARK 3 T11: 0.8430 T22: 0.4578 REMARK 3 T33: 0.6765 T12: 0.0543 REMARK 3 T13: -0.0950 T23: 0.0576 REMARK 3 L TENSOR REMARK 3 L11: 3.5932 L22: 3.4878 REMARK 3 L33: 5.0414 L12: -1.1064 REMARK 3 L13: 2.9806 L23: -2.1610 REMARK 3 S TENSOR REMARK 3 S11: 0.2519 S12: -0.2115 S13: -0.5832 REMARK 3 S21: 0.5816 S22: -0.1534 S23: -0.3195 REMARK 3 S31: 1.2328 S32: 0.3417 S33: -0.0379 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.7673 -26.0149 -14.7160 REMARK 3 T TENSOR REMARK 3 T11: 0.6213 T22: 0.4636 REMARK 3 T33: 0.3249 T12: 0.1423 REMARK 3 T13: -0.0949 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 2.3938 L22: 2.8890 REMARK 3 L33: 2.2411 L12: 0.7791 REMARK 3 L13: 1.3084 L23: 0.0195 REMARK 3 S TENSOR REMARK 3 S11: 0.0134 S12: 0.1776 S13: -0.0099 REMARK 3 S21: -1.0081 S22: -0.2540 S23: 0.2436 REMARK 3 S31: -0.2101 S32: -0.2230 S33: 0.2460 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 68 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.6142 -17.0996 -11.9473 REMARK 3 T TENSOR REMARK 3 T11: 0.6335 T22: 0.4113 REMARK 3 T33: 0.4569 T12: 0.0923 REMARK 3 T13: -0.0134 T23: 0.0832 REMARK 3 L TENSOR REMARK 3 L11: 0.0059 L22: 4.7676 REMARK 3 L33: 4.7665 L12: 0.1259 REMARK 3 L13: -0.1971 L23: 1.0969 REMARK 3 S TENSOR REMARK 3 S11: -0.0234 S12: 0.5665 S13: 0.6372 REMARK 3 S21: -1.2950 S22: -0.2073 S23: 0.0998 REMARK 3 S31: -0.6993 S32: -0.0443 S33: 0.2465 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.3152 -21.9584 6.7878 REMARK 3 T TENSOR REMARK 3 T11: 0.2606 T22: 0.2973 REMARK 3 T33: 0.3190 T12: -0.0509 REMARK 3 T13: -0.0223 T23: 0.0590 REMARK 3 L TENSOR REMARK 3 L11: 1.3337 L22: 3.5087 REMARK 3 L33: 2.0293 L12: 0.1377 REMARK 3 L13: -0.2848 L23: -0.5534 REMARK 3 S TENSOR REMARK 3 S11: 0.1823 S12: -0.0278 S13: 0.0382 REMARK 3 S21: 0.2945 S22: -0.2331 S23: -0.0132 REMARK 3 S31: -0.1060 S32: 0.0562 S33: 0.0266 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 226 THROUGH 256 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.6590 -25.6004 12.3444 REMARK 3 T TENSOR REMARK 3 T11: 0.4674 T22: 0.4700 REMARK 3 T33: 0.4644 T12: -0.1155 REMARK 3 T13: -0.0921 T23: 0.1607 REMARK 3 L TENSOR REMARK 3 L11: 4.3830 L22: 4.7528 REMARK 3 L33: 5.5665 L12: -0.8915 REMARK 3 L13: -0.0982 L23: 0.9679 REMARK 3 S TENSOR REMARK 3 S11: 0.2116 S12: -0.3781 S13: -0.1561 REMARK 3 S21: 0.5409 S22: -0.3471 S23: -0.5549 REMARK 3 S31: 0.7241 S32: 0.0095 S33: 0.0906 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 257 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.0233 -28.1823 12.8431 REMARK 3 T TENSOR REMARK 3 T11: 0.4284 T22: 0.4010 REMARK 3 T33: 0.4960 T12: -0.0426 REMARK 3 T13: 0.0882 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 6.4445 L22: 4.0637 REMARK 3 L33: 2.6010 L12: 0.2804 REMARK 3 L13: -0.0959 L23: 0.2930 REMARK 3 S TENSOR REMARK 3 S11: 0.2278 S12: 0.0082 S13: -0.5320 REMARK 3 S21: 0.2196 S22: -0.4144 S23: 0.5159 REMARK 3 S31: 0.3280 S32: -0.0577 S33: 0.1603 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9QPD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1292146688. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9897 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54081 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 53.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG3350, 50-90 MM AMMONIUM REMARK 280 CITRATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.27650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 ILE B 298 REMARK 465 LYS B 299 REMARK 465 ILE B 300 REMARK 465 LYS B 301 REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 ILE A 298 REMARK 465 LYS A 299 REMARK 465 ILE A 300 REMARK 465 LYS A 301 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET B 1 CG SD CE REMARK 470 ASP B 7 CG OD1 OD2 REMARK 470 ARG B 41 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 86 CG CD OE1 OE2 REMARK 470 LYS B 99 CG CD CE NZ REMARK 470 LYS B 113 CG CD CE NZ REMARK 470 GLN B 114 CG CD OE1 NE2 REMARK 470 LYS B 121 CG CD CE NZ REMARK 470 GLU B 152 CG CD OE1 OE2 REMARK 470 LYS B 155 CG CD CE NZ REMARK 470 GLN B 169 CG CD OE1 NE2 REMARK 470 LYS B 172 CG CD CE NZ REMARK 470 ASP B 237 CG OD1 OD2 REMARK 470 GLU B 238 CG CD OE1 OE2 REMARK 470 LYS B 280 CG CD CE NZ REMARK 470 GLU B 281 CG CD OE1 OE2 REMARK 470 MET B 285 CG SD CE REMARK 470 ASN B 293 CG OD1 ND2 REMARK 470 GLU A 10 CG CD OE1 OE2 REMARK 470 LYS A 11 CG CD CE NZ REMARK 470 GLU A 14 CG CD OE1 OE2 REMARK 470 ARG A 41 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 ARG A 66 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 LYS A 113 CG CD CE NZ REMARK 470 GLN A 114 CG CD OE1 NE2 REMARK 470 LYS A 155 CG CD CE NZ REMARK 470 ARG A 163 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 238 CG CD OE1 OE2 REMARK 470 LYS A 269 CG CD CE NZ REMARK 470 LYS A 280 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 2 148.07 170.38 REMARK 500 ARG B 41 -13.05 70.34 REMARK 500 SER B 85 99.66 175.17 REMARK 500 GLU B 86 85.25 38.63 REMARK 500 MET B 90 109.26 -163.90 REMARK 500 PRO B 112 150.81 -49.35 REMARK 500 ASN B 141 8.44 -60.33 REMARK 500 ASP B 145 95.72 -58.83 REMARK 500 GLU B 164 -133.18 -100.08 REMARK 500 LEU B 165 159.45 -41.10 REMARK 500 LYS B 166 -148.49 -105.31 REMARK 500 LYS B 188 73.98 -100.87 REMARK 500 ASP B 197 43.75 -149.93 REMARK 500 ASP B 217 78.44 64.64 REMARK 500 SER B 224 -155.76 -174.72 REMARK 500 GLU B 235 108.80 98.12 REMARK 500 GLU B 239 -157.53 -131.07 REMARK 500 ASP B 256 58.34 -141.37 REMARK 500 ARG B 296 95.45 -66.42 REMARK 500 ARG A 41 16.93 51.54 REMARK 500 PRO A 84 -92.24 -47.89 REMARK 500 SER A 85 84.48 66.60 REMARK 500 GLU A 86 139.93 88.42 REMARK 500 TYR A 88 28.92 41.24 REMARK 500 MET A 90 112.26 -163.35 REMARK 500 ASP A 197 42.58 -142.69 REMARK 500 ASP A 217 70.38 64.52 REMARK 500 SER A 224 -167.92 -164.08 REMARK 500 SER A 232 -8.50 -56.77 REMARK 500 GLU A 235 104.51 -43.98 REMARK 500 ASP A 237 -80.20 -46.38 REMARK 500 GLU A 239 -155.89 -114.75 REMARK 500 ASP A 256 69.60 -156.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET B 234 GLU B 235 -146.85 REMARK 500 REMARK 500 REMARK: NULL DBREF 9QPD B 1 301 UNP O68183 O68183_ENTCA 1 301 DBREF 9QPD A 1 301 UNP O68183 O68183_ENTCA 1 301 SEQADV 9QPD MET B -19 UNP O68183 INITIATING METHIONINE SEQADV 9QPD GLY B -18 UNP O68183 EXPRESSION TAG SEQADV 9QPD SER B -17 UNP O68183 EXPRESSION TAG SEQADV 9QPD SER B -16 UNP O68183 EXPRESSION TAG SEQADV 9QPD HIS B -15 UNP O68183 EXPRESSION TAG SEQADV 9QPD HIS B -14 UNP O68183 EXPRESSION TAG SEQADV 9QPD HIS B -13 UNP O68183 EXPRESSION TAG SEQADV 9QPD HIS B -12 UNP O68183 EXPRESSION TAG SEQADV 9QPD HIS B -11 UNP O68183 EXPRESSION TAG SEQADV 9QPD HIS B -10 UNP O68183 EXPRESSION TAG SEQADV 9QPD SER B -9 UNP O68183 EXPRESSION TAG SEQADV 9QPD SER B -8 UNP O68183 EXPRESSION TAG SEQADV 9QPD GLY B -7 UNP O68183 EXPRESSION TAG SEQADV 9QPD LEU B -6 UNP O68183 EXPRESSION TAG SEQADV 9QPD VAL B -5 UNP O68183 EXPRESSION TAG SEQADV 9QPD PRO B -4 UNP O68183 EXPRESSION TAG SEQADV 9QPD ARG B -3 UNP O68183 EXPRESSION TAG SEQADV 9QPD GLY B -2 UNP O68183 EXPRESSION TAG SEQADV 9QPD SER B -1 UNP O68183 EXPRESSION TAG SEQADV 9QPD HIS B 0 UNP O68183 EXPRESSION TAG SEQADV 9QPD MET A -19 UNP O68183 INITIATING METHIONINE SEQADV 9QPD GLY A -18 UNP O68183 EXPRESSION TAG SEQADV 9QPD SER A -17 UNP O68183 EXPRESSION TAG SEQADV 9QPD SER A -16 UNP O68183 EXPRESSION TAG SEQADV 9QPD HIS A -15 UNP O68183 EXPRESSION TAG SEQADV 9QPD HIS A -14 UNP O68183 EXPRESSION TAG SEQADV 9QPD HIS A -13 UNP O68183 EXPRESSION TAG SEQADV 9QPD HIS A -12 UNP O68183 EXPRESSION TAG SEQADV 9QPD HIS A -11 UNP O68183 EXPRESSION TAG SEQADV 9QPD HIS A -10 UNP O68183 EXPRESSION TAG SEQADV 9QPD SER A -9 UNP O68183 EXPRESSION TAG SEQADV 9QPD SER A -8 UNP O68183 EXPRESSION TAG SEQADV 9QPD GLY A -7 UNP O68183 EXPRESSION TAG SEQADV 9QPD LEU A -6 UNP O68183 EXPRESSION TAG SEQADV 9QPD VAL A -5 UNP O68183 EXPRESSION TAG SEQADV 9QPD PRO A -4 UNP O68183 EXPRESSION TAG SEQADV 9QPD ARG A -3 UNP O68183 EXPRESSION TAG SEQADV 9QPD GLY A -2 UNP O68183 EXPRESSION TAG SEQADV 9QPD SER A -1 UNP O68183 EXPRESSION TAG SEQADV 9QPD HIS A 0 UNP O68183 EXPRESSION TAG SEQRES 1 B 321 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 321 LEU VAL PRO ARG GLY SER HIS MET ARG THR TYR THR PHE SEQRES 3 B 321 ASP GLN VAL GLU LYS ALA ILE GLU GLN LEU TYR PRO ASP SEQRES 4 B 321 PHE THR ILE ASN THR ILE GLU ILE SER GLY GLU GLY ASN SEQRES 5 B 321 ASP CYS ILE ALA TYR GLU ILE ASN ARG ASP PHE ILE PHE SEQRES 6 B 321 LYS PHE PRO LYS HIS SER ARG GLY SER THR ASN LEU PHE SEQRES 7 B 321 ASN GLU VAL ASN ILE LEU LYS ARG ILE HIS ASN LYS LEU SEQRES 8 B 321 PRO LEU PRO ILE PRO GLU VAL VAL PHE THR GLY MET PRO SEQRES 9 B 321 SER GLU THR TYR GLN MET SER PHE ALA GLY PHE THR LYS SEQRES 10 B 321 ILE LYS GLY VAL PRO LEU THR PRO LEU LEU LEU ASN ASN SEQRES 11 B 321 LEU PRO LYS GLN SER GLN ASN GLN ALA ALA LYS ASP LEU SEQRES 12 B 321 ALA ARG PHE LEU SER GLU LEU HIS SER ILE ASN ILE SER SEQRES 13 B 321 GLY PHE LYS SER ASN LEU VAL LEU ASP PHE ARG GLU LYS SEQRES 14 B 321 ILE ASN GLU ASP ASN LYS LYS ILE LYS LYS LEU LEU SER SEQRES 15 B 321 ARG GLU LEU LYS GLY PRO GLN MET LYS LYS VAL ASP ASP SEQRES 16 B 321 PHE TYR ARG ASP ILE LEU GLU ASN GLU ILE TYR PHE LYS SEQRES 17 B 321 TYR TYR PRO CYS LEU ILE HIS ASN ASP PHE SER SER ASP SEQRES 18 B 321 HIS ILE LEU PHE ASP THR GLU LYS ASN THR ILE CYS GLY SEQRES 19 B 321 ILE ILE ASP PHE GLY ASP ALA ALA ILE SER ASP PRO ASP SEQRES 20 B 321 ASN ASP PHE ILE SER LEU MET GLU ASP ASP GLU GLU TYR SEQRES 21 B 321 GLY MET GLU PHE VAL SER LYS ILE LEU ASN HIS TYR LYS SEQRES 22 B 321 HIS LYS ASP ILE PRO THR VAL LEU GLU LYS TYR ARG MET SEQRES 23 B 321 LYS GLU LYS TYR TRP SER PHE GLU LYS ILE ILE TYR GLY SEQRES 24 B 321 LYS GLU TYR GLY TYR MET ASP TRP TYR GLU GLU GLY LEU SEQRES 25 B 321 ASN GLU ILE ARG SER ILE LYS ILE LYS SEQRES 1 A 321 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 321 LEU VAL PRO ARG GLY SER HIS MET ARG THR TYR THR PHE SEQRES 3 A 321 ASP GLN VAL GLU LYS ALA ILE GLU GLN LEU TYR PRO ASP SEQRES 4 A 321 PHE THR ILE ASN THR ILE GLU ILE SER GLY GLU GLY ASN SEQRES 5 A 321 ASP CYS ILE ALA TYR GLU ILE ASN ARG ASP PHE ILE PHE SEQRES 6 A 321 LYS PHE PRO LYS HIS SER ARG GLY SER THR ASN LEU PHE SEQRES 7 A 321 ASN GLU VAL ASN ILE LEU LYS ARG ILE HIS ASN LYS LEU SEQRES 8 A 321 PRO LEU PRO ILE PRO GLU VAL VAL PHE THR GLY MET PRO SEQRES 9 A 321 SER GLU THR TYR GLN MET SER PHE ALA GLY PHE THR LYS SEQRES 10 A 321 ILE LYS GLY VAL PRO LEU THR PRO LEU LEU LEU ASN ASN SEQRES 11 A 321 LEU PRO LYS GLN SER GLN ASN GLN ALA ALA LYS ASP LEU SEQRES 12 A 321 ALA ARG PHE LEU SER GLU LEU HIS SER ILE ASN ILE SER SEQRES 13 A 321 GLY PHE LYS SER ASN LEU VAL LEU ASP PHE ARG GLU LYS SEQRES 14 A 321 ILE ASN GLU ASP ASN LYS LYS ILE LYS LYS LEU LEU SER SEQRES 15 A 321 ARG GLU LEU LYS GLY PRO GLN MET LYS LYS VAL ASP ASP SEQRES 16 A 321 PHE TYR ARG ASP ILE LEU GLU ASN GLU ILE TYR PHE LYS SEQRES 17 A 321 TYR TYR PRO CYS LEU ILE HIS ASN ASP PHE SER SER ASP SEQRES 18 A 321 HIS ILE LEU PHE ASP THR GLU LYS ASN THR ILE CYS GLY SEQRES 19 A 321 ILE ILE ASP PHE GLY ASP ALA ALA ILE SER ASP PRO ASP SEQRES 20 A 321 ASN ASP PHE ILE SER LEU MET GLU ASP ASP GLU GLU TYR SEQRES 21 A 321 GLY MET GLU PHE VAL SER LYS ILE LEU ASN HIS TYR LYS SEQRES 22 A 321 HIS LYS ASP ILE PRO THR VAL LEU GLU LYS TYR ARG MET SEQRES 23 A 321 LYS GLU LYS TYR TRP SER PHE GLU LYS ILE ILE TYR GLY SEQRES 24 A 321 LYS GLU TYR GLY TYR MET ASP TRP TYR GLU GLU GLY LEU SEQRES 25 A 321 ASN GLU ILE ARG SER ILE LYS ILE LYS HET DMS B 401 10 HET GVH B 402 15 HET GVH A 401 9 HETNAM DMS DIMETHYL SULFOXIDE HETNAM GVH 1H-PYRROLO[2,3-B]PYRIDINE FORMUL 3 DMS C2 H6 O S FORMUL 4 GVH 2(C7 H6 N2) FORMUL 6 HOH *50(H2 O) HELIX 1 AA1 THR B 5 TYR B 17 1 13 HELIX 2 AA2 HIS B 50 ILE B 67 1 18 HELIX 3 AA3 THR B 104 ASN B 110 1 7 HELIX 4 AA4 PRO B 112 HIS B 131 1 20 HELIX 5 AA5 LYS B 139 VAL B 143 5 5 HELIX 6 AA6 ASP B 145 LEU B 161 1 17 HELIX 7 AA7 SER B 162 GLU B 164 5 3 HELIX 8 AA8 LYS B 166 GLU B 182 1 17 HELIX 9 AA9 ASN B 183 PHE B 187 5 5 HELIX 10 AB1 SER B 199 ASP B 201 5 3 HELIX 11 AB2 ASP B 227 SER B 232 1 6 HELIX 12 AB3 GLY B 241 TYR B 252 1 12 HELIX 13 AB4 ASP B 256 GLY B 283 1 28 HELIX 14 AB5 TYR B 284 ARG B 296 1 13 HELIX 15 AB6 THR A 5 TYR A 17 1 13 HELIX 16 AB7 HIS A 50 HIS A 68 1 19 HELIX 17 AB8 THR A 104 LEU A 111 1 8 HELIX 18 AB9 PRO A 112 HIS A 131 1 20 HELIX 19 AC1 LYS A 139 VAL A 143 5 5 HELIX 20 AC2 ASP A 145 SER A 162 1 18 HELIX 21 AC3 LYS A 166 GLU A 182 1 17 HELIX 22 AC4 ASN A 183 PHE A 187 5 5 HELIX 23 AC5 SER A 199 ASP A 201 5 3 HELIX 24 AC6 ASP A 227 SER A 232 1 6 HELIX 25 AC7 GLY A 241 TYR A 252 1 12 HELIX 26 AC8 ASP A 256 GLY A 283 1 28 HELIX 27 AC9 TYR A 284 ARG A 296 1 13 SHEET 1 AA1 5 ILE B 25 GLU B 30 0 SHEET 2 AA1 5 CYS B 34 ILE B 39 -1 O ALA B 36 N SER B 28 SHEET 3 AA1 5 PHE B 43 PRO B 48 -1 O PHE B 45 N TYR B 37 SHEET 4 AA1 5 ALA B 93 THR B 96 -1 O PHE B 95 N ILE B 44 SHEET 5 AA1 5 VAL B 78 THR B 81 -1 N PHE B 80 O GLY B 94 SHEET 1 AA2 3 VAL B 101 PRO B 102 0 SHEET 2 AA2 3 ILE B 203 ASP B 206 -1 O PHE B 205 N VAL B 101 SHEET 3 AA2 3 THR B 211 ILE B 215 -1 O THR B 211 N ASP B 206 SHEET 1 AA3 2 CYS B 192 ILE B 194 0 SHEET 2 AA3 2 ALA B 222 SER B 224 -1 O ALA B 222 N ILE B 194 SHEET 1 AA4 5 ILE A 25 GLU A 30 0 SHEET 2 AA4 5 CYS A 34 ILE A 39 -1 O GLU A 38 N GLU A 26 SHEET 3 AA4 5 PHE A 43 PRO A 48 -1 O PHE A 45 N TYR A 37 SHEET 4 AA4 5 ALA A 93 THR A 96 -1 O PHE A 95 N ILE A 44 SHEET 5 AA4 5 VAL A 78 THR A 81 -1 N PHE A 80 O GLY A 94 SHEET 1 AA5 3 VAL A 101 PRO A 102 0 SHEET 2 AA5 3 ILE A 203 ASP A 206 -1 O PHE A 205 N VAL A 101 SHEET 3 AA5 3 THR A 211 ILE A 215 -1 O THR A 211 N ASP A 206 SHEET 1 AA6 2 CYS A 192 ILE A 194 0 SHEET 2 AA6 2 ALA A 222 SER A 224 -1 O ALA A 222 N ILE A 194 CRYST1 79.107 64.553 72.327 90.00 91.00 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012641 0.000000 0.000221 0.00000 SCALE2 0.000000 0.015491 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013828 0.00000 CONECT 4793 4794 4795 4796 CONECT 4794 4793 CONECT 4795 4793 4797 4798 4799 CONECT 4796 4793 4800 4801 4802 CONECT 4797 4795 CONECT 4798 4795 CONECT 4799 4795 CONECT 4800 4796 CONECT 4801 4796 CONECT 4802 4796 CONECT 4803 4804 4809 CONECT 4804 4803 4805 4810 CONECT 4805 4804 4806 4807 CONECT 4806 4805 4808 4814 CONECT 4807 4805 4811 4815 CONECT 4808 4806 4809 4816 CONECT 4809 4803 4808 4812 CONECT 4810 4804 4811 4813 CONECT 4811 4807 4810 4817 CONECT 4812 4809 CONECT 4813 4810 CONECT 4814 4806 CONECT 4815 4807 CONECT 4816 4808 CONECT 4817 4811 CONECT 4818 4819 4824 CONECT 4819 4818 4820 4825 CONECT 4820 4819 4821 4822 CONECT 4821 4820 4823 CONECT 4822 4820 4826 CONECT 4823 4821 4824 CONECT 4824 4818 4823 CONECT 4825 4819 4826 CONECT 4826 4822 4825 MASTER 496 0 3 27 20 0 0 6 4844 2 34 50 END