HEADER HYDROLASE 22-APR-25 9QZ2 TITLE MINPP1 FROM BACTEROIDES THETAIOTAOMICRON A324D/E325N MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: MULTIPLE INOSITOL POLYPHOSPHATE PHOSPHATASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 2,3-BISPHOSPHOGLYCERATE 3-PHOSPHATASE; COMPND 5 EC: 3.1.3.62,3.1.3.80; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON VPI-5482; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 GENE: BT_4744; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS HISTIDINE PHOSPHATASE, PHYTASE, MUTANT, COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.W.H.LI,X.Y.SHANG,A.M.HEMMINGS REVDAT 1 14-MAY-25 9QZ2 0 JRNL AUTH M.SALMON,X.Y.SHANG,A.W.H.LI,A.M.HEMMINGS JRNL TITL A STRUCTURAL BASIS FOR THE STEREOSPECIFICITY OF MULTIPLE JRNL TITL 2 INOSITOL POLYPHOSPHATE PHOSPHATASES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 62315 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3156 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.6100 - 5.5400 0.93 2494 138 0.1628 0.1756 REMARK 3 2 5.5400 - 4.4000 0.99 2612 138 0.1543 0.1602 REMARK 3 3 4.4000 - 3.8500 0.98 2584 143 0.1590 0.1898 REMARK 3 4 3.8500 - 3.5000 0.96 2506 128 0.1686 0.2050 REMARK 3 5 3.5000 - 3.2500 0.95 2507 134 0.1837 0.2162 REMARK 3 6 3.2500 - 3.0600 0.95 2515 124 0.1943 0.2230 REMARK 3 7 3.0600 - 2.9000 0.96 2537 139 0.1940 0.2439 REMARK 3 8 2.9000 - 2.7800 0.98 2540 130 0.1944 0.2404 REMARK 3 9 2.7800 - 2.6700 0.97 2565 134 0.1890 0.2098 REMARK 3 10 2.6700 - 2.5800 0.99 2584 154 0.1931 0.2408 REMARK 3 11 2.5800 - 2.5000 0.99 2539 150 0.1956 0.2285 REMARK 3 12 2.5000 - 2.4300 0.98 2601 127 0.1974 0.2434 REMARK 3 13 2.4300 - 2.3600 0.99 2576 145 0.1967 0.2695 REMARK 3 14 2.3600 - 2.3100 0.99 2588 144 0.1914 0.2186 REMARK 3 15 2.3100 - 2.2500 0.99 2610 150 0.2075 0.2460 REMARK 3 16 2.2500 - 2.2000 0.99 2598 135 0.2092 0.2948 REMARK 3 17 2.2000 - 2.1600 1.00 2582 143 0.2337 0.2600 REMARK 3 18 2.1600 - 2.1200 0.99 2621 137 0.2315 0.2648 REMARK 3 19 2.1200 - 2.0800 0.99 2621 120 0.2397 0.2943 REMARK 3 20 2.0800 - 2.0500 1.00 2602 128 0.2536 0.3064 REMARK 3 21 2.0500 - 2.0100 0.99 2575 149 0.2699 0.3111 REMARK 3 22 2.0100 - 1.9800 0.99 2640 128 0.2817 0.3471 REMARK 3 23 1.9800 - 1.9500 0.99 2562 138 0.2961 0.3203 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.193 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.671 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6663 REMARK 3 ANGLE : 0.934 9022 REMARK 3 CHIRALITY : 0.055 961 REMARK 3 PLANARITY : 0.009 1146 REMARK 3 DIHEDRAL : 7.194 876 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 22 THROUGH 425) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6150 -0.7820 0.4028 REMARK 3 T TENSOR REMARK 3 T11: 0.1929 T22: 0.2826 REMARK 3 T33: 0.1627 T12: 0.0023 REMARK 3 T13: -0.0085 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.8762 L22: 1.0854 REMARK 3 L33: 0.7836 L12: 0.2206 REMARK 3 L13: -0.0496 L23: -0.2958 REMARK 3 S TENSOR REMARK 3 S11: 0.0171 S12: -0.0451 S13: -0.0561 REMARK 3 S21: -0.0216 S22: -0.0168 S23: 0.0598 REMARK 3 S31: 0.0271 S32: -0.0112 S33: -0.0014 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 21 THROUGH 425) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4820 19.5371 31.4771 REMARK 3 T TENSOR REMARK 3 T11: 0.1976 T22: 0.2900 REMARK 3 T33: 0.1960 T12: -0.0382 REMARK 3 T13: -0.0196 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 1.1983 L22: 1.1867 REMARK 3 L33: 1.4317 L12: -0.1548 REMARK 3 L13: 0.0165 L23: 0.3336 REMARK 3 S TENSOR REMARK 3 S11: -0.0122 S12: -0.0367 S13: 0.0910 REMARK 3 S21: 0.0581 S22: -0.0823 S23: 0.1496 REMARK 3 S31: -0.1087 S32: -0.1119 S33: 0.0831 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9QZ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-APR-25. REMARK 100 THE DEPOSITION ID IS D_1292147271. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9690 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62382 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 26.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.210 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE PH 5.0 18 % REMARK 280 (W/V) PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 58.95500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 LEU A 13 REMARK 465 VAL A 14 REMARK 465 PRO A 15 REMARK 465 ARG A 16 REMARK 465 GLY A 17 REMARK 465 SER A 18 REMARK 465 HIS A 19 REMARK 465 MET A 20 REMARK 465 ASP A 39 REMARK 465 SER A 40 REMARK 465 SER A 41 REMARK 465 ILE A 42 REMARK 465 THR A 43 REMARK 465 PHE A 44 REMARK 465 ARG A 45 REMARK 465 ASP A 46 REMARK 465 GLY A 47 REMARK 465 MET B 0 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 SER B 10 REMARK 465 SER B 11 REMARK 465 GLY B 12 REMARK 465 LEU B 13 REMARK 465 VAL B 14 REMARK 465 PRO B 15 REMARK 465 ARG B 16 REMARK 465 GLY B 17 REMARK 465 SER B 18 REMARK 465 HIS B 19 REMARK 465 MET B 20 REMARK 465 ASP B 39 REMARK 465 SER B 40 REMARK 465 SER B 41 REMARK 465 ILE B 42 REMARK 465 THR B 43 REMARK 465 PHE B 44 REMARK 465 ARG B 45 REMARK 465 ASP B 46 REMARK 465 GLY B 47 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 345 O HOH A 601 1.80 REMARK 500 O HOH B 675 O HOH B 688 1.81 REMARK 500 O HOH B 679 O HOH B 693 1.89 REMARK 500 O HOH A 651 O HOH A 700 1.91 REMARK 500 O HOH B 732 O HOH B 736 1.95 REMARK 500 O HOH A 736 O HOH A 743 1.99 REMARK 500 O HOH A 697 O HOH A 746 2.00 REMARK 500 O HOH A 731 O HOH B 656 2.01 REMARK 500 O HOH B 648 O HOH B 660 2.03 REMARK 500 ND2 ASN A 424 O HOH A 602 2.04 REMARK 500 O HOH A 657 O HOH A 727 2.05 REMARK 500 O HOH A 629 O HOH A 756 2.05 REMARK 500 O HOH A 721 O HOH A 733 2.06 REMARK 500 O HOH B 679 O HOH B 722 2.06 REMARK 500 NH1 ARG B 371 O HOH B 601 2.07 REMARK 500 O HOH A 617 O HOH A 725 2.09 REMARK 500 OD1 ASP A 347 O HOH A 603 2.10 REMARK 500 O HOH A 662 O HOH A 738 2.12 REMARK 500 OD1 ASP A 374 O HOH A 604 2.13 REMARK 500 OD2 ASP A 347 O HOH A 605 2.14 REMARK 500 O HOH A 655 O HOH A 749 2.14 REMARK 500 NE ARG A 99 O HOH A 606 2.16 REMARK 500 OE1 GLU A 74 O HOH A 607 2.17 REMARK 500 O3P NEP B 59 O HOH B 602 2.17 REMARK 500 NH2 ARG A 373 O HOH A 608 2.18 REMARK 500 O HOH B 640 O HOH B 718 2.19 REMARK 500 O HOH A 650 O HOH A 758 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 258 NH1 ARG B 376 1455 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 136 -129.47 47.81 REMARK 500 SER A 137 55.23 -113.29 REMARK 500 SER A 281 -146.77 -131.86 REMARK 500 ALA A 322 -141.97 -157.47 REMARK 500 LYS A 338 -14.08 71.59 REMARK 500 PRO A 391 38.66 -80.16 REMARK 500 ASN B 136 -133.08 51.24 REMARK 500 SER B 137 53.96 -104.93 REMARK 500 LYS B 197 36.48 -143.83 REMARK 500 GLN B 227 -19.54 -171.38 REMARK 500 LEU B 229 91.35 -60.09 REMARK 500 ASP B 230 -48.86 -8.89 REMARK 500 PRO B 253 45.84 -74.44 REMARK 500 SER B 281 -151.91 -127.12 REMARK 500 MET B 288 6.01 59.99 REMARK 500 ALA B 322 -134.73 -148.68 REMARK 500 LYS B 338 -15.97 88.98 REMARK 500 CYS B 396 53.35 -147.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 345 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FDT RELATED DB: PDB REMARK 900 WILD TYPE, COMPLEX WITH PHOSPHATE REMARK 900 RELATED ID: 4FDU RELATED DB: PDB REMARK 900 WILD TYPE, COMPLEX WITH INOSITOL HEXASULFATE REMARK 900 RELATED ID: 5CU7 RELATED DB: PDB REMARK 900 E325N MUTANT, COMPLEX WITH PHOSPHATE REMARK 900 RELATED ID: 5CX4 RELATED DB: PDB REMARK 900 A324D MUTANT, COMPLEX WITH PHOSPHATE DBREF 9QZ2 A 21 425 UNP Q89YI8 Q89YI8_BACTN 21 425 DBREF 9QZ2 B 21 425 UNP Q89YI8 Q89YI8_BACTN 21 425 SEQADV 9QZ2 MET A 0 UNP Q89YI8 INITIATING METHIONINE SEQADV 9QZ2 GLY A 1 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 SER A 2 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 SER A 3 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 HIS A 4 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 HIS A 5 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 HIS A 6 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 HIS A 7 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 HIS A 8 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 HIS A 9 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 SER A 10 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 SER A 11 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 GLY A 12 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 LEU A 13 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 VAL A 14 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 PRO A 15 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 ARG A 16 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 GLY A 17 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 SER A 18 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 HIS A 19 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 MET A 20 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 ASP A 324 UNP Q89YI8 ALA 324 ENGINEERED MUTATION SEQADV 9QZ2 ASN A 325 UNP Q89YI8 GLU 325 ENGINEERED MUTATION SEQADV 9QZ2 MET B 0 UNP Q89YI8 INITIATING METHIONINE SEQADV 9QZ2 GLY B 1 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 SER B 2 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 SER B 3 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 HIS B 4 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 HIS B 5 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 HIS B 6 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 HIS B 7 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 HIS B 8 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 HIS B 9 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 SER B 10 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 SER B 11 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 GLY B 12 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 LEU B 13 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 VAL B 14 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 PRO B 15 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 ARG B 16 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 GLY B 17 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 SER B 18 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 HIS B 19 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 MET B 20 UNP Q89YI8 EXPRESSION TAG SEQADV 9QZ2 ASP B 324 UNP Q89YI8 ALA 324 ENGINEERED MUTATION SEQADV 9QZ2 ASN B 325 UNP Q89YI8 GLU 325 ENGINEERED MUTATION SEQRES 1 A 426 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 426 LEU VAL PRO ARG GLY SER HIS MET GLN THR LYS ILE GLN SEQRES 3 A 426 LYS TYR ALA GLY THR ALA MET PRO TYR PRO ASN ARG THR SEQRES 4 A 426 ASP SER SER ILE THR PHE ARG ASP GLY MET THR PRO PHE SEQRES 5 A 426 TYR ILE ASN HIS LEU GLY ARG NEP GLY ALA ARG PHE PRO SEQRES 6 A 426 THR SER ARG LYS ALA LEU ASP LYS VAL GLU LYS VAL LEU SEQRES 7 A 426 VAL SER ALA GLN GLN GLU ASN GLY LEU THR SER GLU GLY SEQRES 8 A 426 MET ALA LEU LEU SER MET ILE ARG ARG LEU SER ARG LEU SEQRES 9 A 426 PHE ASP GLY GLN TRP GLY LYS LEU SER LYS LEU GLY GLU SEQRES 10 A 426 THR GLU GLN GLU GLY ILE ALA GLY ARG MET ILE ARG ASN SEQRES 11 A 426 TYR PRO GLN LEU PHE SER ASN SER ALA LYS ILE GLU ALA SEQRES 12 A 426 ILE ALA THR TYR VAL PRO ARG SER ILE ASN SER MET ASP SEQRES 13 A 426 ALA PHE LEU SER CYS MET ILE ARG HIS ASN PRO ALA LEU SEQRES 14 A 426 GLN VAL GLN ARG SER GLU GLY LYS GLN TYR ASN HIS ILE SEQRES 15 A 426 LEU ARG PHE PHE ASP LEU ASN LYS SER TYR VAL ASN TYR SEQRES 16 A 426 LYS GLU LYS GLY ASP TRP LEU PRO ILE TYR LYS ALA PHE SEQRES 17 A 426 VAL HIS LYS LYS ILE SER PRO VAL PRO ILE MET LYS LYS SEQRES 18 A 426 PHE LEU LEU ASN PRO GLU GLN TYR LEU ASP LYS GLU ALA SEQRES 19 A 426 GLU GLU PHE VAL MET ALA LEU PHE SER VAL ALA ALA ILE SEQRES 20 A 426 LEU PRO ASP THR SER ILE PRO LEU ASN LEU GLU ASP LEU SEQRES 21 A 426 PHE THR LEU ASP GLU TRP HIS ARG TYR TRP GLN THR GLN SEQRES 22 A 426 ASN LEU ARG GLN TYR MET SER LYS SER SER ALA PRO VAL SEQRES 23 A 426 GLY LYS MET LEU PRO VAL ALA ILE ALA TRP PRO LEU LEU SEQRES 24 A 426 SER GLU PHE ILE ARG SER ALA GLN GLU VAL ILE SER GLY SEQRES 25 A 426 LYS SER ASP TYR GLN ALA ASN PHE ARG PHE ALA HIS ASP SEQRES 26 A 426 ASN THR VAL ILE PRO PHE VAL SER LEU MET GLY ILE GLU SEQRES 27 A 426 LYS THR ASP VAL GLN VAL CYS ARG PRO ASP SER VAL SER SEQRES 28 A 426 VAL TYR TRP LYS ASP TYR GLU ILE SER PRO MET ALA ALA SEQRES 29 A 426 ASN VAL GLN TRP LEU PHE TYR ARG ASP ARG ASP GLN ARG SEQRES 30 A 426 ILE TRP VAL LYS ILE LEU LEU ASN GLU GLU ALA ALA ALA SEQRES 31 A 426 LEU PRO ILE SER THR ALA CYS PHE PRO TYR TYR SER TRP SEQRES 32 A 426 GLU LYS THR ARG ILE PHE PHE ASN GLN ARG ILE GLU MET SEQRES 33 A 426 ALA LYS LYS THR LEU SER VAL PHE ASN GLU SEQRES 1 B 426 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 426 LEU VAL PRO ARG GLY SER HIS MET GLN THR LYS ILE GLN SEQRES 3 B 426 LYS TYR ALA GLY THR ALA MET PRO TYR PRO ASN ARG THR SEQRES 4 B 426 ASP SER SER ILE THR PHE ARG ASP GLY MET THR PRO PHE SEQRES 5 B 426 TYR ILE ASN HIS LEU GLY ARG NEP GLY ALA ARG PHE PRO SEQRES 6 B 426 THR SER ARG LYS ALA LEU ASP LYS VAL GLU LYS VAL LEU SEQRES 7 B 426 VAL SER ALA GLN GLN GLU ASN GLY LEU THR SER GLU GLY SEQRES 8 B 426 MET ALA LEU LEU SER MET ILE ARG ARG LEU SER ARG LEU SEQRES 9 B 426 PHE ASP GLY GLN TRP GLY LYS LEU SER LYS LEU GLY GLU SEQRES 10 B 426 THR GLU GLN GLU GLY ILE ALA GLY ARG MET ILE ARG ASN SEQRES 11 B 426 TYR PRO GLN LEU PHE SER ASN SER ALA LYS ILE GLU ALA SEQRES 12 B 426 ILE ALA THR TYR VAL PRO ARG SER ILE ASN SER MET ASP SEQRES 13 B 426 ALA PHE LEU SER CYS MET ILE ARG HIS ASN PRO ALA LEU SEQRES 14 B 426 GLN VAL GLN ARG SER GLU GLY LYS GLN TYR ASN HIS ILE SEQRES 15 B 426 LEU ARG PHE PHE ASP LEU ASN LYS SER TYR VAL ASN TYR SEQRES 16 B 426 LYS GLU LYS GLY ASP TRP LEU PRO ILE TYR LYS ALA PHE SEQRES 17 B 426 VAL HIS LYS LYS ILE SER PRO VAL PRO ILE MET LYS LYS SEQRES 18 B 426 PHE LEU LEU ASN PRO GLU GLN TYR LEU ASP LYS GLU ALA SEQRES 19 B 426 GLU GLU PHE VAL MET ALA LEU PHE SER VAL ALA ALA ILE SEQRES 20 B 426 LEU PRO ASP THR SER ILE PRO LEU ASN LEU GLU ASP LEU SEQRES 21 B 426 PHE THR LEU ASP GLU TRP HIS ARG TYR TRP GLN THR GLN SEQRES 22 B 426 ASN LEU ARG GLN TYR MET SER LYS SER SER ALA PRO VAL SEQRES 23 B 426 GLY LYS MET LEU PRO VAL ALA ILE ALA TRP PRO LEU LEU SEQRES 24 B 426 SER GLU PHE ILE ARG SER ALA GLN GLU VAL ILE SER GLY SEQRES 25 B 426 LYS SER ASP TYR GLN ALA ASN PHE ARG PHE ALA HIS ASP SEQRES 26 B 426 ASN THR VAL ILE PRO PHE VAL SER LEU MET GLY ILE GLU SEQRES 27 B 426 LYS THR ASP VAL GLN VAL CYS ARG PRO ASP SER VAL SER SEQRES 28 B 426 VAL TYR TRP LYS ASP TYR GLU ILE SER PRO MET ALA ALA SEQRES 29 B 426 ASN VAL GLN TRP LEU PHE TYR ARG ASP ARG ASP GLN ARG SEQRES 30 B 426 ILE TRP VAL LYS ILE LEU LEU ASN GLU GLU ALA ALA ALA SEQRES 31 B 426 LEU PRO ILE SER THR ALA CYS PHE PRO TYR TYR SER TRP SEQRES 32 B 426 GLU LYS THR ARG ILE PHE PHE ASN GLN ARG ILE GLU MET SEQRES 33 B 426 ALA LYS LYS THR LEU SER VAL PHE ASN GLU MODRES 9QZ2 NEP A 59 HIS MODIFIED RESIDUE MODRES 9QZ2 NEP B 59 HIS MODIFIED RESIDUE HET NEP A 59 14 HET NEP B 59 14 HET PO4 A 501 5 HET PO4 B 501 5 HETNAM NEP N1-PHOSPHONOHISTIDINE HETNAM PO4 PHOSPHATE ION FORMUL 1 NEP 2(C6 H10 N3 O5 P) FORMUL 3 PO4 2(O4 P 3-) FORMUL 5 HOH *298(H2 O) HELIX 1 AA1 THR A 22 TYR A 27 1 6 HELIX 2 AA2 ALA A 28 MET A 32 5 5 HELIX 3 AA3 ARG A 67 GLU A 83 1 17 HELIX 4 AA4 THR A 87 ASP A 105 1 19 HELIX 5 AA5 SER A 112 TYR A 130 1 19 HELIX 6 AA6 VAL A 147 ASN A 165 1 19 HELIX 7 AA7 TYR A 178 ARG A 183 1 6 HELIX 8 AA8 ARG A 183 ASN A 188 1 6 HELIX 9 AA9 ASN A 188 GLY A 198 1 11 HELIX 10 AB1 ASP A 199 ILE A 212 1 14 HELIX 11 AB2 SER A 213 LYS A 219 1 7 HELIX 12 AB3 ASN A 224 TYR A 228 5 5 HELIX 13 AB4 LEU A 229 LEU A 247 1 19 HELIX 14 AB5 PRO A 248 THR A 250 5 3 HELIX 15 AB6 LEU A 256 PHE A 260 5 5 HELIX 16 AB7 THR A 261 SER A 281 1 21 HELIX 17 AB8 ALA A 283 LYS A 287 5 5 HELIX 18 AB9 MET A 288 ILE A 293 1 6 HELIX 19 AC1 ALA A 294 GLY A 311 1 18 HELIX 20 AC2 HIS A 323 GLY A 335 1 13 HELIX 21 AC3 ARG A 345 ASP A 347 5 3 HELIX 22 AC4 SER A 348 TRP A 353 1 6 HELIX 23 AC5 LYS A 354 SER A 359 1 6 HELIX 24 AC6 TRP A 402 VAL A 422 1 21 HELIX 25 AC7 THR B 22 TYR B 27 1 6 HELIX 26 AC8 ALA B 28 MET B 32 5 5 HELIX 27 AC9 ARG B 67 GLN B 82 1 16 HELIX 28 AD1 THR B 87 ASP B 105 1 19 HELIX 29 AD2 SER B 112 TYR B 130 1 19 HELIX 30 AD3 PRO B 131 SER B 135 5 5 HELIX 31 AD4 VAL B 147 ASN B 165 1 19 HELIX 32 AD5 TYR B 178 ARG B 183 1 6 HELIX 33 AD6 PHE B 184 LEU B 187 5 4 HELIX 34 AD7 ASN B 188 GLY B 198 1 11 HELIX 35 AD8 ASP B 199 ILE B 212 1 14 HELIX 36 AD9 SER B 213 LEU B 222 1 10 HELIX 37 AE1 GLU B 232 LEU B 247 1 16 HELIX 38 AE2 PRO B 248 THR B 250 5 3 HELIX 39 AE3 LEU B 256 PHE B 260 5 5 HELIX 40 AE4 THR B 261 SER B 281 1 21 HELIX 41 AE5 ALA B 283 LYS B 287 5 5 HELIX 42 AE6 MET B 288 ILE B 293 1 6 HELIX 43 AE7 ALA B 294 SER B 310 1 17 HELIX 44 AE8 HIS B 323 GLY B 335 1 13 HELIX 45 AE9 ARG B 345 ASP B 347 5 3 HELIX 46 AF1 SER B 348 TRP B 353 1 6 HELIX 47 AF2 LYS B 354 SER B 359 1 6 HELIX 48 AF3 TRP B 402 PHE B 423 1 22 SHEET 1 AA1 7 GLN A 169 GLU A 174 0 SHEET 2 AA1 7 LYS A 139 ALA A 144 1 N ILE A 140 O GLN A 169 SHEET 3 AA1 7 ALA A 317 ALA A 322 1 O PHE A 319 N GLU A 141 SHEET 4 AA1 7 TYR A 52 ARG A 58 1 N GLY A 57 O ARG A 320 SHEET 5 AA1 7 ASN A 364 ARG A 371 -1 O TRP A 367 N ASN A 54 SHEET 6 AA1 7 ILE A 377 LEU A 383 -1 O LEU A 382 N GLN A 366 SHEET 7 AA1 7 GLU A 386 ALA A 387 -1 O GLU A 386 N LEU A 383 SHEET 1 AA2 7 GLN A 169 GLU A 174 0 SHEET 2 AA2 7 LYS A 139 ALA A 144 1 N ILE A 140 O GLN A 169 SHEET 3 AA2 7 ALA A 317 ALA A 322 1 O PHE A 319 N GLU A 141 SHEET 4 AA2 7 TYR A 52 ARG A 58 1 N GLY A 57 O ARG A 320 SHEET 5 AA2 7 ASN A 364 ARG A 371 -1 O TRP A 367 N ASN A 54 SHEET 6 AA2 7 ILE A 377 LEU A 383 -1 O LEU A 382 N GLN A 366 SHEET 7 AA2 7 TYR A 400 SER A 401 -1 O TYR A 400 N VAL A 379 SHEET 1 AA3 7 GLN B 169 GLU B 174 0 SHEET 2 AA3 7 LYS B 139 ALA B 144 1 N ALA B 142 O GLN B 171 SHEET 3 AA3 7 ALA B 317 ALA B 322 1 O PHE B 319 N GLU B 141 SHEET 4 AA3 7 TYR B 52 ARG B 58 1 N GLY B 57 O ARG B 320 SHEET 5 AA3 7 ASN B 364 ARG B 371 -1 O VAL B 365 N LEU B 56 SHEET 6 AA3 7 ILE B 377 LEU B 383 -1 O LEU B 382 N GLN B 366 SHEET 7 AA3 7 GLU B 386 ALA B 387 -1 O GLU B 386 N LEU B 383 SHEET 1 AA4 7 GLN B 169 GLU B 174 0 SHEET 2 AA4 7 LYS B 139 ALA B 144 1 N ALA B 142 O GLN B 171 SHEET 3 AA4 7 ALA B 317 ALA B 322 1 O PHE B 319 N GLU B 141 SHEET 4 AA4 7 TYR B 52 ARG B 58 1 N GLY B 57 O ARG B 320 SHEET 5 AA4 7 ASN B 364 ARG B 371 -1 O VAL B 365 N LEU B 56 SHEET 6 AA4 7 ILE B 377 LEU B 383 -1 O LEU B 382 N GLN B 366 SHEET 7 AA4 7 TYR B 399 SER B 401 -1 O TYR B 400 N VAL B 379 LINK C ARG A 58 N NEP A 59 1555 1555 1.33 LINK C NEP A 59 N GLY A 60 1555 1555 1.33 LINK C ARG B 58 N NEP B 59 1555 1555 1.33 LINK C NEP B 59 N GLY B 60 1555 1555 1.33 CISPEP 1 PHE A 397 PRO A 398 0 3.65 CISPEP 2 PHE B 397 PRO B 398 0 6.24 CRYST1 52.470 117.910 76.110 90.00 108.13 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019059 0.000000 0.006240 0.00000 SCALE2 0.000000 0.008481 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013825 0.00000 CONECT 230 239 CONECT 239 230 240 CONECT 240 239 241 243 CONECT 241 240 242 253 CONECT 242 241 CONECT 243 240 244 CONECT 244 243 245 246 CONECT 245 244 247 CONECT 246 244 248 CONECT 247 245 248 CONECT 248 246 247 249 CONECT 249 248 250 251 252 CONECT 250 249 CONECT 251 249 CONECT 252 249 CONECT 253 241 CONECT 3478 3487 CONECT 3487 3478 3488 CONECT 3488 3487 3489 3491 CONECT 3489 3488 3490 3501 CONECT 3490 3489 CONECT 3491 3488 3492 CONECT 3492 3491 3493 3494 CONECT 3493 3492 3495 CONECT 3494 3492 3496 CONECT 3495 3493 3496 CONECT 3496 3494 3495 3497 CONECT 3497 3496 3498 3499 3500 CONECT 3498 3497 CONECT 3499 3497 CONECT 3500 3497 CONECT 3501 3489 CONECT 6490 6491 6492 6493 6494 CONECT 6491 6490 CONECT 6492 6490 CONECT 6493 6490 CONECT 6494 6490 CONECT 6495 6496 6497 6498 6499 CONECT 6496 6495 CONECT 6497 6495 CONECT 6498 6495 CONECT 6499 6495 MASTER 421 0 4 48 28 0 0 6 6788 2 42 66 END