HEADER TRANSFERASE 16-APR-25 9QY4 TITLE GT108 FAMILY ENZYME FROM CHLAMYDIA ABORTUS IN COMPLEX WITH MANNOSE-1- TITLE 2 PHOSPHATE (M1P) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GT108 ENZYME; COMPND 3 CHAIN: B, A; COMPND 4 EC: 2.4.1.374; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLAMYDIA ABORTUS; SOURCE 3 ORGANISM_TAXID: 83555; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GT108, CARBOHYDRATE-ACTIVE ENZYME, GLYCOBIOLOGY, 3-D STRUCTURE, KEYWDS 2 PHOSPHORYLASE, ENZYME MECHANISM, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.MALES,J.E.RALTON,A.KAUR,K.BUTRISS,L.F.SOBALA,M.SHARMA,O.V.MOROZ, AUTHOR 2 S.J.WILLIAMS,M.J.MCCONVILLE,G.J.DAVIES REVDAT 1 28-OCT-26 9QY4 0 JRNL AUTH A.MALES,J.E.RALTON,A.KAUR,K.BUTRISS,L.F.SOBALA,M.SHARMA, JRNL AUTH 2 O.V.MOROZ,S.J.WILLIAMS,M.J.MCCONVILLE,G.J.DAVIES JRNL TITL STRUCTURAL AND FUNCTIONAL INSIGHTS INTO GT108 ENZYMES REVEAL JRNL TITL 2 A CONSERVED PHOSPHORYLASE MECHANISM FOR BETA-1,2-MANNOGEN JRNL TITL 3 METABOLISM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 (REFMACAT 0.4.100) REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 81.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 78398 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.035 REMARK 3 FREE R VALUE TEST SET COUNT : 3947 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.68 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4741 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.3610 REMARK 3 BIN FREE R VALUE SET COUNT : 258 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4876 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 364 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.73000 REMARK 3 B22 (A**2) : -2.52800 REMARK 3 B33 (A**2) : 1.78300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.50500 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.104 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.103 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.438 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5042 ; 0.013 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4603 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6810 ; 2.009 ; 1.824 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10647 ; 0.702 ; 1.760 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 626 ; 7.475 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 32 ; 9.177 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 814 ;12.219 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 711 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6004 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1176 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 834 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 22 ; 0.223 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2445 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 310 ; 0.147 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2510 ; 4.306 ; 3.779 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2510 ; 4.301 ; 3.779 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3134 ; 5.320 ; 6.764 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3135 ; 5.320 ; 6.766 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2532 ; 5.305 ; 4.082 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2521 ; 5.246 ; 4.069 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3676 ; 7.220 ; 7.318 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3659 ; 7.172 ; 7.293 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : B A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 2 B 315 NULL REMARK 3 1 A 2 A 315 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9QY4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-APR-25. REMARK 100 THE DEPOSITION ID IS D_1292147225. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78480 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 163.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 9.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 163.0 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.03500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 43.70 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 5.8.0430 (REFMACAT 0.4.100) REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NH4CL, 0.1 M MES PH 5.8 AND 24% REMARK 280 (W/V) PEG 6000 SOAKING WITH 5MM M1P, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 81.52000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -15 REMARK 465 ASN B -14 REMARK 465 HIS B -13 REMARK 465 LYS B -12 REMARK 465 VAL B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 ILE B -4 REMARK 465 GLU B -3 REMARK 465 GLY B -2 REMARK 465 ARG B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLN B 316 REMARK 465 THR B 317 REMARK 465 LYS B 318 REMARK 465 SER B 319 REMARK 465 LYS B 320 REMARK 465 MET A -15 REMARK 465 ASN A -14 REMARK 465 HIS A -13 REMARK 465 LYS A -12 REMARK 465 VAL A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 ILE A -4 REMARK 465 GLU A -3 REMARK 465 GLY A -2 REMARK 465 ARG A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLN A 316 REMARK 465 THR A 317 REMARK 465 LYS A 318 REMARK 465 SER A 319 REMARK 465 LYS A 320 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 3 CG CD OE1 OE2 REMARK 470 LYS B 5 CG CD CE NZ REMARK 470 GLN B 116 CG CD OE1 NE2 REMARK 470 ARG B 117 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 118 CG CD OE1 OE2 REMARK 470 ARG B 232 CD NE CZ NH1 NH2 REMARK 470 ARG B 315 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 5 CG CD CE NZ REMARK 470 ASN A 65 CG OD1 ND2 REMARK 470 GLN A 116 CG CD OE1 NE2 REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 131 CD CE NZ REMARK 470 ARG A 232 CD NE CZ NH1 NH2 REMARK 470 ARG A 315 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 515 O HOH B 566 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU B 54 CB - CG - CD ANGL. DEV. = -18.7 DEGREES REMARK 500 ARG A 77 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 124 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 LEU A 197 CB - CG - CD2 ANGL. DEV. = 11.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 117 81.20 -174.20 REMARK 500 PHE B 139 -21.68 -140.46 REMARK 500 ALA B 299 -18.23 -143.77 REMARK 500 GLU B 314 -168.97 -110.18 REMARK 500 GLU A 3 -53.59 -120.50 REMARK 500 ARG A 117 81.74 -172.45 REMARK 500 GLU A 118 133.64 -31.62 REMARK 500 PHE A 139 -21.93 -142.05 REMARK 500 ALA A 299 -19.93 -144.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 80 0.08 SIDE CHAIN REMARK 500 ARG B 84 0.08 SIDE CHAIN REMARK 500 ARG B 172 0.08 SIDE CHAIN REMARK 500 ARG B 260 0.11 SIDE CHAIN REMARK 500 ARG A 260 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9QY4 B -15 320 PDB 9QY4 9QY4 -15 320 DBREF 9QY4 A -15 320 PDB 9QY4 9QY4 -15 320 SEQRES 1 B 336 MET ASN HIS LYS VAL HIS HIS HIS HIS HIS HIS ILE GLU SEQRES 2 B 336 GLY ARG HIS MET GLY GLU LEU LYS ASN SER GLY LEU LYS SEQRES 3 B 336 SER CYS SER VAL LEU LEU GLU ALA PHE ARG LYS GLY GLU SEQRES 4 B 336 SER LYS PRO TYR ASN ALA GLU LYS LEU LEU PHE GLY GLY SEQRES 5 B 336 VAL GLY ASP ARG ASP VAL TYR ASN ILE SER ALA PRO PHE SEQRES 6 B 336 GLU ASP ASP GLY GLU MET VAL ILE ALA GLY ARG VAL GLU SEQRES 7 B 336 GLU ARG ASN SER GLU ALA SER GLU ILE TYR PHE PHE VAL SEQRES 8 B 336 MET ARG ASP GLY ARG TRP VAL PRO ARG GLU GLY ALA PRO SEQRES 9 B 336 GLY PHE GLU LEU GLN ASP PRO PHE PHE THR LYS ILE SER SEQRES 10 B 336 GLY GLU LEU ILE PHE GLY GLY VAL GLU THR PHE PRO HIS SEQRES 11 B 336 PRO GLN ARG GLU GLY GLU LEU SER TRP ARG THR VAL PHE SEQRES 12 B 336 TYR ARG GLY LYS LYS VAL ALA ASP LEU LYS PRO PHE PHE SEQRES 13 B 336 SER GLY PRO ASP GLN MET LYS ASP LEU ARG LEU VAL GLN SEQRES 14 B 336 LEU GLN ASP GLY LYS ILE GLY ILE PHE THR ARG PRO GLN SEQRES 15 B 336 GLY ASP LYS GLY GLY ARG GLY LYS ILE GLY PHE THR LYS SEQRES 16 B 336 ILE ASN SER LEU ASP GLU LEU SER GLN GLU VAL VAL LEU SEQRES 17 B 336 GLN ALA PRO LEU LEU GLN GLY GLN PHE SER ASP GLU GLU SEQRES 18 B 336 TRP GLY GLY GLY ASN GLU VAL HIS LEU LEU SER ASN GLY SEQRES 19 B 336 LEU LEU GLY ILE LEU GLY HIS ILE ALA GLN PHE ASP GLU SEQRES 20 B 336 ARG GLY ASP ARG HIS TYR TYR PRO MET ILE PHE VAL PHE SEQRES 21 B 336 ASP PRO HIS THR GLU THR HIS SER ASP MET GLU ILE ILE SEQRES 22 B 336 ALA GLU ARG ALA ASN PHE VAL GLU GLY PRO ALA LYS ARG SEQRES 23 B 336 PRO ASP LEU VAL ASP VAL VAL PHE SER GLY GLY LEU ILE SEQRES 24 B 336 ARG HIS SER ASP GLY THR ALA ASP LEU TYR ALA GLY ILE SEQRES 25 B 336 SER ASP ALA GLU ALA GLN LYS VAL THR ILE LYS ASP PRO SEQRES 26 B 336 PHE ALA GLY TYR GLU ARG GLN THR LYS SER LYS SEQRES 1 A 336 MET ASN HIS LYS VAL HIS HIS HIS HIS HIS HIS ILE GLU SEQRES 2 A 336 GLY ARG HIS MET GLY GLU LEU LYS ASN SER GLY LEU LYS SEQRES 3 A 336 SER CYS SER VAL LEU LEU GLU ALA PHE ARG LYS GLY GLU SEQRES 4 A 336 SER LYS PRO TYR ASN ALA GLU LYS LEU LEU PHE GLY GLY SEQRES 5 A 336 VAL GLY ASP ARG ASP VAL TYR ASN ILE SER ALA PRO PHE SEQRES 6 A 336 GLU ASP ASP GLY GLU MET VAL ILE ALA GLY ARG VAL GLU SEQRES 7 A 336 GLU ARG ASN SER GLU ALA SER GLU ILE TYR PHE PHE VAL SEQRES 8 A 336 MET ARG ASP GLY ARG TRP VAL PRO ARG GLU GLY ALA PRO SEQRES 9 A 336 GLY PHE GLU LEU GLN ASP PRO PHE PHE THR LYS ILE SER SEQRES 10 A 336 GLY GLU LEU ILE PHE GLY GLY VAL GLU THR PHE PRO HIS SEQRES 11 A 336 PRO GLN ARG GLU GLY GLU LEU SER TRP ARG THR VAL PHE SEQRES 12 A 336 TYR ARG GLY LYS LYS VAL ALA ASP LEU LYS PRO PHE PHE SEQRES 13 A 336 SER GLY PRO ASP GLN MET LYS ASP LEU ARG LEU VAL GLN SEQRES 14 A 336 LEU GLN ASP GLY LYS ILE GLY ILE PHE THR ARG PRO GLN SEQRES 15 A 336 GLY ASP LYS GLY GLY ARG GLY LYS ILE GLY PHE THR LYS SEQRES 16 A 336 ILE ASN SER LEU ASP GLU LEU SER GLN GLU VAL VAL LEU SEQRES 17 A 336 GLN ALA PRO LEU LEU GLN GLY GLN PHE SER ASP GLU GLU SEQRES 18 A 336 TRP GLY GLY GLY ASN GLU VAL HIS LEU LEU SER ASN GLY SEQRES 19 A 336 LEU LEU GLY ILE LEU GLY HIS ILE ALA GLN PHE ASP GLU SEQRES 20 A 336 ARG GLY ASP ARG HIS TYR TYR PRO MET ILE PHE VAL PHE SEQRES 21 A 336 ASP PRO HIS THR GLU THR HIS SER ASP MET GLU ILE ILE SEQRES 22 A 336 ALA GLU ARG ALA ASN PHE VAL GLU GLY PRO ALA LYS ARG SEQRES 23 A 336 PRO ASP LEU VAL ASP VAL VAL PHE SER GLY GLY LEU ILE SEQRES 24 A 336 ARG HIS SER ASP GLY THR ALA ASP LEU TYR ALA GLY ILE SEQRES 25 A 336 SER ASP ALA GLU ALA GLN LYS VAL THR ILE LYS ASP PRO SEQRES 26 A 336 PHE ALA GLY TYR GLU ARG GLN THR LYS SER LYS HET PEG B 401 7 HET M1P B 402 16 HET PO4 B 403 5 HET M1P A 401 16 HET PO4 A 402 5 HET PO4 A 403 5 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM M1P 1-O-PHOSPHONO-ALPHA-D-MANNOPYRANOSE HETNAM PO4 PHOSPHATE ION HETSYN M1P ALPHA-D-MANNOSE 1-PHOSPHATE; 1-O-PHOSPHONO-ALPHA-D- HETSYN 2 M1P MANNOSE; 1-O-PHOSPHONO-D-MANNOSE; 1-O-PHOSPHONO- HETSYN 3 M1P MANNOSE FORMUL 3 PEG C4 H10 O3 FORMUL 4 M1P 2(C6 H13 O9 P) FORMUL 5 PO4 3(O4 P 3-) FORMUL 9 HOH *364(H2 O) HELIX 1 AA1 SER B 11 GLY B 22 1 12 HELIX 2 AA2 LYS B 132 LEU B 136 5 5 HELIX 3 AA3 SER B 182 LEU B 186 5 5 HELIX 4 AA4 SER B 187 GLN B 193 1 7 HELIX 5 AA5 GLU B 259 PHE B 263 5 5 HELIX 6 AA6 ARG B 270 VAL B 274 5 5 HELIX 7 AA7 PHE B 310 GLU B 314 5 5 HELIX 8 AA8 SER A 11 GLY A 22 1 12 HELIX 9 AA9 LYS A 132 LEU A 136 5 5 HELIX 10 AB1 SER A 182 LEU A 186 5 5 HELIX 11 AB2 SER A 187 ALA A 194 1 8 HELIX 12 AB3 GLU A 259 PHE A 263 5 5 HELIX 13 AB4 ARG A 270 VAL A 274 5 5 HELIX 14 AB5 PHE A 310 GLU A 314 5 5 SHEET 1 AA1 6 TYR B 27 LYS B 31 0 SHEET 2 AA1 6 GLU B 300 LYS B 307 -1 O THR B 305 N TYR B 27 SHEET 3 AA1 6 THR B 289 ILE B 296 -1 N LEU B 292 O VAL B 304 SHEET 4 AA1 6 ASP B 275 ARG B 284 -1 N GLY B 281 O TYR B 293 SHEET 5 AA1 6 ARG B 235 ASP B 245 1 N TYR B 237 O ASP B 275 SHEET 6 AA1 6 THR B 250 HIS B 251 -1 O THR B 250 N ASP B 245 SHEET 1 AA2 4 TRP B 206 LEU B 214 0 SHEET 2 AA2 4 LEU B 220 PHE B 229 -1 O LEU B 223 N GLU B 211 SHEET 3 AA2 4 ARG B 235 ASP B 245 -1 O PHE B 242 N ILE B 222 SHEET 4 AA2 4 GLU B 255 ILE B 256 -1 O GLU B 255 N ILE B 241 SHEET 1 AA3 3 ASP B 41 TYR B 43 0 SHEET 2 AA3 3 GLU B 54 GLU B 62 -1 O GLU B 62 N ASP B 41 SHEET 3 AA3 3 PHE B 49 ASP B 51 -1 N ASP B 51 O GLU B 54 SHEET 1 AA4 4 ASP B 41 TYR B 43 0 SHEET 2 AA4 4 GLU B 54 GLU B 62 -1 O GLU B 62 N ASP B 41 SHEET 3 AA4 4 GLU B 70 ARG B 77 -1 O PHE B 74 N ILE B 57 SHEET 4 AA4 4 ARG B 80 PRO B 83 -1 O VAL B 82 N VAL B 75 SHEET 1 AA5 4 GLN B 93 ILE B 100 0 SHEET 2 AA5 4 GLU B 103 PRO B 113 -1 O GLY B 107 N PHE B 96 SHEET 3 AA5 4 LEU B 121 GLY B 130 -1 O SER B 122 N PHE B 112 SHEET 4 AA5 4 LYS B 137 SER B 141 -1 O PHE B 140 N PHE B 127 SHEET 1 AA6 3 ARG B 150 GLN B 153 0 SHEET 2 AA6 3 ILE B 159 THR B 163 -1 O GLY B 160 N VAL B 152 SHEET 3 AA6 3 GLY B 176 ILE B 180 -1 O ILE B 180 N ILE B 159 SHEET 1 AA7 6 TYR A 27 LYS A 31 0 SHEET 2 AA7 6 GLU A 300 LYS A 307 -1 O THR A 305 N TYR A 27 SHEET 3 AA7 6 THR A 289 ILE A 296 -1 N LEU A 292 O VAL A 304 SHEET 4 AA7 6 ASP A 275 ARG A 284 -1 N GLY A 281 O TYR A 293 SHEET 5 AA7 6 ARG A 235 ASP A 245 1 N TYR A 237 O ASP A 275 SHEET 6 AA7 6 THR A 250 HIS A 251 -1 O THR A 250 N ASP A 245 SHEET 1 AA8 4 TRP A 206 LEU A 214 0 SHEET 2 AA8 4 LEU A 220 PHE A 229 -1 O LEU A 223 N GLU A 211 SHEET 3 AA8 4 ARG A 235 ASP A 245 -1 O PHE A 242 N ILE A 222 SHEET 4 AA8 4 GLU A 255 ILE A 256 -1 O GLU A 255 N ILE A 241 SHEET 1 AA9 3 ASP A 41 TYR A 43 0 SHEET 2 AA9 3 GLU A 54 GLU A 62 -1 O ARG A 60 N TYR A 43 SHEET 3 AA9 3 PHE A 49 ASP A 51 -1 N PHE A 49 O VAL A 56 SHEET 1 AB1 4 ASP A 41 TYR A 43 0 SHEET 2 AB1 4 GLU A 54 GLU A 62 -1 O ARG A 60 N TYR A 43 SHEET 3 AB1 4 GLU A 70 ARG A 77 -1 O PHE A 74 N ILE A 57 SHEET 4 AB1 4 ARG A 80 PRO A 83 -1 O ARG A 80 N ARG A 77 SHEET 1 AB2 4 GLN A 93 ILE A 100 0 SHEET 2 AB2 4 GLU A 103 PRO A 113 -1 O GLY A 107 N PHE A 96 SHEET 3 AB2 4 LEU A 121 GLY A 130 -1 O SER A 122 N PHE A 112 SHEET 4 AB2 4 LYS A 137 SER A 141 -1 O PHE A 140 N PHE A 127 SHEET 1 AB3 3 ARG A 150 GLN A 153 0 SHEET 2 AB3 3 ILE A 159 THR A 163 -1 O GLY A 160 N VAL A 152 SHEET 3 AB3 3 GLY A 176 ILE A 180 -1 O ILE A 180 N ILE A 159 CRYST1 48.182 163.040 51.165 90.00 117.34 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020755 0.000000 0.010731 0.00000 SCALE2 0.000000 0.006133 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022002 0.00000 CONECT 4879 4880 4881 CONECT 4880 4879 CONECT 4881 4879 4882 CONECT 4882 4881 4883 CONECT 4883 4882 4884 CONECT 4884 4883 4885 CONECT 4885 4884 CONECT 4886 4887 CONECT 4887 4886 4888 CONECT 4888 4887 4889 4900 CONECT 4889 4888 4890 CONECT 4890 4889 4891 4896 CONECT 4891 4890 4892 CONECT 4892 4891 4893 4894 4895 CONECT 4893 4892 CONECT 4894 4892 CONECT 4895 4892 CONECT 4896 4890 4897 4898 CONECT 4897 4896 CONECT 4898 4896 4899 4900 CONECT 4899 4898 CONECT 4900 4888 4898 4901 CONECT 4901 4900 CONECT 4902 4903 4904 4905 4906 CONECT 4903 4902 CONECT 4904 4902 CONECT 4905 4902 CONECT 4906 4902 CONECT 4907 4908 CONECT 4908 4907 4909 CONECT 4909 4908 4910 4921 CONECT 4910 4909 4911 CONECT 4911 4910 4912 4917 CONECT 4912 4911 4913 CONECT 4913 4912 4914 4915 4916 CONECT 4914 4913 CONECT 4915 4913 CONECT 4916 4913 CONECT 4917 4911 4918 4919 CONECT 4918 4917 CONECT 4919 4917 4920 4921 CONECT 4920 4919 CONECT 4921 4909 4919 4922 CONECT 4922 4921 CONECT 4923 4924 4925 4926 4927 CONECT 4924 4923 CONECT 4925 4923 CONECT 4926 4923 CONECT 4927 4923 CONECT 4928 4929 4930 4931 4932 CONECT 4929 4928 CONECT 4930 4928 CONECT 4931 4928 CONECT 4932 4928 MASTER 390 0 6 14 48 0 0 6 5294 2 54 52 END