HEADER OXYGEN BINDING 05-MAY-25 9R3P TITLE HEMOGLOBIN GLB2-1 OF LOTUS JAPONICUS (CYANO-FERRIC FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATYPICAL LEGHEMOGLOBIN 2-1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LJGLB2-1,PHYTOGLOBIN 2.1,PHYTOGB2.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LOTUS JAPONICUS; SOURCE 3 ORGANISM_TAXID: 34305; SOURCE 4 GENE: GLB2-1, LOTJAGI5G1V0253250, LJ5G3V1699110; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HEME, MULTIGENE FAMILY, OXYGEN BINDING, HEXACOORDINATION (FERRIC KEYWDS 2 FORM), TYROSINE (B10) EXPDTA X-RAY DIFFRACTION AUTHOR M.MARTINEZ-JULVEZ,M.BECANA,I.VILLAR REVDAT 1 13-MAY-26 9R3P 0 JRNL AUTH R.M.ESQUINAS-ARIZA,I.VILLAR,S.MINGUILLON,A.ZAMARRENO, JRNL AUTH 2 B.J.REEDER,N.SANDAL,D.YAN,J.M.GARCIA-MINA,D.DUANMU, JRNL AUTH 3 M.MARTINEZ-JULVEZ,M.BECANA JRNL TITL SINGULAR STRUCTURAL AND FUNCTIONAL FEATURES OF LJGLB2-1 AND JRNL TITL 2 COMPARISON WITH OTHER HEMOGLOBINS FROM LOTUS JAPONICUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 44575 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2365 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3275 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 177 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2398 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 95 REMARK 3 SOLVENT ATOMS : 171 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.95000 REMARK 3 B22 (A**2) : 1.13000 REMARK 3 B33 (A**2) : -2.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.081 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.862 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2550 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2428 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3464 ; 1.926 ; 1.895 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5596 ; 0.657 ; 1.796 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 300 ; 5.466 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 10 ;10.006 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 456 ;15.281 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 367 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2950 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 574 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1208 ; 2.543 ; 2.524 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1207 ; 2.544 ; 2.524 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1504 ; 3.555 ; 4.518 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1505 ; 3.555 ; 4.519 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1342 ; 4.766 ; 3.039 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1336 ; 4.741 ; 3.035 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1954 ; 7.498 ; 5.300 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3097 ; 8.476 ;26.190 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3051 ; 8.469 ;25.610 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9R3P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAY-25. REMARK 100 THE DEPOSITION ID IS D_1292142713. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979263 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47061 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 152.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.43400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG 4K, 200 MM AMMONIUM CITRATE, REMARK 280 4% POLYPROPYLENE GLYCOL, AND 100 MM KCN, PH 7, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.36650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.36650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 17.96400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.82800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 17.96400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.82800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 76.36650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 17.96400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.82800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 76.36650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 17.96400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.82800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -9 REMARK 465 SER A -8 REMARK 465 TRP A -7 REMARK 465 SER A -6 REMARK 465 HIS A -5 REMARK 465 PRO A -4 REMARK 465 GLN A -3 REMARK 465 PHE A -2 REMARK 465 GLU A -1 REMARK 465 LYS A 0 REMARK 465 GLY A 1 REMARK 465 ALA B -9 REMARK 465 SER B -8 REMARK 465 TRP B -7 REMARK 465 SER B -6 REMARK 465 HIS B -5 REMARK 465 PRO B -4 REMARK 465 GLN B -3 REMARK 465 PHE B -2 REMARK 465 GLU B -1 REMARK 465 LYS B 0 REMARK 465 GLY B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 FE HEM B 201 C CYN B 202 1.87 REMARK 500 FE HEM A 201 C CYN A 202 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 103 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 103 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 22 38.44 -150.13 REMARK 500 ASN B 22 39.10 -148.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 103 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 376 DISTANCE = 6.49 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 99 NE2 REMARK 620 2 HEM A 201 NA 91.2 REMARK 620 3 HEM A 201 NB 90.0 90.2 REMARK 620 4 HEM A 201 NC 89.2 179.2 89.0 REMARK 620 5 HEM A 201 ND 89.8 90.4 179.3 90.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 99 NE2 REMARK 620 2 HEM B 201 NA 90.7 REMARK 620 3 HEM B 201 NB 90.2 90.0 REMARK 620 4 HEM B 201 NC 88.9 178.6 88.7 REMARK 620 5 HEM B 201 ND 88.9 90.7 178.9 90.6 REMARK 620 N 1 2 3 4 DBREF 9R3P A 2 152 UNP I3SX86 GLB21_LOTJA 2 152 DBREF 9R3P B 2 152 UNP I3SX86 GLB21_LOTJA 2 152 SEQADV 9R3P ALA A -9 UNP I3SX86 EXPRESSION TAG SEQADV 9R3P SER A -8 UNP I3SX86 EXPRESSION TAG SEQADV 9R3P TRP A -7 UNP I3SX86 EXPRESSION TAG SEQADV 9R3P SER A -6 UNP I3SX86 EXPRESSION TAG SEQADV 9R3P HIS A -5 UNP I3SX86 EXPRESSION TAG SEQADV 9R3P PRO A -4 UNP I3SX86 EXPRESSION TAG SEQADV 9R3P GLN A -3 UNP I3SX86 EXPRESSION TAG SEQADV 9R3P PHE A -2 UNP I3SX86 EXPRESSION TAG SEQADV 9R3P GLU A -1 UNP I3SX86 EXPRESSION TAG SEQADV 9R3P LYS A 0 UNP I3SX86 EXPRESSION TAG SEQADV 9R3P GLY A 1 UNP I3SX86 EXPRESSION TAG SEQADV 9R3P ALA B -9 UNP I3SX86 EXPRESSION TAG SEQADV 9R3P SER B -8 UNP I3SX86 EXPRESSION TAG SEQADV 9R3P TRP B -7 UNP I3SX86 EXPRESSION TAG SEQADV 9R3P SER B -6 UNP I3SX86 EXPRESSION TAG SEQADV 9R3P HIS B -5 UNP I3SX86 EXPRESSION TAG SEQADV 9R3P PRO B -4 UNP I3SX86 EXPRESSION TAG SEQADV 9R3P GLN B -3 UNP I3SX86 EXPRESSION TAG SEQADV 9R3P PHE B -2 UNP I3SX86 EXPRESSION TAG SEQADV 9R3P GLU B -1 UNP I3SX86 EXPRESSION TAG SEQADV 9R3P LYS B 0 UNP I3SX86 EXPRESSION TAG SEQADV 9R3P GLY B 1 UNP I3SX86 EXPRESSION TAG SEQRES 1 A 162 ALA SER TRP SER HIS PRO GLN PHE GLU LYS GLY ALA THR SEQRES 2 A 162 PHE SER GLU GLU GLN GLU ALA LEU VAL ASN SER SER TRP SEQRES 3 A 162 GLU ALA PHE SER GLN ASN ILE PRO GLN LEU SER ILE ILE SEQRES 4 A 162 PHE TYR THR SER ILE LEU GLU LYS ALA PRO GLU ALA LYS SEQRES 5 A 162 ALA MET PHE SER PHE LEU LYS ASP SER ASP GLY VAL PRO SEQRES 6 A 162 LYS ASP ASN LEU ASP LEU GLU ALA HIS CYS GLU LYS VAL SEQRES 7 A 162 PHE GLU LEU THR ARG ASN SER ALA LEU GLN LEU ARG ALA SEQRES 8 A 162 LYS GLY LYS VAL GLU VAL GLU ARG ILE ALA LEU LYS PHE SEQRES 9 A 162 LEU GLY TYR VAL HIS ALA GLN ARG ARG VAL LEU ASP PRO SEQRES 10 A 162 HIS PHE LEU VAL LEU LYS GLU ALA LEU LEU LYS THR LEU SEQRES 11 A 162 LYS GLU ALA MET GLY ASP LYS TRP SER GLU GLU VAL SER SEQRES 12 A 162 ASN ALA TRP GLY ILE ALA TYR ASP GLU LEU ALA GLY VAL SEQRES 13 A 162 ILE LYS LYS GLY MET SER SEQRES 1 B 162 ALA SER TRP SER HIS PRO GLN PHE GLU LYS GLY ALA THR SEQRES 2 B 162 PHE SER GLU GLU GLN GLU ALA LEU VAL ASN SER SER TRP SEQRES 3 B 162 GLU ALA PHE SER GLN ASN ILE PRO GLN LEU SER ILE ILE SEQRES 4 B 162 PHE TYR THR SER ILE LEU GLU LYS ALA PRO GLU ALA LYS SEQRES 5 B 162 ALA MET PHE SER PHE LEU LYS ASP SER ASP GLY VAL PRO SEQRES 6 B 162 LYS ASP ASN LEU ASP LEU GLU ALA HIS CYS GLU LYS VAL SEQRES 7 B 162 PHE GLU LEU THR ARG ASN SER ALA LEU GLN LEU ARG ALA SEQRES 8 B 162 LYS GLY LYS VAL GLU VAL GLU ARG ILE ALA LEU LYS PHE SEQRES 9 B 162 LEU GLY TYR VAL HIS ALA GLN ARG ARG VAL LEU ASP PRO SEQRES 10 B 162 HIS PHE LEU VAL LEU LYS GLU ALA LEU LEU LYS THR LEU SEQRES 11 B 162 LYS GLU ALA MET GLY ASP LYS TRP SER GLU GLU VAL SER SEQRES 12 B 162 ASN ALA TRP GLY ILE ALA TYR ASP GLU LEU ALA GLY VAL SEQRES 13 B 162 ILE LYS LYS GLY MET SER HET HEM A 201 43 HET CYN A 202 2 HET HEM B 201 43 HET CYN B 202 2 HET PO4 B 203 5 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CYN CYANIDE ION HETNAM PO4 PHOSPHATE ION HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 CYN 2(C N 1-) FORMUL 7 PO4 O4 P 3- FORMUL 8 HOH *171(H2 O) HELIX 1 AA1 SER A 5 GLN A 21 1 17 HELIX 2 AA2 ASN A 22 ALA A 38 1 17 HELIX 3 AA3 PRO A 39 MET A 44 5 6 HELIX 4 AA4 ASN A 58 LYS A 82 1 25 HELIX 5 AA5 GLU A 88 ARG A 102 1 15 HELIX 6 AA6 LEU A 105 GLY A 125 1 21 HELIX 7 AA7 ASP A 126 TRP A 128 5 3 HELIX 8 AA8 SER A 129 SER A 152 1 24 HELIX 9 AA9 SER B 5 GLN B 21 1 17 HELIX 10 AB1 ASN B 22 ALA B 38 1 17 HELIX 11 AB2 GLU B 40 PHE B 45 1 6 HELIX 12 AB3 ASN B 58 GLY B 83 1 26 HELIX 13 AB4 GLU B 88 ARG B 102 1 15 HELIX 14 AB5 LEU B 105 GLY B 125 1 21 HELIX 15 AB6 ASP B 126 TRP B 128 5 3 HELIX 16 AB7 SER B 129 SER B 152 1 24 LINK NE2 HIS A 99 FE HEM A 201 1555 1555 2.05 LINK NE2 HIS B 99 FE HEM B 201 1555 1555 2.05 CRYST1 35.928 127.656 152.733 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027833 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007834 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006547 0.00000 CONECT 781 2443 CONECT 1981 2488 CONECT 2401 2405 2432 CONECT 2402 2408 2415 CONECT 2403 2418 2422 CONECT 2404 2425 2429 CONECT 2405 2401 2406 2439 CONECT 2406 2405 2407 2410 CONECT 2407 2406 2408 2409 CONECT 2408 2402 2407 2439 CONECT 2409 2407 CONECT 2410 2406 2411 CONECT 2411 2410 2412 CONECT 2412 2411 2413 2414 CONECT 2413 2412 CONECT 2414 2412 CONECT 2415 2402 2416 2440 CONECT 2416 2415 2417 2419 CONECT 2417 2416 2418 2420 CONECT 2418 2403 2417 2440 CONECT 2419 2416 CONECT 2420 2417 2421 CONECT 2421 2420 CONECT 2422 2403 2423 2441 CONECT 2423 2422 2424 2426 CONECT 2424 2423 2425 2427 CONECT 2425 2404 2424 2441 CONECT 2426 2423 CONECT 2427 2424 2428 CONECT 2428 2427 CONECT 2429 2404 2430 2442 CONECT 2430 2429 2431 2433 CONECT 2431 2430 2432 2434 CONECT 2432 2401 2431 2442 CONECT 2433 2430 CONECT 2434 2431 2435 CONECT 2435 2434 2436 CONECT 2436 2435 2437 2438 CONECT 2437 2436 CONECT 2438 2436 CONECT 2439 2405 2408 2443 CONECT 2440 2415 2418 2443 CONECT 2441 2422 2425 2443 CONECT 2442 2429 2432 2443 CONECT 2443 781 2439 2440 2441 CONECT 2443 2442 CONECT 2444 2445 CONECT 2445 2444 CONECT 2446 2450 2477 CONECT 2447 2453 2460 CONECT 2448 2463 2467 CONECT 2449 2470 2474 CONECT 2450 2446 2451 2484 CONECT 2451 2450 2452 2455 CONECT 2452 2451 2453 2454 CONECT 2453 2447 2452 2484 CONECT 2454 2452 CONECT 2455 2451 2456 CONECT 2456 2455 2457 CONECT 2457 2456 2458 2459 CONECT 2458 2457 CONECT 2459 2457 CONECT 2460 2447 2461 2485 CONECT 2461 2460 2462 2464 CONECT 2462 2461 2463 2465 CONECT 2463 2448 2462 2485 CONECT 2464 2461 CONECT 2465 2462 2466 CONECT 2466 2465 CONECT 2467 2448 2468 2486 CONECT 2468 2467 2469 2471 CONECT 2469 2468 2470 2472 CONECT 2470 2449 2469 2486 CONECT 2471 2468 CONECT 2472 2469 2473 CONECT 2473 2472 CONECT 2474 2449 2475 2487 CONECT 2475 2474 2476 2478 CONECT 2476 2475 2477 2479 CONECT 2477 2446 2476 2487 CONECT 2478 2475 CONECT 2479 2476 2480 CONECT 2480 2479 2481 CONECT 2481 2480 2482 2483 CONECT 2482 2481 CONECT 2483 2481 CONECT 2484 2450 2453 2488 CONECT 2485 2460 2463 2488 CONECT 2486 2467 2470 2488 CONECT 2487 2474 2477 2488 CONECT 2488 1981 2484 2485 2486 CONECT 2488 2487 CONECT 2489 2490 CONECT 2490 2489 CONECT 2491 2492 2493 2494 2495 CONECT 2492 2491 CONECT 2493 2491 CONECT 2494 2491 CONECT 2495 2491 MASTER 390 0 5 16 0 0 0 6 2664 2 99 26 END