HEADER LIGASE 06-MAY-25 9R3W TITLE FUNGAL TRNA LIGASE TRL1-LIG-KIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 EC: 6.5.1.3; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: N-TERMINAL 6XHIS TAG WAS PROTEOLYTICALLY REMOVED PRIOR COMPND 7 TO CRYSTALLIZATION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCHAETOIDES THERMOPHILA; SOURCE 3 ORGANISM_TAXID: 209285; SOURCE 4 GENE: CTHT_0034810; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRNA LIGASE, POLYNUCLEOTIDE KINASE, TRNA SPLICING, KEYWDS 2 ADENYLYLTRANSFERASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.PESCHEK,S.KOEHLER REVDAT 2 26-NOV-25 9R3W 1 JRNL REVDAT 1 08-OCT-25 9R3W 0 JRNL AUTH S.KOHLER,J.PESCHEK JRNL TITL INTERDOMAIN ASSEMBLY BETWEEN THE FUNGAL TRNA LIGASE JRNL TITL 2 ADENYLYLTRANSFERASE AND KINASE DOMAIN. JRNL REF RNA V. 31 1800 2025 JRNL REFN ESSN 1469-9001 JRNL PMID 40983467 JRNL DOI 10.1261/RNA.080592.125 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 106644 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 5303 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8000 - 5.8700 1.00 3371 202 0.1690 0.1887 REMARK 3 2 5.8700 - 4.6600 1.00 3409 153 0.1574 0.2400 REMARK 3 3 4.6600 - 4.0700 1.00 3336 215 0.1463 0.1501 REMARK 3 4 4.0700 - 3.7000 1.00 3350 189 0.1496 0.1843 REMARK 3 5 3.7000 - 3.4300 1.00 3373 193 0.1640 0.2168 REMARK 3 6 3.4300 - 3.2300 1.00 3402 156 0.1864 0.2281 REMARK 3 7 3.2300 - 3.0700 1.00 3382 163 0.1890 0.2580 REMARK 3 8 3.0700 - 2.9400 1.00 3385 176 0.1921 0.2379 REMARK 3 9 2.9400 - 2.8200 1.00 3372 198 0.2013 0.2572 REMARK 3 10 2.8200 - 2.7300 1.00 3373 181 0.1929 0.2282 REMARK 3 11 2.7300 - 2.6400 1.00 3358 180 0.1969 0.2498 REMARK 3 12 2.6400 - 2.5700 1.00 3400 159 0.1891 0.2333 REMARK 3 13 2.5700 - 2.5000 1.00 3367 175 0.1900 0.2523 REMARK 3 14 2.5000 - 2.4400 1.00 3419 176 0.1905 0.2243 REMARK 3 15 2.4400 - 2.3800 1.00 3387 155 0.1924 0.2169 REMARK 3 16 2.3800 - 2.3300 1.00 3383 171 0.1778 0.2392 REMARK 3 17 2.3300 - 2.2800 1.00 3358 193 0.1893 0.2357 REMARK 3 18 2.2800 - 2.2400 1.00 3354 193 0.1961 0.2458 REMARK 3 19 2.2400 - 2.2000 1.00 3375 178 0.1950 0.2039 REMARK 3 20 2.2000 - 2.1600 1.00 3346 195 0.1915 0.2341 REMARK 3 21 2.1600 - 2.1300 1.00 3388 184 0.2044 0.2423 REMARK 3 22 2.1300 - 2.1000 1.00 3394 162 0.2245 0.2354 REMARK 3 23 2.1000 - 2.0700 1.00 3351 179 0.2295 0.2511 REMARK 3 24 2.0700 - 2.0400 1.00 3412 171 0.2399 0.2318 REMARK 3 25 2.0400 - 2.0100 1.00 3353 190 0.2496 0.2769 REMARK 3 26 2.0100 - 1.9800 1.00 3399 154 0.2588 0.3464 REMARK 3 27 1.9800 - 1.9600 1.00 3386 157 0.2629 0.3420 REMARK 3 28 1.9600 - 1.9300 1.00 3369 194 0.2926 0.3265 REMARK 3 29 1.9300 - 1.9100 1.00 3378 156 0.3036 0.3390 REMARK 3 30 1.9100 - 1.8900 1.00 3411 155 0.3406 0.3809 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.223 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.953 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 5036 REMARK 3 ANGLE : 1.146 6826 REMARK 3 CHIRALITY : 0.068 739 REMARK 3 PLANARITY : 0.013 881 REMARK 3 DIHEDRAL : 10.884 683 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 24.7395 -12.4847 27.0111 REMARK 3 T TENSOR REMARK 3 T11: 0.2527 T22: 0.2866 REMARK 3 T33: 0.2802 T12: 0.0067 REMARK 3 T13: 0.0108 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 0.4563 L22: 0.7843 REMARK 3 L33: 0.3929 L12: 0.2868 REMARK 3 L13: -0.0448 L23: -0.1340 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: 0.0056 S13: 0.0334 REMARK 3 S21: -0.0402 S22: 0.0049 S23: 0.0040 REMARK 3 S31: 0.0462 S32: -0.0284 S33: -0.0015 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9R3W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-MAY-25. REMARK 100 THE DEPOSITION ID IS D_1292147543. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8731 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : VERTICAL CRL / HORIZONTAL REMARK 200 ELLIPTICAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION JUN 30, 2023 REMARK 200 BUILT=20230630 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 1492263 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 48.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 26.50 REMARK 200 R MERGE (I) : 0.16800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 26.60 REMARK 200 R MERGE FOR SHELL (I) : 2.80100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 41%(V/V) PEG 400 AND 0.1 M IMIDAZOLE, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 56.33700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 56.33700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 56.33700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 56.33700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 56.33700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.33700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 56.33700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.33700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 818 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 GLY A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 6 REMARK 465 LYS A 7 REMARK 465 GLN A 8 REMARK 465 ARG A 9 REMARK 465 ASP A 10 REMARK 465 LYS A 56 REMARK 465 LYS A 57 REMARK 465 SER A 58 REMARK 465 GLY A 59 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1110 O HOH A 1144 2.04 REMARK 500 OD1 ASP A 88 NZ LYS A 91 2.09 REMARK 500 O HOH A 1076 O HOH A 1110 2.10 REMARK 500 O HOH A 1116 O HOH A 1119 2.12 REMARK 500 O HOH A 1084 O HOH A 1106 2.15 REMARK 500 O HOH A 1111 O HOH A 1126 2.15 REMARK 500 OD2 ASP A 567 O HOH A 801 2.16 REMARK 500 O ALA A 51 O HOH A 802 2.16 REMARK 500 O HOH A 933 O HOH A 1082 2.19 REMARK 500 O HOH A 1118 O HOH A 1127 2.19 REMARK 500 O HOH A 933 O HOH A 1065 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 61 107.63 -44.87 REMARK 500 ASP A 221 102.11 -164.89 REMARK 500 HIS A 227 -105.92 -109.72 REMARK 500 VAL A 314 -164.91 -121.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 486 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9R3W A 1 624 UNP G0S6G2 G0S6G2_CHATD 1 624 SEQADV 9R3W GLY A -2 UNP G0S6G2 EXPRESSION TAG SEQADV 9R3W SER A -1 UNP G0S6G2 EXPRESSION TAG SEQADV 9R3W HIS A 0 UNP G0S6G2 EXPRESSION TAG SEQRES 1 A 627 GLY SER HIS MET ASP GLY THR ALA GLU LYS GLN ARG ASP SEQRES 2 A 627 SER LEU ALA SER ARG TYR LYS ALA SER THR ASP TYR ALA SEQRES 3 A 627 LYS ASP ALA GLU GLY LEU THR ALA PRO TYR VAL SER GLN SEQRES 4 A 627 ASP PRO GLN GLU THR ALA ALA LEU VAL ARG ALA LEU ASP SEQRES 5 A 627 ASP ALA ALA LYS LYS GLY LYS LYS SER GLY GLY PHE SER SEQRES 6 A 627 VAL LYS LYS THR ARG TYR ALA VAL ALA SER SER PRO THR SEQRES 7 A 627 GLY ALA GLU VAL ASP SER TRP ARG PHE ASN ASP TRP ASP SEQRES 8 A 627 TYR LYS LYS PRO ASP LEU PRO THR TYR ALA ARG GLY LEU SEQRES 9 A 627 PHE THR THR ARG THR GLN HIS GLY VAL PRO GLU ILE ALA SEQRES 10 A 627 VAL ARG GLY TYR ASP LYS PHE PHE ASN ILE ASP GLU THR SEQRES 11 A 627 ARG ASP THR ALA TRP SER ALA ILE ARG GLU ARG THR LYS SEQRES 12 A 627 GLY PRO TYR GLU LEU THR LEU LYS GLU ASN GLY CYS ILE SEQRES 13 A 627 ILE PHE ILE SER GLY LEU GLU ASP GLY THR LEU LEU VAL SEQRES 14 A 627 CYS SER LYS HIS SER THR GLY ASP ARG SER ASP VAL ALA SEQRES 15 A 627 LEU SER HIS SER SER ALA GLY GLU LYS HIS LEU GLU ALA SEQRES 16 A 627 GLN LEU GLU ARG ILE GLY LYS THR LYS GLU GLU LEU ALA SEQRES 17 A 627 ARG GLU LEU ARG LYS ARG ASN ALA THR ALA VAL ALA GLU SEQRES 18 A 627 LEU CYS ASP ASP SER PHE GLU GLU HIS ILE LEU ALA TYR SEQRES 19 A 627 GLY PRO ASP LYS ALA GLY LEU TYR LEU HIS GLY ILE ASN SEQRES 20 A 627 LEU ASN ILE PRO GLU PHE ILE THR TYR PRO SER PRO LEU SEQRES 21 A 627 VAL GLN LYS PHE ALA GLU ASP TRP GLY PHE ARG LYS THR SEQRES 22 A 627 GLY LEU ILE ILE ILE ASP ASN ILE ASP ASP VAL LYS ALA SEQRES 23 A 627 PHE LEU GLU GLU VAL ALA GLU THR GLY ALA HIS ASP GLY SEQRES 24 A 627 ARG ASP VAL GLU GLY PHE VAL ILE ARG CYS LYS LYS SER SEQRES 25 A 627 THR ASN PRO GLY VAL GLY PRO TYR HIS ASP TRP PHE PHE SEQRES 26 A 627 LYS TYR LYS PHE GLU GLU PRO TYR LEU MET TYR ARG GLN SEQRES 27 A 627 TRP ARG GLU CYS THR LYS ALA LEU ILE SER GLY LYS GLN SEQRES 28 A 627 PRO LYS ILE LYS LYS HIS VAL LYS ILE THR GLU GLU TYR SEQRES 29 A 627 LEU LEU TYR ALA ARG LYS ARG LEU ALA ALA ASP PRO LYS SEQRES 30 A 627 LEU ALA LYS LEU TYR ASN GLN ASN HIS GLY ILE ILE LYS SEQRES 31 A 627 LEU ARG ASN ASP PHE LEU GLU TYR LYS ASN MET LYS GLY SEQRES 32 A 627 THR ASP ALA ALA ASN LEU GLU ASP ASP GLY ALA ALA SER SEQRES 33 A 627 VAL THR ARG ASP ILE ILE LEU VAL PRO ILE ALA THR ILE SEQRES 34 A 627 GLY CYS GLY LYS THR THR LEU GLY VAL ALA LEU THR LYS SEQRES 35 A 627 LEU PHE GLY TRP GLY HIS ILE GLN ASN ASP ASN ILE THR SEQRES 36 A 627 GLY SER LYS ARG PRO PRO ARG PHE THR LYS ALA VAL LEU SEQRES 37 A 627 ASP GLU LEU ASN GLU HIS PRO ALA VAL PHE ALA ASP ARG SEQRES 38 A 627 ASN ASN SER MET ARG GLN GLU ARG LYS GLN LEU LEU THR SEQRES 39 A 627 ASP VAL LYS MET GLN HIS THR THR ALA ARG LEU VAL ALA SEQRES 40 A 627 LEU HIS PHE VAL HIS ASP ASP ILE ASN THR VAL ARG LYS SEQRES 41 A 627 VAL THR GLN GLU ARG VAL ILE GLN ARG GLY ASP ASN HIS SEQRES 42 A 627 GLN THR ILE GLN ALA ALA THR ASP VAL ASN LYS VAL ILE SEQRES 43 A 627 GLY ILE MET GLU GLY PHE ILE HIS ARG PHE GLU PRO CYS SEQRES 44 A 627 ASP PRO GLU LYS ASP PRO ASP GLU GLY PHE ASP ALA VAL SEQRES 45 A 627 ILE ASP LEU ASP PRO THR ALA GLY SER ARG GLU ASN LEU SEQRES 46 A 627 GLU VAL VAL ILE ARG GLU LEU HIS ARG LEU TYR PRO ASN SEQRES 47 A 627 PHE VAL LYS GLU VAL PRO PRO ALA GLU ALA MET ASP GLU SEQRES 48 A 627 ALA ILE LYS PHE ALA MET GLU SER TYR LYS PRO ASP LEU SEQRES 49 A 627 ARG HIS ILE HET GDP A 701 28 HET APC A 702 31 HET SO4 A 703 5 HET SO4 A 704 5 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM APC DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER HETNAM SO4 SULFATE ION HETSYN APC ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 APC C11 H18 N5 O12 P3 FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 HOH *348(H2 O) HELIX 1 AA1 SER A 11 TYR A 16 1 6 HELIX 2 AA2 TYR A 22 GLU A 27 5 6 HELIX 3 AA3 ASP A 37 LYS A 54 1 18 HELIX 4 AA4 ASP A 86 LYS A 91 5 6 HELIX 5 AA5 ALA A 131 ARG A 138 1 8 HELIX 6 AA6 SER A 181 ILE A 197 1 17 HELIX 7 AA7 THR A 200 ARG A 211 1 12 HELIX 8 AA8 PRO A 254 GLY A 266 1 13 HELIX 9 AA9 ASN A 277 GLU A 290 1 14 HELIX 10 AB1 PRO A 329 GLY A 346 1 18 HELIX 11 AB2 HIS A 354 ASP A 372 1 19 HELIX 12 AB3 LYS A 374 GLN A 381 1 8 HELIX 13 AB4 GLY A 384 LYS A 396 1 13 HELIX 14 AB5 LYS A 399 ASN A 405 1 7 HELIX 15 AB6 GLY A 410 VAL A 414 5 5 HELIX 16 AB7 GLY A 429 GLY A 442 1 14 HELIX 17 AB8 ASP A 449 ILE A 451 5 3 HELIX 18 AB9 LYS A 455 LEU A 468 1 14 HELIX 19 AC1 MET A 482 HIS A 497 1 16 HELIX 20 AC2 ASP A 511 GLY A 527 1 17 HELIX 21 AC3 HIS A 530 ALA A 535 1 6 HELIX 22 AC4 ASP A 538 PHE A 553 1 16 HELIX 23 AC5 PRO A 562 PHE A 566 5 5 HELIX 24 AC6 GLY A 577 TYR A 593 1 17 HELIX 25 AC7 PRO A 602 TYR A 617 1 16 SHEET 1 AA1 4 VAL A 63 ALA A 69 0 SHEET 2 AA1 4 GLU A 78 PHE A 84 -1 O ARG A 83 N LYS A 64 SHEET 3 AA1 4 LEU A 101 ARG A 105 -1 O THR A 103 N ASP A 80 SHEET 4 AA1 4 PRO A 111 ARG A 116 -1 O GLU A 112 N THR A 104 SHEET 1 AA2 4 LEU A 272 ILE A 275 0 SHEET 2 AA2 4 THR A 139 LEU A 147 -1 N LEU A 145 O ILE A 273 SHEET 3 AA2 4 GLY A 301 LYS A 308 -1 O VAL A 303 N THR A 146 SHEET 4 AA2 4 HIS A 318 LYS A 325 -1 O PHE A 322 N ILE A 304 SHEET 1 AA3 5 LEU A 164 CYS A 167 0 SHEET 2 AA3 5 CYS A 152 GLY A 158 -1 N PHE A 155 O CYS A 167 SHEET 3 AA3 5 ALA A 213 CYS A 220 -1 O ALA A 215 N ILE A 156 SHEET 4 AA3 5 GLY A 237 LEU A 245 -1 O GLY A 242 N VAL A 216 SHEET 5 AA3 5 ARG A 268 LYS A 269 1 O ARG A 268 N LEU A 238 SHEET 1 AA4 2 ALA A 293 HIS A 294 0 SHEET 2 AA4 2 ARG A 297 ASP A 298 -1 O ARG A 297 N HIS A 294 SHEET 1 AA5 5 GLY A 444 GLN A 447 0 SHEET 2 AA5 5 ALA A 473 ASP A 477 1 O ALA A 473 N GLY A 444 SHEET 3 AA5 5 ILE A 418 ILE A 423 1 N LEU A 420 O ALA A 476 SHEET 4 AA5 5 ARG A 501 PHE A 507 1 O VAL A 503 N VAL A 421 SHEET 5 AA5 5 ALA A 568 LEU A 572 1 O LEU A 572 N HIS A 506 CISPEP 1 GLY A 141 PRO A 142 0 1.48 CISPEP 2 GLU A 328 PRO A 329 0 5.32 CISPEP 3 ASP A 561 PRO A 562 0 4.12 CRYST1 112.674 112.674 108.270 90.00 90.00 90.00 P 4 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008875 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008875 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009236 0.00000 CONECT 4862 4863 4864 4865 4866 CONECT 4863 4862 CONECT 4864 4862 CONECT 4865 4862 CONECT 4866 4862 4867 CONECT 4867 4866 4868 4869 4870 CONECT 4868 4867 CONECT 4869 4867 CONECT 4870 4867 4871 CONECT 4871 4870 4872 CONECT 4872 4871 4873 4874 CONECT 4873 4872 4878 CONECT 4874 4872 4875 4876 CONECT 4875 4874 CONECT 4876 4874 4877 4878 CONECT 4877 4876 CONECT 4878 4873 4876 4879 CONECT 4879 4878 4880 4889 CONECT 4880 4879 4881 CONECT 4881 4880 4882 CONECT 4882 4881 4883 4889 CONECT 4883 4882 4884 4885 CONECT 4884 4883 CONECT 4885 4883 4886 CONECT 4886 4885 4887 4888 CONECT 4887 4886 CONECT 4888 4886 4889 CONECT 4889 4879 4882 4888 CONECT 4890 4891 4892 4893 4897 CONECT 4891 4890 CONECT 4892 4890 CONECT 4893 4890 CONECT 4894 4895 4896 4897 4901 CONECT 4895 4894 CONECT 4896 4894 CONECT 4897 4890 4894 CONECT 4898 4899 4900 4901 4902 CONECT 4899 4898 CONECT 4900 4898 CONECT 4901 4894 4898 CONECT 4902 4898 4903 CONECT 4903 4902 4904 CONECT 4904 4903 4905 4906 CONECT 4905 4904 4910 CONECT 4906 4904 4907 4908 CONECT 4907 4906 CONECT 4908 4906 4909 4910 CONECT 4909 4908 CONECT 4910 4905 4908 4911 CONECT 4911 4910 4912 4920 CONECT 4912 4911 4913 CONECT 4913 4912 4914 CONECT 4914 4913 4915 4920 CONECT 4915 4914 4916 4917 CONECT 4916 4915 CONECT 4917 4915 4918 CONECT 4918 4917 4919 CONECT 4919 4918 4920 CONECT 4920 4911 4914 4919 CONECT 4921 4922 4923 4924 4925 CONECT 4922 4921 CONECT 4923 4921 CONECT 4924 4921 CONECT 4925 4921 CONECT 4926 4927 4928 4929 4930 CONECT 4927 4926 CONECT 4928 4926 CONECT 4929 4926 CONECT 4930 4926 MASTER 343 0 4 25 20 0 0 6 5277 1 69 49 END