HEADER HYDROLASE 17-APR-25 9QYE TITLE PARP9 MACRO DOMAIN 1 IN COMPLEX WITH ADPR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN MONO-ADP-RIBOSYLTRANSFERASE PARP9; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LIKE 9,ARTD9,B COMPND 5 AGGRESSIVE LYMPHOMA PROTEIN,POLY [ADP-RIBOSE] POLYMERASE 9,PARP-9; COMPND 6 EC: 2.4.2.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PARP9, BAL, BAL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS COMPLEX, ADPR, PARP9, MACRO DOMAIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.N.FOURKIOTIS,A.CHIKUNOVA,C.A.TSIKA,A.S.TSATSOULI,A.PERRAKIS, AUTHOR 2 A.G.SPYROULIAS REVDAT 1 28-MAY-25 9QYE 0 JRNL AUTH K.N.FOURKIOTIS,A.CHIKUNOVA,C.A.TSIKA,A.S.TSATSOULI, JRNL AUTH 2 A.PERRAKIS,A.G.SPYROULIAS JRNL TITL COMPARATIVE ANALYSIS OF HPARP9 MACRO DOMAINS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 46854 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2387 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.44 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.48 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3382 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.3110 REMARK 3 BIN FREE R VALUE SET COUNT : 221 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1496 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 245 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.65000 REMARK 3 B22 (A**2) : 0.65000 REMARK 3 B33 (A**2) : -2.11000 REMARK 3 B12 (A**2) : 0.32000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.051 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.051 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.769 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1618 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1593 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2206 ; 1.734 ; 1.821 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3672 ; 0.596 ; 1.754 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 206 ; 6.211 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 7 ;14.855 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 288 ;13.140 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 261 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1864 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 343 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 809 ; 4.679 ; 1.820 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 809 ; 4.616 ; 1.819 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1020 ; 6.484 ; 3.276 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1021 ; 6.489 ; 3.278 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 809 ; 8.506 ; 2.313 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 810 ; 8.501 ; 2.312 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1187 ;12.021 ; 4.033 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1837 ;18.894 ;20.820 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1838 ;18.889 ;20.830 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3211 ; 3.876 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 9QYE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-APR-25. REMARK 100 THE DEPOSITION ID IS D_1292143889. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9655 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49251 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.440 REMARK 200 RESOLUTION RANGE LOW (A) : 45.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M IMIDAZOLE/MES BUFFER, 20% V/V PEG REMARK 280 500MME, 10% W/V PEG 20000, 0.12M MONOSACCHARIDES MIX (0.2M D- REMARK 280 GLUCOSE; 0.2M D-MANNOSE; 0.2M D-GALACTOSE; 0.2M L-FUCOSE; 0.2M D- REMARK 280 XYLOSE; 0.2M N-ACETYL-D-GLUCOSAMINE), PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.56950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.26811 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.34933 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 38.56950 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 22.26811 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 41.34933 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 38.56950 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 22.26811 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.34933 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.53622 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 82.69867 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 44.53622 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 82.69867 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 44.53622 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 82.69867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 98 REMARK 465 ALA A 99 REMARK 465 MET A 100 REMARK 465 GLY A 101 REMARK 465 GLY A 102 REMARK 465 ASN A 103 REMARK 465 SER A 104 REMARK 465 LYS A 105 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 163 CD GLU A 163 OE1 0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 200 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 205 55.87 -142.75 REMARK 500 SER A 240 -8.02 81.46 REMARK 500 SER A 240 -8.02 83.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 200 0.16 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 744 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 745 DISTANCE = 7.33 ANGSTROMS DBREF 9QYE A 102 300 UNP Q8IXQ6 PARP9_HUMAN 102 300 SEQADV 9QYE GLY A 98 UNP Q8IXQ6 EXPRESSION TAG SEQADV 9QYE ALA A 99 UNP Q8IXQ6 EXPRESSION TAG SEQADV 9QYE MET A 100 UNP Q8IXQ6 EXPRESSION TAG SEQADV 9QYE GLY A 101 UNP Q8IXQ6 EXPRESSION TAG SEQRES 1 A 203 GLY ALA MET GLY GLY ASN SER LYS SER LEU GLN VAL PHE SEQRES 2 A 203 ARG LYS MET LEU THR PRO ARG ILE GLU LEU SER VAL TRP SEQRES 3 A 203 LYS ASP ASP LEU THR THR HIS ALA VAL ASP ALA VAL VAL SEQRES 4 A 203 ASN ALA ALA ASN GLU ASP LEU LEU HIS GLY GLY GLY LEU SEQRES 5 A 203 ALA LEU ALA LEU VAL LYS ALA GLY GLY PHE GLU ILE GLN SEQRES 6 A 203 GLU GLU SER LYS GLN PHE VAL ALA ARG TYR GLY LYS VAL SEQRES 7 A 203 SER ALA GLY GLU ILE ALA VAL THR GLY ALA GLY ARG LEU SEQRES 8 A 203 PRO CYS LYS GLN ILE ILE HIS ALA VAL GLY PRO ARG TRP SEQRES 9 A 203 MET GLU TRP ASP LYS GLN GLY CYS THR GLY LYS LEU GLN SEQRES 10 A 203 ARG ALA ILE VAL SER ILE LEU ASN TYR VAL ILE TYR LYS SEQRES 11 A 203 ASN THR HIS ILE LYS THR VAL ALA ILE PRO ALA LEU SER SEQRES 12 A 203 SER GLY ILE PHE GLN PHE PRO LEU ASN LEU CYS THR LYS SEQRES 13 A 203 THR ILE VAL GLU THR ILE ARG VAL SER LEU GLN GLY LYS SEQRES 14 A 203 PRO MET MET SER ASN LEU LYS GLU ILE HIS LEU VAL SER SEQRES 15 A 203 ASN GLU ASP PRO THR VAL ALA ALA PHE LYS ALA ALA SER SEQRES 16 A 203 GLU PHE ILE LEU GLY LYS SER GLU HET AR6 A 401 36 HETNAM AR6 [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY- HETNAM 2 AR6 OXOLAN-2-YL]METHYL[HYDROXY-[[(2R,3S,4R,5S)-3,4,5- HETNAM 3 AR6 TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN HETNAM 4 AR6 PHOSPHATE HETSYN AR6 ADENOSINE-5-DIPHOSPHORIBOSE FORMUL 2 AR6 C15 H23 N5 O14 P2 FORMUL 3 HOH *245(H2 O) HELIX 1 AA1 GLY A 147 GLY A 158 1 12 HELIX 2 AA2 PHE A 159 GLY A 173 1 15 HELIX 3 AA3 MET A 202 TRP A 204 5 3 HELIX 4 AA4 ASP A 205 LYS A 227 1 23 HELIX 5 AA5 PRO A 247 GLN A 264 1 18 HELIX 6 AA6 GLU A 281 GLY A 297 1 17 SHEET 1 AA1 7 LEU A 107 MET A 113 0 SHEET 2 AA1 7 GLU A 119 LYS A 124 -1 O LEU A 120 N LYS A 112 SHEET 3 AA1 7 GLU A 274 SER A 279 1 O LEU A 277 N SER A 121 SHEET 4 AA1 7 THR A 233 ILE A 236 1 N ILE A 236 O HIS A 276 SHEET 5 AA1 7 ALA A 134 ALA A 139 1 N VAL A 136 O ALA A 235 SHEET 6 AA1 7 GLN A 192 VAL A 197 1 O ALA A 196 N ALA A 139 SHEET 7 AA1 7 ILE A 180 GLY A 184 -1 N ALA A 181 O HIS A 195 CRYST1 77.139 77.139 124.048 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012964 0.007485 0.000000 0.00000 SCALE2 0.000000 0.014969 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008061 0.00000 CONECT 1548 1549 1553 CONECT 1549 1548 1550 CONECT 1550 1549 1551 CONECT 1551 1550 1552 1557 CONECT 1552 1551 1553 1555 CONECT 1553 1548 1552 1554 CONECT 1554 1553 CONECT 1555 1552 1556 CONECT 1556 1555 1557 CONECT 1557 1551 1556 1560 CONECT 1558 1561 1567 1573 1581 CONECT 1559 1562 1568 1573 1583 CONECT 1560 1557 1565 1577 CONECT 1561 1558 CONECT 1562 1559 CONECT 1563 1564 1569 1579 CONECT 1564 1563 CONECT 1565 1560 1566 1571 CONECT 1566 1565 CONECT 1567 1558 CONECT 1568 1559 CONECT 1569 1563 1570 1574 CONECT 1570 1569 CONECT 1571 1565 1572 1576 CONECT 1572 1571 CONECT 1573 1558 1559 CONECT 1574 1569 1575 1578 CONECT 1575 1574 CONECT 1576 1571 1577 1580 CONECT 1577 1560 1576 CONECT 1578 1574 1579 1582 CONECT 1579 1563 1578 CONECT 1580 1576 1581 CONECT 1581 1558 1580 CONECT 1582 1578 1583 CONECT 1583 1559 1582 MASTER 360 0 1 6 7 0 0 6 1777 1 36 16 END