HEADER TRANSFERASE 13-APR-25 9QW0 TITLE NOSTOC SP. 3335MG GT108 FAMILY ENZYME D90A MUTANT COMPLEX WITH OCTYL- TITLE 2 MANNOTETRAOSE AND BIS-TRIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GT108 FAMILY ENZYME; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.1.374; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: D90A MUTANT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOSTOC; SOURCE 3 ORGANISM_TAXID: 1177; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GT108, CARBOHYDRATE-ACTIVE ENZYME, GLYCOBIOLOGY, 3-D STRUCTURE, KEYWDS 2 PHOSPHORYLASE, ENZYME MECHANISM, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.MALES,J.E.RALTON,A.KAUR,K.BUTRISS,L.F.SOBALA,M.SHARMA,O.V.MOROZ, AUTHOR 2 S.J.WILLIAMS,M.J.MCCONVILLE,G.J.DAVIES REVDAT 1 28-OCT-26 9QW0 0 JRNL AUTH A.MALES,J.E.RALTON,A.KAUR,K.BUTRISS,L.F.SOBALA,M.SHARMA, JRNL AUTH 2 O.V.MOROZ,S.J.WILLIAMS,M.J.MCCONVILLE,G.J.DAVIES JRNL TITL STRUCTURAL AND FUNCTIONAL INSIGHTS INTO GT108 ENZYMES REVEAL JRNL TITL 2 A CONSERVED PHOSPHORYLASE MECHANISM FOR BETA-1,2-MANNOGEN JRNL TITL 3 METABOLISM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 (REFMACAT 0.4.100) REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 57141 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.893 REMARK 3 FREE R VALUE TEST SET COUNT : 2796 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.58 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3891 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.3460 REMARK 3 BIN FREE R VALUE SET COUNT : 211 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2361 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 302 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.89400 REMARK 3 B22 (A**2) : 0.89400 REMARK 3 B33 (A**2) : -1.78900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.075 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.293 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2561 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2354 ; 0.003 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3495 ; 1.841 ; 1.811 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5407 ; 0.770 ; 1.746 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 321 ; 7.637 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 26 ; 6.954 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 359 ;13.218 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 377 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3097 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 635 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 444 ; 0.182 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 34 ; 0.192 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1181 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 276 ; 0.186 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1252 ; 2.981 ; 3.110 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1252 ; 2.974 ; 3.110 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1570 ; 4.289 ; 5.581 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1571 ; 4.288 ; 5.583 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1309 ; 3.946 ; 3.467 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1310 ; 3.945 ; 3.472 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1920 ; 5.999 ; 6.223 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1921 ; 5.998 ; 6.228 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9QW0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-APR-25. REMARK 100 THE DEPOSITION ID IS D_1292147133. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 5.8.0430 (REFMACAT REMARK 200 0.4.100) REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57215 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 65.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 25.60 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 8.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 65.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 21.30 REMARK 200 R MERGE FOR SHELL (I) : 0.02700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 72.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NACL, 0.1 M BIS-TRIS PH 6.5 AND REMARK 280 25% (W/V) PEG 3350; SOAKING IN 0.5 MM OCTYL-MANNOTETRAOSE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.73200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 65.63300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 65.63300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.59800 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 65.63300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 65.63300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 11.86600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 65.63300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 65.63300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.59800 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 65.63300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 65.63300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 11.86600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 23.73200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 750 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 755 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -15 REMARK 465 ASN A -14 REMARK 465 HIS A -13 REMARK 465 LYS A -12 REMARK 465 VAL A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 ILE A -4 REMARK 465 GLU A -3 REMARK 465 GLY A -2 REMARK 465 ARG A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 ARG A 311 REMARK 465 GLU A 312 REMARK 465 ASN A 313 REMARK 465 ALA A 314 REMARK 465 PRO A 315 REMARK 465 VAL A 316 REMARK 465 ASP A 317 REMARK 465 VAL A 318 REMARK 465 SER A 319 REMARK 465 GLN A 320 REMARK 465 LEU A 321 REMARK 465 ILE A 322 REMARK 465 GLY A 323 REMARK 465 GLU A 324 REMARK 465 PRO A 325 REMARK 465 GLN A 326 REMARK 465 ARG A 327 REMARK 465 LEU A 328 REMARK 465 GLN A 329 REMARK 465 ALA A 330 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 111 CB CG CD OE1 OE2 REMARK 470 GLU A 113 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 675 O HOH A 692 1.98 REMARK 500 O HOH A 556 O HOH A 611 2.05 REMARK 500 OD1 ASP A 249 O HOH A 501 2.07 REMARK 500 O HOH A 566 O HOH A 614 2.07 REMARK 500 O HOH A 745 O HOH A 762 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 125 CA - CB - CG ANGL. DEV. = 16.4 DEGREES REMARK 500 ASP A 125 CB - CG - OD1 ANGL. DEV. = 12.3 DEGREES REMARK 500 ASP A 125 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 294 -21.90 -148.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 251 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9QW0 A -15 330 PDB 9QW0 9QW0 -15 330 SEQRES 1 A 346 MET ASN HIS LYS VAL HIS HIS HIS HIS HIS HIS ILE GLU SEQRES 2 A 346 GLY ARG HIS MET HIS HIS ASP HIS ILE PRO ARG VAL LYS SEQRES 3 A 346 THR ARG HIS ALA ALA PHE ALA ALA ASP PRO PRO LYS GLY SEQRES 4 A 346 ARG THR GLY LYS LEU THR PHE ALA GLY VAL ASP GLY LEU SEQRES 5 A 346 ASP VAL TYR ASN ILE SER ALA PRO PHE ARG VAL GLY GLY SEQRES 6 A 346 ARG THR VAL ILE ALA GLY ARG VAL GLU ALA ARG ASP SER SEQRES 7 A 346 GLU HIS ALA THR ALA ILE PHE PHE GLU GLU ALA GLY GLY SEQRES 8 A 346 VAL TRP HIS PRO VAL ASP GLY ALA PRO ARG TYR ALA LEU SEQRES 9 A 346 GLN ALA PRO PHE VAL THR PHE ILE GLY GLY GLU LEU VAL SEQRES 10 A 346 PHE GLY GLY VAL GLU VAL ARG PHE GLY GLU GLY GLU PRO SEQRES 11 A 346 GLU TRP TRP THR VAL PHE TYR ARG GLY SER ASP LEU PHE SEQRES 12 A 346 ASP LEU LYS PRO PHE PHE ALA GLY PRO LEU GLY MET LYS SEQRES 13 A 346 ASP ILE ARG LEU CYS GLU LEU ALA ASP GLY ARG VAL ALA SEQRES 14 A 346 VAL PHE THR ARG PRO ARG GLY SER LYS GLY GLY ARG GLY SEQRES 15 A 346 THR ILE GLY TYR THR GLU VAL ALA SER LEU ASP ALA LEU SEQRES 16 A 346 THR VAL GLU ALA ILE ASP ALA ALA PRO MET LEU GLU GLY SEQRES 17 A 346 MET PHE HIS PRO LEU ASP TRP GLY GLY VAL ASN GLU ALA SEQRES 18 A 346 HIS LEU LEU ALA ASN GLY GLU ILE GLY LEU ILE ALA HIS SEQRES 19 A 346 VAL ALA TYR PHE GLU ASP ASP THR ILE HIS SER ALA ARG SEQRES 20 A 346 HIS TYR TYR ALA VAL SER PHE VAL PHE ASP PRO ALA SER SEQRES 21 A 346 ARG ALA TRP ARG ASP LEU ARG ILE LEU ALA GLY ARG ASP SEQRES 22 A 346 GLN PHE GLY PRO GLY GLU ALA LYS ARG PRO ASP LEU VAL SEQRES 23 A 346 ASP VAL VAL PHE SER SER GLY ILE GLU ARG ILE GLY ASP SEQRES 24 A 346 VAL THR ARG LEU TYR ALA GLY THR SER ASP ALA GLU ALA SEQRES 25 A 346 HIS TRP VAL GLU ILE GLY TYR PRO PHE ASP VAL PRO LEU SEQRES 26 A 346 ALA ARG GLU ASN ALA PRO VAL ASP VAL SER GLN LEU ILE SEQRES 27 A 346 GLY GLU PRO GLN ARG LEU GLN ALA HET BMA B 1 12 HET BMA B 2 11 HET BMA B 3 11 HET BTB A 401 14 HET PO4 A 402 5 HET BTB A 403 14 HET CL A 404 1 HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETNAM PO4 PHOSPHATE ION HETNAM CL CHLORIDE ION HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN BTB BIS-TRIS BUFFER FORMUL 2 BMA 3(C6 H12 O6) FORMUL 3 BTB 2(C8 H19 N O5) FORMUL 4 PO4 O4 P 3- FORMUL 6 CL CL 1- FORMUL 7 HOH *302(H2 O) HELIX 1 AA1 ARG A 8 ASP A 19 1 12 HELIX 2 AA2 SER A 175 LEU A 179 5 5 HELIX 3 AA3 THR A 180 ALA A 187 1 8 HELIX 4 AA4 GLY A 255 PHE A 259 5 5 HELIX 5 AA5 ARG A 266 VAL A 270 5 5 SHEET 1 AA1 4 THR A 25 LYS A 27 0 SHEET 2 AA1 4 GLU A 295 ILE A 301 -1 O TRP A 298 N GLY A 26 SHEET 3 AA1 4 VAL A 284 THR A 291 -1 N LEU A 287 O VAL A 299 SHEET 4 AA1 4 VAL A 273 ILE A 281 -1 N ILE A 281 O VAL A 284 SHEET 1 AA2 3 ASP A 37 TYR A 39 0 SHEET 2 AA2 3 ARG A 50 GLU A 58 -1 O ARG A 56 N TYR A 39 SHEET 3 AA2 3 PHE A 45 VAL A 47 -1 N PHE A 45 O VAL A 52 SHEET 1 AA3 4 ASP A 37 TYR A 39 0 SHEET 2 AA3 4 ARG A 50 GLU A 58 -1 O ARG A 56 N TYR A 39 SHEET 3 AA3 4 THR A 66 ALA A 73 -1 O PHE A 70 N ILE A 53 SHEET 4 AA3 4 VAL A 76 PRO A 79 -1 O HIS A 78 N GLU A 71 SHEET 1 AA4 4 GLN A 89 ILE A 96 0 SHEET 2 AA4 4 GLU A 99 ARG A 108 -1 O VAL A 101 N THR A 94 SHEET 3 AA4 4 GLU A 115 GLY A 123 -1 O TYR A 121 N PHE A 102 SHEET 4 AA4 4 LYS A 130 ALA A 134 -1 O PHE A 132 N PHE A 120 SHEET 1 AA5 3 ARG A 143 GLU A 146 0 SHEET 2 AA5 3 VAL A 152 THR A 156 -1 O ALA A 153 N CYS A 145 SHEET 3 AA5 3 GLY A 169 VAL A 173 -1 O THR A 171 N VAL A 154 SHEET 1 AA6 4 TRP A 199 LEU A 207 0 SHEET 2 AA6 4 ILE A 213 PHE A 222 -1 O GLY A 214 N HIS A 206 SHEET 3 AA6 4 ARG A 231 ASP A 241 -1 O PHE A 238 N LEU A 215 SHEET 4 AA6 4 ALA A 246 ALA A 254 -1 O LEU A 253 N ALA A 235 LINK O2 BMA B 1 C1 BMA B 2 1555 1555 1.40 LINK O2 BMA B 2 C1 BMA B 3 1555 1555 1.40 CRYST1 131.266 131.266 47.464 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007618 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007618 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021069 0.00000 CONECT 2420 2421 2426 2430 CONECT 2421 2420 2422 2427 CONECT 2422 2421 2423 2428 CONECT 2423 2422 2424 2429 CONECT 2424 2423 2425 2430 CONECT 2425 2424 2431 CONECT 2426 2420 CONECT 2427 2421 2432 CONECT 2428 2422 CONECT 2429 2423 CONECT 2430 2420 2424 CONECT 2431 2425 CONECT 2432 2427 2433 2441 CONECT 2433 2432 2434 2438 CONECT 2434 2433 2435 2439 CONECT 2435 2434 2436 2440 CONECT 2436 2435 2437 2441 CONECT 2437 2436 2442 CONECT 2438 2433 2443 CONECT 2439 2434 CONECT 2440 2435 CONECT 2441 2432 2436 CONECT 2442 2437 CONECT 2443 2438 2444 2452 CONECT 2444 2443 2445 2449 CONECT 2445 2444 2446 2450 CONECT 2446 2445 2447 2451 CONECT 2447 2446 2448 2452 CONECT 2448 2447 2453 CONECT 2449 2444 CONECT 2450 2445 CONECT 2451 2446 CONECT 2452 2443 2447 CONECT 2453 2448 CONECT 2454 2455 2456 CONECT 2455 2454 CONECT 2456 2454 2457 2459 2461 CONECT 2457 2456 2458 CONECT 2458 2457 CONECT 2459 2456 2460 CONECT 2460 2459 CONECT 2461 2456 2462 2465 CONECT 2462 2461 2463 CONECT 2463 2462 2464 CONECT 2464 2463 CONECT 2465 2461 2466 CONECT 2466 2465 2467 CONECT 2467 2466 CONECT 2468 2469 2470 2471 2472 CONECT 2469 2468 CONECT 2470 2468 CONECT 2471 2468 CONECT 2472 2468 CONECT 2473 2474 2475 CONECT 2474 2473 CONECT 2475 2473 2476 2478 2480 CONECT 2476 2475 2477 CONECT 2477 2476 CONECT 2478 2475 2479 CONECT 2479 2478 CONECT 2480 2475 2481 2484 CONECT 2481 2480 2482 CONECT 2482 2481 2483 CONECT 2483 2482 CONECT 2484 2480 2485 CONECT 2485 2484 2486 CONECT 2486 2485 MASTER 383 0 7 5 22 0 0 6 2731 1 67 27 END