HEADER HYDROLASE 08-APR-25 9QTH TITLE INQUILINUS NRNC COMPND MOL_ID: 1; COMPND 2 MOLECULE: INQUILINUS NRNC; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INQUILINUS LIMOSUS; SOURCE 3 ORGANISM_TAXID: 171674; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEASE, NRNC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MORTENSEN,A.BURNIM,K.DUFAULT-THOMPSON,X.JIANG,A.E.LIPKA, AUTHOR 2 H.SONDERMANN REVDAT 1 22-APR-26 9QTH 0 JRNL AUTH S.MORTENSEN,A.BURNIM,K.DUFAULT-THOMPSON,X.JIANG,A.E.LIPKA, JRNL AUTH 2 H.SONDERMANN JRNL TITL ANCESTRAL PROTEINS TRACE THE EMERGENCE OF SUBSTRATE JRNL TITL 2 SPECIFICITY AND OLIGOMERIZATION WITHIN BACTERIAL DEDDY JRNL TITL 3 DINUCLEASES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 49496 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.590 REMARK 3 FREE R VALUE TEST SET COUNT : 1495 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1900 - 4.0000 1.00 8393 136 0.1493 0.1530 REMARK 3 2 4.0000 - 3.1800 0.99 8351 134 0.1540 0.1709 REMARK 3 3 3.1800 - 2.7800 1.00 8424 133 0.1803 0.2065 REMARK 3 4 2.7800 - 2.5200 1.00 8398 139 0.1774 0.2283 REMARK 3 5 2.5200 - 2.3400 1.00 8400 135 0.1808 0.2180 REMARK 3 6 2.3400 - 2.2000 1.00 8375 136 0.1652 0.1873 REMARK 3 7 2.2000 - 2.0900 1.00 8426 137 0.1726 0.2278 REMARK 3 8 2.0900 - 2.0000 1.00 8386 142 0.1836 0.2068 REMARK 3 9 2.0000 - 1.9200 1.00 8357 134 0.2037 0.2419 REMARK 3 10 1.9200 - 1.8600 1.00 8403 136 0.2550 0.2467 REMARK 3 11 1.8600 - 1.8000 1.00 8345 133 0.3556 0.3478 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.179 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.972 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3225 REMARK 3 ANGLE : 0.893 4379 REMARK 3 CHIRALITY : 0.051 503 REMARK 3 PLANARITY : 0.007 571 REMARK 3 DIHEDRAL : 12.483 1191 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.8844 -31.4611 4.4863 REMARK 3 T TENSOR REMARK 3 T11: 0.1040 T22: 0.1402 REMARK 3 T33: 0.1210 T12: 0.0329 REMARK 3 T13: 0.0423 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 3.2715 L22: 4.9018 REMARK 3 L33: 3.6658 L12: 1.3716 REMARK 3 L13: 0.3195 L23: 0.7720 REMARK 3 S TENSOR REMARK 3 S11: 0.0307 S12: 0.0927 S13: 0.0471 REMARK 3 S21: -0.0989 S22: 0.0586 S23: -0.1569 REMARK 3 S31: 0.1960 S32: 0.0617 S33: -0.0652 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.8454 -28.2994 12.6604 REMARK 3 T TENSOR REMARK 3 T11: 0.0693 T22: 0.0843 REMARK 3 T33: 0.0802 T12: -0.0001 REMARK 3 T13: 0.0014 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 3.5741 L22: 2.0947 REMARK 3 L33: 2.1944 L12: 0.0154 REMARK 3 L13: -0.6333 L23: 0.5726 REMARK 3 S TENSOR REMARK 3 S11: -0.0112 S12: 0.0013 S13: -0.0825 REMARK 3 S21: -0.0063 S22: 0.0036 S23: 0.0088 REMARK 3 S31: 0.0914 S32: -0.2016 S33: 0.0153 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.5160 -14.0681 15.3650 REMARK 3 T TENSOR REMARK 3 T11: 0.0946 T22: 0.0913 REMARK 3 T33: 0.0860 T12: 0.0223 REMARK 3 T13: 0.0018 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.6178 L22: 2.8988 REMARK 3 L33: 1.2209 L12: 0.6533 REMARK 3 L13: -0.0273 L23: -0.1148 REMARK 3 S TENSOR REMARK 3 S11: 0.0452 S12: -0.0050 S13: 0.0755 REMARK 3 S21: -0.1150 S22: -0.0414 S23: 0.1287 REMARK 3 S31: -0.1447 S32: -0.0666 S33: -0.0093 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): -47.9777 -20.4431 3.5310 REMARK 3 T TENSOR REMARK 3 T11: 0.1561 T22: 0.2076 REMARK 3 T33: 0.1585 T12: 0.0527 REMARK 3 T13: -0.0153 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 5.6435 L22: 3.5244 REMARK 3 L33: 3.0563 L12: 4.4505 REMARK 3 L13: -1.4884 L23: -1.4353 REMARK 3 S TENSOR REMARK 3 S11: -0.0539 S12: 0.2526 S13: 0.3724 REMARK 3 S21: -0.2389 S22: 0.0949 S23: 0.3799 REMARK 3 S31: -0.0542 S32: -0.4316 S33: -0.0350 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 158 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.1174 -10.9584 22.2593 REMARK 3 T TENSOR REMARK 3 T11: 0.1043 T22: 0.1136 REMARK 3 T33: 0.1108 T12: 0.0076 REMARK 3 T13: -0.0111 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 0.3072 L22: 1.2205 REMARK 3 L33: 2.1392 L12: -0.0300 REMARK 3 L13: -0.1083 L23: -0.0247 REMARK 3 S TENSOR REMARK 3 S11: -0.0453 S12: -0.0036 S13: 0.0145 REMARK 3 S21: -0.0011 S22: -0.0158 S23: -0.1146 REMARK 3 S31: -0.0259 S32: -0.1298 S33: 0.0368 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8276 0.8660 55.3672 REMARK 3 T TENSOR REMARK 3 T11: 0.2797 T22: 0.2161 REMARK 3 T33: 0.3236 T12: 0.0488 REMARK 3 T13: -0.1509 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.3250 L22: 5.8139 REMARK 3 L33: 1.3291 L12: -0.3075 REMARK 3 L13: 0.6565 L23: 1.1299 REMARK 3 S TENSOR REMARK 3 S11: -0.0999 S12: -0.2431 S13: -0.1152 REMARK 3 S21: 0.9818 S22: 0.2748 S23: -0.6722 REMARK 3 S31: 0.1257 S32: 0.2746 S33: 0.1011 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.6637 4.0112 47.1955 REMARK 3 T TENSOR REMARK 3 T11: 0.1340 T22: 0.1004 REMARK 3 T33: 0.1001 T12: -0.0139 REMARK 3 T13: -0.0220 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 2.7955 L22: 4.1219 REMARK 3 L33: 1.8400 L12: -1.1210 REMARK 3 L13: 0.5976 L23: 0.2806 REMARK 3 S TENSOR REMARK 3 S11: 0.0186 S12: -0.0287 S13: 0.1098 REMARK 3 S21: 0.1360 S22: 0.0471 S23: -0.2382 REMARK 3 S31: -0.1835 S32: 0.0295 S33: -0.0141 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 70 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.7376 -8.3477 44.4740 REMARK 3 T TENSOR REMARK 3 T11: 0.1057 T22: 0.0926 REMARK 3 T33: 0.0825 T12: 0.0264 REMARK 3 T13: -0.0172 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.4112 L22: 3.0474 REMARK 3 L33: 1.4352 L12: 1.4603 REMARK 3 L13: -0.2593 L23: -0.2110 REMARK 3 S TENSOR REMARK 3 S11: -0.0008 S12: -0.0818 S13: 0.0542 REMARK 3 S21: 0.0377 S22: -0.0016 S23: 0.1105 REMARK 3 S31: -0.0502 S32: -0.0943 S33: -0.0211 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 126 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.6891 3.8547 56.2890 REMARK 3 T TENSOR REMARK 3 T11: 0.2369 T22: 0.1855 REMARK 3 T33: 0.1657 T12: 0.0189 REMARK 3 T13: 0.0057 T23: -0.0291 REMARK 3 L TENSOR REMARK 3 L11: 0.1238 L22: 8.2379 REMARK 3 L33: 2.0942 L12: -0.1255 REMARK 3 L13: -0.3691 L23: -2.4992 REMARK 3 S TENSOR REMARK 3 S11: 0.0453 S12: -0.1304 S13: 0.0816 REMARK 3 S21: 0.5034 S22: 0.0480 S23: 0.6056 REMARK 3 S31: -0.1698 S32: -0.0472 S33: -0.1133 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 158 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.0068 -12.8756 37.5858 REMARK 3 T TENSOR REMARK 3 T11: 0.1190 T22: 0.1299 REMARK 3 T33: 0.1363 T12: 0.0150 REMARK 3 T13: -0.0035 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.3608 L22: 1.0980 REMARK 3 L33: 1.8554 L12: 0.0916 REMARK 3 L13: 0.0889 L23: -0.3091 REMARK 3 S TENSOR REMARK 3 S11: -0.0593 S12: 0.0099 S13: -0.0761 REMARK 3 S21: -0.0040 S22: 0.0294 S23: -0.0405 REMARK 3 S31: -0.1322 S32: -0.0715 S33: 0.0204 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 2 through 35 or REMARK 3 resid 37 through 75 or resid 77 through REMARK 3 130 or resid 132 through 204)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 2 through 35 or REMARK 3 resid 37 through 75 or resid 77 through REMARK 3 130 or resid 132 through 204)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9QTH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-APR-25. REMARK 100 THE DEPOSITION ID IS D_1292146870. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49513 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 46.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 18.40 REMARK 200 R MERGE (I) : 0.17930 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 18.90 REMARK 200 R MERGE FOR SHELL (I) : 2.33200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 0.1 M BIS REMARK 280 -TRIS (PH 5.5), 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 60.35400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 60.35400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 60.35400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 60.35400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 60.35400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.35400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 60.35400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.35400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -120.70800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -60.35400 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 60.35400 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 -60.35400 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 -60.35400 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 119 O HOH B 401 2.10 REMARK 500 OD2 ASP B 123 O HOH B 402 2.14 REMARK 500 O HOH A 454 O HOH A 504 2.15 REMARK 500 O HOH B 623 O HOH B 667 2.16 REMARK 500 O HOH B 460 O HOH B 579 2.19 REMARK 500 NZ LYS B 131 O HOH B 403 2.19 REMARK 500 OD2 ASP B 154 O HOH B 404 2.19 REMARK 500 O HOH B 619 O HOH B 653 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 630 O HOH A 630 7555 2.12 REMARK 500 O HOH A 650 O HOH B 686 7556 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 61 62.17 21.02 REMARK 500 PHE A 79 67.21 63.70 REMARK 500 SER A 135 41.67 -100.39 REMARK 500 ALA B 61 63.07 20.75 REMARK 500 PHE B 79 66.16 61.60 REMARK 500 SER B 135 41.60 -98.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 703 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 704 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 705 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH B 691 DISTANCE = 6.41 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 24 OD1 REMARK 620 2 ASP A 24 OD2 48.5 REMARK 620 3 HOH A 404 O 75.8 111.9 REMARK 620 4 HOH A 421 O 76.7 112.9 81.6 REMARK 620 5 HOH A 446 O 90.5 59.9 90.1 166.1 REMARK 620 6 HOH A 554 O 104.4 69.4 178.0 96.4 91.9 REMARK 620 7 HOH A 656 O 164.1 144.5 88.6 98.0 92.9 91.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 26 OE2 REMARK 620 2 ASP A 154 OD2 94.3 REMARK 620 3 HOH A 446 O 89.6 95.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 24 OD1 REMARK 620 2 HOH B 479 O 143.4 REMARK 620 3 HOH B 651 O 138.3 75.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 24 OD2 REMARK 620 2 HOH B 404 O 100.6 REMARK 620 N 1 DBREF 9QTH A 1 204 PDB 9QTH 9QTH 1 204 DBREF 9QTH B 1 204 PDB 9QTH 9QTH 1 204 SEQRES 1 A 204 MET SER GLU PRO ILE LEU HIS ASP GLY ASP LEU PRO ASP SEQRES 2 A 204 GLY LEU ASP LEU GLY ASP VAL ILE ALA ILE ASP THR GLU SEQRES 3 A 204 THR MET GLY LEU ASN PRO VAL ARG ASP ARG LEU CYS LEU SEQRES 4 A 204 VAL GLN LEU SER ALA GLY ASP GLY THR VAL HIS LEU VAL SEQRES 5 A 204 GLN LEU ARG LYS GLY ALA TYR ASP ALA PRO ASN VAL LYS SEQRES 6 A 204 ALA LEU LEU ALA ASP PRO ALA ARG LEU LYS LEU PHE HIS SEQRES 7 A 204 PHE ALA ARG PHE ASP ILE ALA ALA LEU GLN ALA TYR LEU SEQRES 8 A 204 GLY VAL VAL THR ALA PRO VAL TYR CYS THR LYS ILE ALA SEQRES 9 A 204 SER ARG LEU VAL ARG THR PHE THR ASP ARG HIS GLY LEU SEQRES 10 A 204 LYS ASP LEU CYS ARG ASP LEU LEU GLY VAL GLU LEU SER SEQRES 11 A 204 LYS GLN GLN GLN SER SER ASP TRP GLY SER ASP GLN LEU SEQRES 12 A 204 THR PRO GLU GLN LEU ARG TYR ALA ALA SER ASP VAL LEU SEQRES 13 A 204 TYR LEU HIS ALA LEU LYS ALA LYS LEU ASP GLU MET LEU SEQRES 14 A 204 ARG ARG GLU GLY ARG GLU ALA LEU ALA GLN ALA CYS TYR SEQRES 15 A 204 ASP PHE LEU PRO THR ARG ALA ALA LEU ASP LEU GLY GLY SEQRES 16 A 204 TRP SER ASP LEU ASP ILE PHE ALA HIS SEQRES 1 B 204 MET SER GLU PRO ILE LEU HIS ASP GLY ASP LEU PRO ASP SEQRES 2 B 204 GLY LEU ASP LEU GLY ASP VAL ILE ALA ILE ASP THR GLU SEQRES 3 B 204 THR MET GLY LEU ASN PRO VAL ARG ASP ARG LEU CYS LEU SEQRES 4 B 204 VAL GLN LEU SER ALA GLY ASP GLY THR VAL HIS LEU VAL SEQRES 5 B 204 GLN LEU ARG LYS GLY ALA TYR ASP ALA PRO ASN VAL LYS SEQRES 6 B 204 ALA LEU LEU ALA ASP PRO ALA ARG LEU LYS LEU PHE HIS SEQRES 7 B 204 PHE ALA ARG PHE ASP ILE ALA ALA LEU GLN ALA TYR LEU SEQRES 8 B 204 GLY VAL VAL THR ALA PRO VAL TYR CYS THR LYS ILE ALA SEQRES 9 B 204 SER ARG LEU VAL ARG THR PHE THR ASP ARG HIS GLY LEU SEQRES 10 B 204 LYS ASP LEU CYS ARG ASP LEU LEU GLY VAL GLU LEU SER SEQRES 11 B 204 LYS GLN GLN GLN SER SER ASP TRP GLY SER ASP GLN LEU SEQRES 12 B 204 THR PRO GLU GLN LEU ARG TYR ALA ALA SER ASP VAL LEU SEQRES 13 B 204 TYR LEU HIS ALA LEU LYS ALA LYS LEU ASP GLU MET LEU SEQRES 14 B 204 ARG ARG GLU GLY ARG GLU ALA LEU ALA GLN ALA CYS TYR SEQRES 15 B 204 ASP PHE LEU PRO THR ARG ALA ALA LEU ASP LEU GLY GLY SEQRES 16 B 204 TRP SER ASP LEU ASP ILE PHE ALA HIS HET MG A 301 1 HET MG A 302 1 HET CL A 303 1 HET CL A 304 1 HET MG B 301 1 HET MG B 302 1 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 3 MG 4(MG 2+) FORMUL 5 CL 2(CL 1-) FORMUL 9 HOH *596(H2 O) HELIX 1 AA1 ALA A 61 ASP A 70 1 10 HELIX 2 AA2 PHE A 79 GLY A 92 1 14 HELIX 3 AA3 THR A 101 ARG A 109 1 9 HELIX 4 AA4 GLY A 116 GLY A 126 1 11 HELIX 5 AA5 THR A 144 TYR A 157 1 14 HELIX 6 AA6 TYR A 157 GLY A 173 1 17 HELIX 7 AA7 ARG A 174 GLY A 195 1 22 HELIX 8 AA8 ALA B 61 ASP B 70 1 10 HELIX 9 AA9 PHE B 79 GLY B 92 1 14 HELIX 10 AB1 THR B 101 ARG B 109 1 9 HELIX 11 AB2 GLY B 116 GLY B 126 1 11 HELIX 12 AB3 THR B 144 TYR B 157 1 14 HELIX 13 AB4 TYR B 157 GLY B 173 1 17 HELIX 14 AB5 ARG B 174 GLY B 194 1 21 SHEET 1 AA1 6 ILE A 5 ASP A 8 0 SHEET 2 AA1 6 HIS A 50 GLN A 53 1 O LEU A 51 N ILE A 5 SHEET 3 AA1 6 LEU A 37 SER A 43 -1 N VAL A 40 O VAL A 52 SHEET 4 AA1 6 VAL A 20 THR A 27 -1 N ASP A 24 O GLN A 41 SHEET 5 AA1 6 LEU A 74 PHE A 77 1 O LEU A 76 N ILE A 23 SHEET 6 AA1 6 VAL A 98 CYS A 100 1 O TYR A 99 N PHE A 77 SHEET 1 AA2 6 ILE B 5 ASP B 8 0 SHEET 2 AA2 6 HIS B 50 GLN B 53 1 O LEU B 51 N ILE B 5 SHEET 3 AA2 6 LEU B 37 SER B 43 -1 N VAL B 40 O VAL B 52 SHEET 4 AA2 6 VAL B 20 THR B 27 -1 N ALA B 22 O SER B 43 SHEET 5 AA2 6 LEU B 74 PHE B 77 1 O LEU B 76 N ILE B 23 SHEET 6 AA2 6 VAL B 98 CYS B 100 1 O TYR B 99 N PHE B 77 LINK OD1 ASP A 24 MG MG A 301 1555 1555 2.15 LINK OD2 ASP A 24 MG MG A 301 1555 1555 2.86 LINK OE2 GLU A 26 MG MG A 302 1555 1555 2.25 LINK OD2 ASP A 154 MG MG A 302 1555 1555 2.21 LINK MG MG A 301 O HOH A 404 1555 1555 2.10 LINK MG MG A 301 O HOH A 421 1555 1555 2.10 LINK MG MG A 301 O HOH A 446 1555 1555 2.39 LINK MG MG A 301 O HOH A 554 1555 1555 2.26 LINK MG MG A 301 O HOH A 656 1555 1555 2.13 LINK MG MG A 302 O HOH A 446 1555 1555 2.33 LINK OD1 ASP B 24 MG MG B 301 1555 1555 2.02 LINK OD2 ASP B 24 MG MG B 302 1555 1555 2.55 LINK MG MG B 301 O HOH B 479 1555 1555 2.83 LINK MG MG B 301 O HOH B 651 1555 1555 2.58 LINK MG MG B 302 O HOH B 404 1555 1555 2.22 CISPEP 1 ALA A 96 PRO A 97 0 -5.41 CISPEP 2 ALA B 96 PRO B 97 0 -5.24 CRYST1 120.708 120.708 71.764 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008284 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008284 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013935 0.00000 MTRIX1 1 0.645681 -0.763606 0.001502 -21.35733 1 MTRIX2 1 -0.763606 -0.645682 -0.000692 -46.01054 1 MTRIX3 1 0.001498 -0.000700 -0.999999 59.86345 1 CONECT 166 3168 CONECT 167 3168 CONECT 183 3169 CONECT 1185 3169 CONECT 1751 3172 CONECT 1752 3173 CONECT 3168 166 167 3177 3194 CONECT 3168 3219 3327 3429 CONECT 3169 183 1185 3219 CONECT 3172 1751 3557 3729 CONECT 3173 1752 3482 CONECT 3177 3168 CONECT 3194 3168 CONECT 3219 3168 3169 CONECT 3327 3168 CONECT 3429 3168 CONECT 3482 3173 CONECT 3557 3172 CONECT 3729 3172 MASTER 515 0 6 14 12 0 0 9 3754 2 19 32 END