HEADER HYDROLASE 08-APR-25 9QTE TITLE SIMKANIA NEGEVENSIS CE-CLAN VIRULENCE FACTOR SNCE1 WILDTYPE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEUBIQUITINASE AND DENEDDYLASE CHLADUB2; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: STARTING AMINO ACIDS CORRESPOND TO EXPRESSION TAG, COMPND 6 AMINO ACIDS 206/209 TO 212 NOT RESOLVED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SIMKANIA NEGEVENSIS Z; SOURCE 3 ORGANISM_TAXID: 331113; SOURCE 4 GENE: CDU2, SNE_A10940; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX6P.1 KEYWDS CYSTEINE PROTEASE, CE-CLAN, UBL PROTEASE, DESUMOYLASE, SUMO PATHWAY, KEYWDS 2 VIRULENCE FACTOR, BACTERIAL VIRULENCE, PATHOGENESIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR O.SCHMOEKER,B.GIRBARDT,G.J.PALM,J.HOPPEN,S.SCHULZE,M.LAMMERS REVDAT 1 08-APR-26 9QTE 0 JRNL AUTH O.SCHMOEKER,B.GIRBARDT,L.M.MAYER,S.SCHULZE,G.J.PALM, JRNL AUTH 2 L.BERNDT,J.HOPPEN,N.KARA,X.SCHOEPS,L.STEIL,K.SCHOKNECHT, JRNL AUTH 3 K.GARZ,R.AL-ABDULLA,S.MOELLER,H.JUNKER,V.BOLL,M.DOERR, JRNL AUTH 4 S.KEMNITZ,K.HOFMANN,U.T.BORNSCHEUER,U.VOELKER,E.KRUEGER, JRNL AUTH 5 V.KOZJAK-PAVLOVIC,M.LAMMERS JRNL TITL SIMKANIA NEGEVENSIS CE-CLAN VIRULENCE FACTOR SNCE1 WILDTYPE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 15887 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.715 REMARK 3 FREE R VALUE TEST SET COUNT : 749 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.82 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 877 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.3480 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.3570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5057 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.68100 REMARK 3 B22 (A**2) : -1.68100 REMARK 3 B33 (A**2) : 3.36200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.449 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.418 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 49.506 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.894 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.876 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5222 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4825 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7047 ; 1.572 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11110 ; 1.287 ; 1.589 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 592 ; 6.926 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 319 ;31.437 ;22.571 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 902 ;16.869 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;15.962 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 600 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5908 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1340 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 843 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 101 ; 0.248 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2511 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 70 ; 0.124 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.126 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2377 ; 1.992 ; 3.629 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2376 ; 1.992 ; 3.630 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2966 ; 3.256 ; 5.441 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2967 ; 3.255 ; 5.441 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2845 ; 1.774 ; 3.769 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2842 ; 1.773 ; 3.769 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4081 ; 3.002 ; 5.589 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4082 ; 3.002 ; 5.589 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 3 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 34 A 229 NULL REMARK 3 1 B 34 B 229 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 34 A 229 NULL REMARK 3 1 C 34 C 229 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 34 B 229 NULL REMARK 3 1 C 34 C 229 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 233 REMARK 3 ORIGIN FOR THE GROUP (A): 25.9286 2.9663 10.6541 REMARK 3 T TENSOR REMARK 3 T11: 0.0979 T22: 0.1131 REMARK 3 T33: 0.0206 T12: 0.0155 REMARK 3 T13: -0.0165 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 5.1816 L22: 3.7139 REMARK 3 L33: 2.4196 L12: 0.4758 REMARK 3 L13: -0.2366 L23: -0.4440 REMARK 3 S TENSOR REMARK 3 S11: -0.1495 S12: -0.4884 S13: -0.0313 REMARK 3 S21: 0.3211 S22: 0.0611 S23: -0.2574 REMARK 3 S31: 0.2348 S32: 0.1843 S33: 0.0884 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 34 B 230 REMARK 3 ORIGIN FOR THE GROUP (A): 49.7531 26.8737 -7.8388 REMARK 3 T TENSOR REMARK 3 T11: 0.0767 T22: 0.0876 REMARK 3 T33: 0.0350 T12: -0.0044 REMARK 3 T13: -0.0143 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 3.2250 L22: 5.3701 REMARK 3 L33: 2.2073 L12: -0.6200 REMARK 3 L13: -0.5157 L23: 0.0179 REMARK 3 S TENSOR REMARK 3 S11: 0.0909 S12: 0.2305 S13: -0.2151 REMARK 3 S21: -0.3931 S22: -0.0914 S23: -0.1460 REMARK 3 S31: 0.1321 S32: 0.1467 S33: 0.0005 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 33 C 230 REMARK 3 ORIGIN FOR THE GROUP (A): 26.0554 1.7349 -27.4791 REMARK 3 T TENSOR REMARK 3 T11: 0.2455 T22: 0.3905 REMARK 3 T33: 0.2207 T12: -0.0042 REMARK 3 T13: 0.0099 T23: -0.0542 REMARK 3 L TENSOR REMARK 3 L11: 3.1559 L22: 4.5321 REMARK 3 L33: 2.2427 L12: 1.5904 REMARK 3 L13: -0.4133 L23: -0.6626 REMARK 3 S TENSOR REMARK 3 S11: 0.0025 S12: 0.2803 S13: -0.0927 REMARK 3 S21: -0.2624 S22: 0.0371 S23: -0.3511 REMARK 3 S31: -0.2400 S32: 0.2501 S33: -0.0396 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9QTE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-APR-25. REMARK 100 THE DEPOSITION ID IS D_1292146260. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15908 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.820 REMARK 200 RESOLUTION RANGE LOW (A) : 47.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.22800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 8.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 47.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 11.80 REMARK 200 R MERGE FOR SHELL (I) : 0.10300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 18.10 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.18 M SODIUM MALONATE PH 5.0, 20% PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.82250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.82250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.04300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.82250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.82250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.04300 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 52.82250 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 52.82250 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 61.04300 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 52.82250 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 52.82250 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 61.04300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 26 REMARK 465 PRO A 27 REMARK 465 GLY A 28 REMARK 465 LEU A 29 REMARK 465 SER A 30 REMARK 465 GLY A 31 REMARK 465 GLU A 32 REMARK 465 LYS A 33 REMARK 465 THR A 234 REMARK 465 LEU A 235 REMARK 465 TYR A 236 REMARK 465 CYS A 237 REMARK 465 GLY B 26 REMARK 465 PRO B 27 REMARK 465 GLY B 28 REMARK 465 LEU B 29 REMARK 465 SER B 30 REMARK 465 GLY B 31 REMARK 465 GLU B 32 REMARK 465 LYS B 33 REMARK 465 ASN B 231 REMARK 465 GLY B 232 REMARK 465 ASN B 233 REMARK 465 THR B 234 REMARK 465 LEU B 235 REMARK 465 TYR B 236 REMARK 465 CYS B 237 REMARK 465 GLY C 26 REMARK 465 PRO C 27 REMARK 465 GLY C 28 REMARK 465 LEU C 29 REMARK 465 SER C 30 REMARK 465 GLY C 31 REMARK 465 GLU C 32 REMARK 465 ASN C 231 REMARK 465 GLY C 232 REMARK 465 ASN C 233 REMARK 465 THR C 234 REMARK 465 LEU C 235 REMARK 465 TYR C 236 REMARK 465 CYS C 237 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 58 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG A 35 O HOH A 401 1.49 REMARK 500 NH2 ARG A 35 O HOH A 401 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 218 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 222 NE - CZ - NH1 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 222 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG C 125 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG C 125 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 137 -63.04 73.14 REMARK 500 ASN A 138 43.73 -141.23 REMARK 500 ASN A 141 58.47 -91.67 REMARK 500 ASP B 39 -155.35 -108.98 REMARK 500 ILE B 137 -62.97 72.96 REMARK 500 ASN B 138 42.81 -141.43 REMARK 500 ASN B 141 59.00 -91.08 REMARK 500 ASP C 34 -23.78 68.03 REMARK 500 ASP C 39 -163.89 -112.42 REMARK 500 ILE C 137 -62.66 73.59 REMARK 500 ASN C 138 42.40 -141.44 REMARK 500 ASN C 141 56.82 -90.69 REMARK 500 REMARK 500 REMARK: NULL DBREF 9QTE A 31 237 UNP F8L4W9 F8L4W9_SIMNZ 104 310 DBREF 9QTE B 31 237 UNP F8L4W9 F8L4W9_SIMNZ 104 310 DBREF 9QTE C 31 237 UNP F8L4W9 F8L4W9_SIMNZ 104 310 SEQADV 9QTE GLY A 26 UNP F8L4W9 EXPRESSION TAG SEQADV 9QTE PRO A 27 UNP F8L4W9 EXPRESSION TAG SEQADV 9QTE GLY A 28 UNP F8L4W9 EXPRESSION TAG SEQADV 9QTE LEU A 29 UNP F8L4W9 EXPRESSION TAG SEQADV 9QTE SER A 30 UNP F8L4W9 EXPRESSION TAG SEQADV 9QTE GLY B 26 UNP F8L4W9 EXPRESSION TAG SEQADV 9QTE PRO B 27 UNP F8L4W9 EXPRESSION TAG SEQADV 9QTE GLY B 28 UNP F8L4W9 EXPRESSION TAG SEQADV 9QTE LEU B 29 UNP F8L4W9 EXPRESSION TAG SEQADV 9QTE SER B 30 UNP F8L4W9 EXPRESSION TAG SEQADV 9QTE GLY C 26 UNP F8L4W9 EXPRESSION TAG SEQADV 9QTE PRO C 27 UNP F8L4W9 EXPRESSION TAG SEQADV 9QTE GLY C 28 UNP F8L4W9 EXPRESSION TAG SEQADV 9QTE LEU C 29 UNP F8L4W9 EXPRESSION TAG SEQADV 9QTE SER C 30 UNP F8L4W9 EXPRESSION TAG SEQRES 1 A 212 GLY PRO GLY LEU SER GLY GLU LYS ASP ARG PHE LEU ILE SEQRES 2 A 212 ASP GLU ARG ASN TRP LEU ASN ASN GLN HIS LEU GLY LEU SEQRES 3 A 212 TYR SER LEU PHE LEU GLN GLU LYS TYR GLY PRO GLU VAL SEQRES 4 A 212 PHE PHE PRO PHE GLY GLY TRP THR TYR VAL PHE PRO GLY SEQRES 5 A 212 LEU THR ASP ARG PHE PHE LYS GLU ASP SER TYR HIS ILE SEQRES 6 A 212 LEU ASP VAL ARG ALA LYS ARG ILE LYS SER PHE LEU ASP SEQRES 7 A 212 TYR LYS SER ILE THR TYR PRO LEU PHE ILE GLY GLY ASN SEQRES 8 A 212 HIS TRP GLY LEU LEU PHE ILE ASP ARG GLU LYS ARG THR SEQRES 9 A 212 VAL GLU TYR TYR ASP SER LYS ILE ASN TYR GLY ASN TYR SEQRES 10 A 212 GLU GLU GLY LEU GLN GLY ILE LYS ASP VAL ALA ALA LYS SEQRES 11 A 212 PHE THR LYS TYR ASP PRO GLY GLU LYS PRO TYR THR TYR SEQRES 12 A 212 LEU GLU LYS ILE LYS LYS LYS LEU GLN PRO ASP GLY TYR SEQRES 13 A 212 GLN CYS GLY PRO TRP ALA LEU TYR PHE LEU GLU HIS ARG SEQRES 14 A 212 LEU GLU ASN PRO GLU VAL ASP PHE ASN GLN LEU ASP LEU SEQRES 15 A 212 ASN GLU ALA GLN ASN MET ILE ALA LYS TYR ARG PHE ALA SEQRES 16 A 212 VAL ARG ASP LYS LEU LEU GLU LEU GLN LYS ASN GLY ASN SEQRES 17 A 212 THR LEU TYR CYS SEQRES 1 B 212 GLY PRO GLY LEU SER GLY GLU LYS ASP ARG PHE LEU ILE SEQRES 2 B 212 ASP GLU ARG ASN TRP LEU ASN ASN GLN HIS LEU GLY LEU SEQRES 3 B 212 TYR SER LEU PHE LEU GLN GLU LYS TYR GLY PRO GLU VAL SEQRES 4 B 212 PHE PHE PRO PHE GLY GLY TRP THR TYR VAL PHE PRO GLY SEQRES 5 B 212 LEU THR ASP ARG PHE PHE LYS GLU ASP SER TYR HIS ILE SEQRES 6 B 212 LEU ASP VAL ARG ALA LYS ARG ILE LYS SER PHE LEU ASP SEQRES 7 B 212 TYR LYS SER ILE THR TYR PRO LEU PHE ILE GLY GLY ASN SEQRES 8 B 212 HIS TRP GLY LEU LEU PHE ILE ASP ARG GLU LYS ARG THR SEQRES 9 B 212 VAL GLU TYR TYR ASP SER LYS ILE ASN TYR GLY ASN TYR SEQRES 10 B 212 GLU GLU GLY LEU GLN GLY ILE LYS ASP VAL ALA ALA LYS SEQRES 11 B 212 PHE THR LYS TYR ASP PRO GLY GLU LYS PRO TYR THR TYR SEQRES 12 B 212 LEU GLU LYS ILE LYS LYS LYS LEU GLN PRO ASP GLY TYR SEQRES 13 B 212 GLN CYS GLY PRO TRP ALA LEU TYR PHE LEU GLU HIS ARG SEQRES 14 B 212 LEU GLU ASN PRO GLU VAL ASP PHE ASN GLN LEU ASP LEU SEQRES 15 B 212 ASN GLU ALA GLN ASN MET ILE ALA LYS TYR ARG PHE ALA SEQRES 16 B 212 VAL ARG ASP LYS LEU LEU GLU LEU GLN LYS ASN GLY ASN SEQRES 17 B 212 THR LEU TYR CYS SEQRES 1 C 212 GLY PRO GLY LEU SER GLY GLU LYS ASP ARG PHE LEU ILE SEQRES 2 C 212 ASP GLU ARG ASN TRP LEU ASN ASN GLN HIS LEU GLY LEU SEQRES 3 C 212 TYR SER LEU PHE LEU GLN GLU LYS TYR GLY PRO GLU VAL SEQRES 4 C 212 PHE PHE PRO PHE GLY GLY TRP THR TYR VAL PHE PRO GLY SEQRES 5 C 212 LEU THR ASP ARG PHE PHE LYS GLU ASP SER TYR HIS ILE SEQRES 6 C 212 LEU ASP VAL ARG ALA LYS ARG ILE LYS SER PHE LEU ASP SEQRES 7 C 212 TYR LYS SER ILE THR TYR PRO LEU PHE ILE GLY GLY ASN SEQRES 8 C 212 HIS TRP GLY LEU LEU PHE ILE ASP ARG GLU LYS ARG THR SEQRES 9 C 212 VAL GLU TYR TYR ASP SER LYS ILE ASN TYR GLY ASN TYR SEQRES 10 C 212 GLU GLU GLY LEU GLN GLY ILE LYS ASP VAL ALA ALA LYS SEQRES 11 C 212 PHE THR LYS TYR ASP PRO GLY GLU LYS PRO TYR THR TYR SEQRES 12 C 212 LEU GLU LYS ILE LYS LYS LYS LEU GLN PRO ASP GLY TYR SEQRES 13 C 212 GLN CYS GLY PRO TRP ALA LEU TYR PHE LEU GLU HIS ARG SEQRES 14 C 212 LEU GLU ASN PRO GLU VAL ASP PHE ASN GLN LEU ASP LEU SEQRES 15 C 212 ASN GLU ALA GLN ASN MET ILE ALA LYS TYR ARG PHE ALA SEQRES 16 C 212 VAL ARG ASP LYS LEU LEU GLU LEU GLN LYS ASN GLY ASN SEQRES 17 C 212 THR LEU TYR CYS HET MLI A 301 9 HET MLI C 301 9 HETNAM MLI MALONATE ION FORMUL 4 MLI 2(C3 H2 O4 2-) FORMUL 6 HOH *10(H2 O) HELIX 1 AA1 ASN A 45 GLY A 61 1 17 HELIX 2 AA2 PRO A 76 PHE A 82 5 7 HELIX 3 AA3 SER A 100 TYR A 104 5 5 HELIX 4 AA4 ASN A 141 ASP A 160 1 20 HELIX 5 AA5 GLN A 182 ASN A 197 1 16 HELIX 6 AA6 ASP A 201 LEU A 205 5 5 HELIX 7 AA7 ASP A 206 GLY A 232 1 27 HELIX 8 AA8 ASN B 45 GLY B 61 1 17 HELIX 9 AA9 PRO B 76 PHE B 82 5 7 HELIX 10 AB1 SER B 100 TYR B 104 5 5 HELIX 11 AB2 ASN B 141 ASP B 160 1 20 HELIX 12 AB3 GLN B 182 ASN B 197 1 16 HELIX 13 AB4 ASP B 201 LEU B 205 5 5 HELIX 14 AB5 ASP B 206 GLN B 229 1 24 HELIX 15 AB6 ASN C 45 GLY C 61 1 17 HELIX 16 AB7 PRO C 76 PHE C 82 5 7 HELIX 17 AB8 SER C 100 TYR C 104 5 5 HELIX 18 AB9 ASN C 141 ASP C 160 1 20 HELIX 19 AC1 GLN C 182 ASN C 197 1 16 HELIX 20 AC2 ASP C 201 LEU C 205 5 5 HELIX 21 AC3 ASP C 206 LYS C 230 1 25 SHEET 1 AA1 5 VAL A 64 PHE A 65 0 SHEET 2 AA1 5 SER A 106 GLY A 114 1 O SER A 106 N PHE A 65 SHEET 3 AA1 5 HIS A 117 ASP A 124 -1 O ILE A 123 N ILE A 107 SHEET 4 AA1 5 THR A 129 TYR A 133 -1 O TYR A 133 N LEU A 120 SHEET 5 AA1 5 THR A 167 GLU A 170 1 O LEU A 169 N TYR A 132 SHEET 1 AA2 5 VAL B 64 PHE B 65 0 SHEET 2 AA2 5 SER B 106 GLY B 114 1 O SER B 106 N PHE B 65 SHEET 3 AA2 5 HIS B 117 ASP B 124 -1 O ILE B 123 N ILE B 107 SHEET 4 AA2 5 THR B 129 TYR B 133 -1 O TYR B 133 N LEU B 120 SHEET 5 AA2 5 THR B 167 GLU B 170 1 O LEU B 169 N TYR B 132 SHEET 1 AA3 5 VAL C 64 PHE C 65 0 SHEET 2 AA3 5 SER C 106 GLY C 114 1 O SER C 106 N PHE C 65 SHEET 3 AA3 5 HIS C 117 ASP C 124 -1 O ILE C 123 N ILE C 107 SHEET 4 AA3 5 THR C 129 TYR C 133 -1 O GLU C 131 N PHE C 122 SHEET 5 AA3 5 THR C 167 GLU C 170 1 O LEU C 169 N TYR C 132 CISPEP 1 PHE A 75 PRO A 76 0 6.30 CISPEP 2 PHE B 75 PRO B 76 0 6.46 CISPEP 3 PHE C 75 PRO C 76 0 5.40 CRYST1 105.645 105.645 122.086 90.00 90.00 90.00 I 4 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009466 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009466 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008191 0.00000 CONECT 9985 9986 9987 9992 9993 CONECT 9986 9985 9988 9989 CONECT 9987 9985 9990 9991 CONECT 9988 9986 CONECT 9989 9986 CONECT 9990 9987 CONECT 9991 9987 CONECT 9992 9985 CONECT 9993 9985 CONECT 9994 9995 99961000110002 CONECT 9995 9994 9997 9998 CONECT 9996 9994 999910000 CONECT 9997 9995 CONECT 9998 9995 CONECT 9999 9996 CONECT10000 9996 CONECT10001 9994 CONECT10002 9994 MASTER 460 0 2 21 15 0 0 6 5081 3 18 51 END