HEADER VIRUS LIKE PARTICLE 11-APR-25 9QVE TITLE SATELLITE TOBACCO NECROSIS VIRUS-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: COAT PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SATELLITE TOBACCO NECROSIS VIRUS 1; SOURCE 3 ORGANISM_TAXID: 12445; SOURCE 4 EXPRESSION_SYSTEM: NICOTIANA BENTHAMIANA; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 4100; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PEFF PVX-BASED VECTOR KEYWDS SSRNA PLANT VIRUS, ICOSAHEDRAL, RNA PACKAGING, VIRUS LIKE PARTICLE EXPDTA ELECTRON MICROSCOPY AUTHOR K.SAUNDERS,S.SHAH,H.PEYRET,Y.MESHCHERIAKOVA,J.RICHARDSON, AUTHOR 2 S.ELTSCHKNER,D.M.LAWSON,G.LOMONOSSOFF REVDAT 1 07-MAY-25 9QVE 0 JRNL AUTH K.SAUNDERS,S.SHAH,H.PEYRET,Y.MESHCHERIAKOVA,J.RICHARDSON, JRNL AUTH 2 S.ELTSCHKNER,D.M.LAWSON,G.LOMONOSSOFF JRNL TITL THE SPECIFICITY OF RNA PACKAGING IN ISOMETRIC RNA PLANT JRNL TITL 2 VIRUSES IS PRINCIPALLY DETERMINED BY REPLICATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, EPU, CRYOSPARC, UCSF REMARK 3 CHIMERAX, COOT, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC, CRYOSPARC, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 2BUK REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : CROSS-CORRELATION COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : 43.000 REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.770 REMARK 3 NUMBER OF PARTICLES : 207142 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9QVE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-APR-25. REMARK 100 THE DEPOSITION ID IS D_1292147078. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : SATELLITE TOBACCO NECROSIS REMARK 245 VIRUS 1 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 2.92 REMARK 245 SAMPLE SUPPORT DETAILS : GLOW DISCHARGED FOR 60 SECONDS REMARK 245 AT 8 MA USING AN ACE 200 (LEICA REMARK 245 MICROSYSTEMS) REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : THE COMPLETE STNV COAT PROTEIN REMARK 245 GENE WAS INSERTED INTO THE PEFF VECTOR. EXPRESSION WAS INITIATED REMARK 245 BY INFILTRATING LEAVES OF NICOTIANA BENTHAMIANA WITH SUSPENSIONS REMARK 245 OF AGROBACTERIUM TUMEFACIENS STRAIN LBA4404 HARBOURING THIS REMARK 245 VECTOR. REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 985 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS TALOS F200C REMARK 245 DETECTOR TYPE : TFS FALCON 4I (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 700.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1800.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 150000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 60-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 60-MERIC REMARK 350 SOFTWARE USED: UCSF CHIMERA 1.17.3_B42480. REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.809017 -0.500000 0.309017 470.00000 REMARK 350 BIOMT2 2 -0.500000 0.309017 -0.809017 470.00000 REMARK 350 BIOMT3 2 0.309017 -0.809017 -0.500000 470.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 470.00000 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 470.00000 REMARK 350 BIOMT1 4 0.809017 -0.500000 -0.309017 235.00000 REMARK 350 BIOMT2 4 -0.500000 -0.309017 -0.809017 615.23799 REMARK 350 BIOMT3 4 0.309017 0.809017 -0.500000 89.76201 REMARK 350 BIOMT1 5 0.500000 0.309017 -0.809017 235.00000 REMARK 350 BIOMT2 5 -0.309017 -0.809017 -0.500000 615.23799 REMARK 350 BIOMT3 5 -0.809017 0.500000 -0.309017 380.23799 REMARK 350 BIOMT1 6 -0.309017 -0.809017 -0.500000 615.23799 REMARK 350 BIOMT2 6 -0.809017 0.500000 -0.309017 380.23799 REMARK 350 BIOMT3 6 0.500000 0.309017 -0.809017 235.00000 REMARK 350 BIOMT1 7 -0.809017 0.500000 -0.309017 380.23799 REMARK 350 BIOMT2 7 0.500000 0.309017 -0.809017 235.00000 REMARK 350 BIOMT3 7 -0.309017 -0.809017 -0.500000 615.23799 REMARK 350 BIOMT1 8 -0.809017 -0.500000 -0.309017 615.23799 REMARK 350 BIOMT2 8 0.500000 -0.309017 -0.809017 380.23799 REMARK 350 BIOMT3 8 0.309017 -0.809017 0.500000 235.00000 REMARK 350 BIOMT1 9 -0.309017 0.809017 -0.500000 235.00000 REMARK 350 BIOMT2 9 -0.809017 -0.500000 -0.309017 615.23799 REMARK 350 BIOMT3 9 -0.500000 0.309017 0.809017 89.76201 REMARK 350 BIOMT1 10 0.500000 -0.309017 -0.809017 380.23799 REMARK 350 BIOMT2 10 -0.309017 0.809017 -0.500000 235.00000 REMARK 350 BIOMT3 10 0.809017 0.500000 0.309017 -145.23799 REMARK 350 BIOMT1 11 0.000000 0.000000 -1.000000 470.00000 REMARK 350 BIOMT2 11 -1.000000 0.000000 0.000000 470.00000 REMARK 350 BIOMT3 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 12 -0.500000 -0.309017 -0.809017 615.23799 REMARK 350 BIOMT2 12 0.309017 0.809017 -0.500000 89.76201 REMARK 350 BIOMT3 12 0.809017 -0.500000 -0.309017 235.00000 REMARK 350 BIOMT1 13 -0.500000 0.309017 -0.809017 470.00000 REMARK 350 BIOMT2 13 0.309017 -0.809017 -0.500000 470.00000 REMARK 350 BIOMT3 13 -0.809017 -0.500000 0.309017 470.00000 REMARK 350 BIOMT1 14 -0.309017 -0.809017 -0.500000 615.23799 REMARK 350 BIOMT2 14 0.809017 -0.500000 0.309017 89.76201 REMARK 350 BIOMT3 14 -0.500000 -0.309017 0.809017 235.00000 REMARK 350 BIOMT1 15 -0.809017 0.500000 -0.309017 380.23799 REMARK 350 BIOMT2 15 -0.500000 -0.309017 0.809017 235.00000 REMARK 350 BIOMT3 15 0.309017 0.809017 0.500000 -145.23799 REMARK 350 BIOMT1 16 0.500000 0.309017 -0.809017 235.00000 REMARK 350 BIOMT2 16 0.309017 0.809017 0.500000 -145.23799 REMARK 350 BIOMT3 16 0.809017 -0.500000 0.309017 89.76201 REMARK 350 BIOMT1 17 -0.500000 0.309017 -0.809017 470.00000 REMARK 350 BIOMT2 17 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 17 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 18 0.000000 0.000000 -1.000000 470.00000 REMARK 350 BIOMT2 18 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 18 0.000000 -1.000000 0.000000 470.00000 REMARK 350 BIOMT1 19 -0.500000 -0.309017 -0.809017 615.23799 REMARK 350 BIOMT2 19 -0.309017 -0.809017 0.500000 380.23799 REMARK 350 BIOMT3 19 -0.809017 0.500000 0.309017 235.00000 REMARK 350 BIOMT1 20 0.000000 -1.000000 0.000000 470.00000 REMARK 350 BIOMT2 20 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 20 -1.000000 0.000000 0.000000 470.00000 REMARK 350 BIOMT1 21 -0.809017 0.500000 0.309017 235.00000 REMARK 350 BIOMT2 21 0.500000 0.309017 0.809017 -145.23799 REMARK 350 BIOMT3 21 0.309017 0.809017 -0.500000 89.76201 REMARK 350 BIOMT1 22 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 22 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 22 0.309017 -0.809017 -0.500000 470.00000 REMARK 350 BIOMT1 23 -0.309017 0.809017 -0.500000 235.00000 REMARK 350 BIOMT2 23 0.809017 0.500000 0.309017 -145.23799 REMARK 350 BIOMT3 23 0.500000 -0.309017 -0.809017 380.23799 REMARK 350 BIOMT1 24 0.500000 -0.309017 -0.809017 380.23799 REMARK 350 BIOMT2 24 0.309017 -0.809017 0.500000 235.00000 REMARK 350 BIOMT3 24 -0.809017 -0.500000 -0.309017 615.23799 REMARK 350 BIOMT1 25 -0.809017 -0.500000 -0.309017 615.23799 REMARK 350 BIOMT2 25 -0.500000 0.309017 0.809017 89.76201 REMARK 350 BIOMT3 25 -0.309017 0.809017 -0.500000 235.00000 REMARK 350 BIOMT1 26 -0.309017 -0.809017 0.500000 380.23799 REMARK 350 BIOMT2 26 -0.809017 0.500000 0.309017 235.00000 REMARK 350 BIOMT3 26 -0.500000 -0.309017 -0.809017 615.23799 REMARK 350 BIOMT1 27 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 27 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 27 -0.500000 0.309017 -0.809017 470.00000 REMARK 350 BIOMT1 28 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 28 0.000000 -1.000000 0.000000 470.00000 REMARK 350 BIOMT3 28 0.000000 0.000000 -1.000000 470.00000 REMARK 350 BIOMT1 29 0.309017 0.809017 -0.500000 89.76201 REMARK 350 BIOMT2 29 0.809017 -0.500000 -0.309017 235.00000 REMARK 350 BIOMT3 29 -0.500000 -0.309017 -0.809017 615.23799 REMARK 350 BIOMT1 30 0.309017 -0.809017 -0.500000 470.00000 REMARK 350 BIOMT2 30 -0.809017 -0.500000 0.309017 470.00000 REMARK 350 BIOMT3 30 -0.500000 0.309017 -0.809017 470.00000 REMARK 350 BIOMT1 31 -1.000000 0.000000 0.000000 470.00000 REMARK 350 BIOMT2 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 31 0.000000 0.000000 -1.000000 470.00000 REMARK 350 BIOMT1 32 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 32 -0.500000 0.309017 -0.809017 470.00000 REMARK 350 BIOMT3 32 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 33 0.000000 -1.000000 0.000000 470.00000 REMARK 350 BIOMT2 33 0.000000 0.000000 -1.000000 470.00000 REMARK 350 BIOMT3 33 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 34 -0.809017 0.500000 0.309017 235.00000 REMARK 350 BIOMT2 34 -0.500000 -0.309017 -0.809017 615.23799 REMARK 350 BIOMT3 34 -0.309017 -0.809017 0.500000 380.23799 REMARK 350 BIOMT1 35 -0.500000 -0.309017 0.809017 235.00000 REMARK 350 BIOMT2 35 -0.309017 -0.809017 -0.500000 615.23799 REMARK 350 BIOMT3 35 0.809017 -0.500000 0.309017 89.76201 REMARK 350 BIOMT1 36 0.309017 0.809017 0.500000 -145.23799 REMARK 350 BIOMT2 36 -0.809017 0.500000 -0.309017 380.23799 REMARK 350 BIOMT3 36 -0.500000 -0.309017 0.809017 235.00000 REMARK 350 BIOMT1 37 0.809017 -0.500000 0.309017 89.76201 REMARK 350 BIOMT2 37 0.500000 0.309017 -0.809017 235.00000 REMARK 350 BIOMT3 37 0.309017 0.809017 0.500000 -145.23799 REMARK 350 BIOMT1 38 0.809017 0.500000 0.309017 -145.23799 REMARK 350 BIOMT2 38 0.500000 -0.309017 -0.809017 380.23799 REMARK 350 BIOMT3 38 -0.309017 0.809017 -0.500000 235.00000 REMARK 350 BIOMT1 39 0.309017 -0.809017 0.500000 235.00000 REMARK 350 BIOMT2 39 -0.809017 -0.500000 -0.309017 615.23799 REMARK 350 BIOMT3 39 0.500000 -0.309017 -0.809017 380.23799 REMARK 350 BIOMT1 40 -0.500000 0.309017 0.809017 89.76201 REMARK 350 BIOMT2 40 -0.309017 0.809017 -0.500000 235.00000 REMARK 350 BIOMT3 40 -0.809017 -0.500000 -0.309017 615.23799 REMARK 350 BIOMT1 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 41 -1.000000 0.000000 0.000000 470.00000 REMARK 350 BIOMT3 41 0.000000 -1.000000 0.000000 470.00000 REMARK 350 BIOMT1 42 0.500000 0.309017 0.809017 -145.23799 REMARK 350 BIOMT2 42 0.309017 0.809017 -0.500000 89.76201 REMARK 350 BIOMT3 42 -0.809017 0.500000 0.309017 235.00000 REMARK 350 BIOMT1 43 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 43 0.309017 -0.809017 -0.500000 470.00000 REMARK 350 BIOMT3 43 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 44 0.309017 0.809017 0.500000 -145.23799 REMARK 350 BIOMT2 44 0.809017 -0.500000 0.309017 89.76201 REMARK 350 BIOMT3 44 0.500000 0.309017 -0.809017 235.00000 REMARK 350 BIOMT1 45 0.809017 -0.500000 0.309017 89.76201 REMARK 350 BIOMT2 45 -0.500000 -0.309017 0.809017 235.00000 REMARK 350 BIOMT3 45 -0.309017 -0.809017 -0.500000 615.23799 REMARK 350 BIOMT1 46 -0.500000 -0.309017 0.809017 235.00000 REMARK 350 BIOMT2 46 0.309017 0.809017 0.500000 -145.23799 REMARK 350 BIOMT3 46 -0.809017 0.500000 -0.309017 380.23799 REMARK 350 BIOMT1 47 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 47 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 47 -0.809017 -0.500000 0.309017 470.00000 REMARK 350 BIOMT1 48 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 48 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 48 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 49 0.500000 0.309017 0.809017 -145.23799 REMARK 350 BIOMT2 49 -0.309017 -0.809017 0.500000 380.23799 REMARK 350 BIOMT3 49 0.809017 -0.500000 -0.309017 235.00000 REMARK 350 BIOMT1 50 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 50 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 50 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 51 0.809017 -0.500000 -0.309017 235.00000 REMARK 350 BIOMT2 51 0.500000 0.309017 0.809017 -145.23799 REMARK 350 BIOMT3 51 -0.309017 -0.809017 0.500000 380.23799 REMARK 350 BIOMT1 52 -0.809017 -0.500000 0.309017 470.00000 REMARK 350 BIOMT2 52 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 52 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 53 0.309017 -0.809017 0.500000 235.00000 REMARK 350 BIOMT2 53 0.809017 0.500000 0.309017 -145.23799 REMARK 350 BIOMT3 53 -0.500000 0.309017 0.809017 89.76201 REMARK 350 BIOMT1 54 -0.500000 0.309017 0.809017 89.76201 REMARK 350 BIOMT2 54 0.309017 -0.809017 0.500000 235.00000 REMARK 350 BIOMT3 54 0.809017 0.500000 0.309017 -145.23799 REMARK 350 BIOMT1 55 0.809017 0.500000 0.309017 -145.23799 REMARK 350 BIOMT2 55 -0.500000 0.309017 0.809017 89.76201 REMARK 350 BIOMT3 55 0.309017 -0.809017 0.500000 235.00000 REMARK 350 BIOMT1 56 0.309017 0.809017 -0.500000 89.76201 REMARK 350 BIOMT2 56 -0.809017 0.500000 0.309017 235.00000 REMARK 350 BIOMT3 56 0.500000 0.309017 0.809017 -145.23799 REMARK 350 BIOMT1 57 0.309017 -0.809017 -0.500000 470.00000 REMARK 350 BIOMT2 57 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 57 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 58 -1.000000 0.000000 0.000000 470.00000 REMARK 350 BIOMT2 58 0.000000 -1.000000 0.000000 470.00000 REMARK 350 BIOMT3 58 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 59 -0.309017 -0.809017 0.500000 380.23799 REMARK 350 BIOMT2 59 0.809017 -0.500000 -0.309017 235.00000 REMARK 350 BIOMT3 59 0.500000 0.309017 0.809017 -145.23799 REMARK 350 BIOMT1 60 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 60 -0.809017 -0.500000 0.309017 470.00000 REMARK 350 BIOMT3 60 0.500000 -0.309017 0.809017 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 GLN A 4 REMARK 465 GLN A 5 REMARK 465 ASN A 6 REMARK 465 ASN A 7 REMARK 465 ARG A 8 REMARK 465 ARG A 9 REMARK 465 LYS A 10 REMARK 465 SER A 11 REMARK 465 ALA A 12 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 52 NH1 ARG A 61 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 81 -63.73 72.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 56 OD1 REMARK 620 2 ASP A 56 OD2 47.0 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-53395 RELATED DB: EMDB REMARK 900 SATELLITE TOBACCO NECROSIS VIRUS-1 DBREF 9QVE A 1 196 UNP P03606 CAPSD_STNV1 1 196 SEQRES 1 A 196 MET ALA LYS GLN GLN ASN ASN ARG ARG LYS SER ALA THR SEQRES 2 A 196 MET ARG ALA VAL LYS ARG MET ILE ASN THR HIS LEU GLU SEQRES 3 A 196 HIS LYS ARG PHE ALA LEU ILE ASN SER GLY ASN THR ASN SEQRES 4 A 196 ALA THR ALA GLY THR VAL GLN ASN LEU SER ASN GLY ILE SEQRES 5 A 196 ILE GLN GLY ASP ASP ILE ASN GLN ARG SER GLY ASP GLN SEQRES 6 A 196 VAL ARG ILE VAL SER HIS LYS LEU HIS VAL ARG GLY THR SEQRES 7 A 196 ALA ILE THR VAL SER GLN THR PHE ARG PHE ILE TRP PHE SEQRES 8 A 196 ARG ASP ASN MET ASN ARG GLY THR THR PRO THR VAL LEU SEQRES 9 A 196 GLU VAL LEU ASN THR ALA ASN PHE MET SER GLN TYR ASN SEQRES 10 A 196 PRO ILE THR LEU GLN GLN LYS ARG PHE THR ILE LEU LYS SEQRES 11 A 196 ASP VAL THR LEU ASN CYS SER LEU THR GLY GLU SER ILE SEQRES 12 A 196 LYS ASP ARG ILE ILE ASN LEU PRO GLY GLN LEU VAL ASN SEQRES 13 A 196 TYR ASN GLY ALA THR ALA VAL ALA ALA SER ASN GLY PRO SEQRES 14 A 196 GLY ALA ILE PHE MET LEU GLN ILE GLY ASP SER LEU VAL SEQRES 15 A 196 GLY LEU TRP ASP SER SER TYR GLU ALA VAL TYR THR ASP SEQRES 16 A 196 ALA HET MG A 301 1 HET MG A 302 1 HET MG A 303 1 HETNAM MG MAGNESIUM ION FORMUL 2 MG 3(MG 2+) HELIX 1 AA1 THR A 13 THR A 23 1 11 HELIX 2 AA2 SER A 49 ILE A 52 5 4 HELIX 3 AA3 ASN A 117 GLN A 123 1 7 HELIX 4 AA4 VAL A 163 ASN A 167 5 5 SHEET 1 AA1 4 HIS A 27 THR A 38 0 SHEET 2 AA1 4 LEU A 184 THR A 194 -1 O TRP A 185 N ASN A 37 SHEET 3 AA1 4 GLN A 65 THR A 78 -1 N SER A 70 O VAL A 192 SHEET 4 AA1 4 ILE A 143 PRO A 151 -1 O ILE A 148 N LEU A 73 SHEET 1 AA2 4 HIS A 27 THR A 38 0 SHEET 2 AA2 4 LEU A 184 THR A 194 -1 O TRP A 185 N ASN A 37 SHEET 3 AA2 4 GLN A 65 THR A 78 -1 N SER A 70 O VAL A 192 SHEET 4 AA2 4 LEU A 154 ASN A 156 -1 O VAL A 155 N VAL A 66 SHEET 1 AA3 4 THR A 44 ASN A 47 0 SHEET 2 AA3 4 ALA A 171 GLY A 178 -1 O MET A 174 N GLN A 46 SHEET 3 AA3 4 GLN A 84 ASP A 93 -1 N ILE A 89 O LEU A 175 SHEET 4 AA3 4 PHE A 126 CYS A 136 -1 O LEU A 134 N PHE A 86 SHEET 1 AA4 2 ILE A 53 GLN A 54 0 SHEET 2 AA4 2 GLN A 60 ARG A 61 1 O ARG A 61 N ILE A 53 LINK OE1 GLU A 26 MG MG A 301 1555 1555 2.52 LINK OD1 ASP A 56 MG MG A 302 1555 1555 3.00 LINK OD2 ASP A 56 MG MG A 302 1555 1555 2.11 LINK O THR A 139 MG MG A 303 1555 1555 2.41 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000