HEADER RNA BINDING PROTEIN 08-MAY-25 9R53 TITLE NMR STRUCTURE OF SRSF6 RRM1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGININE/SERINE-RICH SPLICING FACTOR 6 VARIANT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: FIRST FOUR RESIDUE "GAMA" ARE REMAINS FROM EXPRESSION COMPND 6 TAG AND TEV-CLEAVAGE SITE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: JVE001 KEYWDS STRUCTURE FROM CYANA 3.98.15 SRSF6 SPLICING FACTOR RRM RNA-BINDING KEYWDS 2 PROTEIN, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.VON EHR,A.SCHLUNDT REVDAT 1 20-MAY-26 9R53 0 JRNL AUTH J.VON EHR,A.SCHLUNDT JRNL TITL STRUCTURES AND INSIGHTS ON RNA-BINDING FOR SERINE-ARGININE JRNL TITL 2 RICH SPLICING FACTOR 6 (SRSF6) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.98.15 REMARK 3 AUTHORS : GUENTERT P., BUCHNER L. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9R53 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-MAY-25. REMARK 100 THE DEPOSITION ID IS D_1292145074. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 290 UM [U-99% 13C; U-99% 15N] REMARK 210 SRSF6 RRM1, 2 MM DTT, 150 MM REMARK 210 SODIUM CHLORIDE, 25 MM SODIUM REMARK 210 PHOSPHATE, 95 % H2O, 5 % [U-2H] REMARK 210 D2O, 95% H2O/5% D2O; 258 UM [U- REMARK 210 99% 13C; U-99% 15N] SRSF6 RRM1, REMARK 210 2 MM DTT, 150 MM SODIUM CHLORIDE, REMARK 210 25 MM SODIUM PHOSPHATE, 95 % REMARK 210 H2O, 5 % [U-2H] D2O, 95% H2O/5% REMARK 210 D2O; 250 UM [U-99% 13C; U-99% REMARK 210 15N] SRSF6 RRM1, 2 MM DTT, 150 REMARK 210 MM SODIUM CHLORIDE, 25 MM SODIUM REMARK 210 PHOSPHATE, 95 % H2O, 5 % [U-2H] REMARK 210 D2O, 95% H2O/5% D2O; 320 UM [U- REMARK 210 99% 15N] SRSF6 RRM1, 2 MM DTT, REMARK 210 150 MM SODIUM CHLORIDE, 25 MM REMARK 210 SODIUM PHOSPHATE, 95 % H2O, 5 % REMARK 210 [U-2H] D2O, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D HCCH-TOCSY; 3D REMARK 210 HNCO; 3D HNCACO; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HBHANH; 3D 1H-13C REMARK 210 NOESY AROMATIC; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 900 MHZ; 950 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III; AVANCE NEO REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.6 - 4.4, REMARK 210 ANALYSISASSIGN 2.5.1, CYANA REMARK 210 3.98.15 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A -1 -70.71 -72.05 REMARK 500 1 MET A 1 73.75 -114.21 REMARK 500 1 ALA A 70 66.57 174.67 REMARK 500 2 MET A 1 68.67 -117.42 REMARK 500 2 SER A 10 -173.72 -59.64 REMARK 500 2 ALA A 70 66.07 174.64 REMARK 500 3 ALA A -2 173.00 -54.05 REMARK 500 3 ALA A 70 66.25 174.49 REMARK 500 4 MET A -1 -57.43 -134.20 REMARK 500 4 ALA A 0 -70.48 -84.61 REMARK 500 4 SER A 10 -172.67 -68.07 REMARK 500 4 ALA A 70 63.33 174.83 REMARK 500 5 MET A 1 69.19 -117.70 REMARK 500 5 SER A 10 -172.74 -67.38 REMARK 500 5 GLU A 30 141.55 -170.37 REMARK 500 5 ALA A 70 66.13 174.59 REMARK 500 6 MET A -1 -176.98 -62.16 REMARK 500 6 GLU A 30 139.80 -170.73 REMARK 500 6 ALA A 70 66.65 175.04 REMARK 500 7 MET A -1 -175.48 -63.94 REMARK 500 7 MET A 1 73.54 -114.81 REMARK 500 7 SER A 10 -172.73 -59.72 REMARK 500 7 ALA A 70 63.68 174.52 REMARK 500 8 ALA A 70 66.55 174.79 REMARK 500 9 ALA A -2 179.54 -57.25 REMARK 500 9 ALA A 70 65.01 174.44 REMARK 500 10 ALA A -2 -74.91 -90.64 REMARK 500 10 ALA A 70 66.55 175.45 REMARK 500 11 MET A -1 -73.66 -115.67 REMARK 500 11 SER A 10 -172.77 -62.89 REMARK 500 11 ALA A 70 65.42 174.35 REMARK 500 12 SER A 10 -172.74 -59.97 REMARK 500 12 ALA A 70 66.65 174.77 REMARK 500 13 MET A -1 -74.10 -127.29 REMARK 500 13 GLU A 30 137.07 -170.51 REMARK 500 13 ALA A 70 66.60 174.65 REMARK 500 14 MET A -1 -176.26 -69.96 REMARK 500 14 MET A 1 73.96 -118.02 REMARK 500 14 SER A 10 -172.91 -59.36 REMARK 500 14 ALA A 70 63.98 174.91 REMARK 500 15 ALA A 70 66.56 174.76 REMARK 500 16 ALA A 0 125.65 -177.74 REMARK 500 16 MET A 1 74.20 -115.52 REMARK 500 16 SER A 10 -175.56 -66.46 REMARK 500 16 ALA A 70 65.41 174.76 REMARK 500 17 ALA A 70 63.99 175.01 REMARK 500 18 MET A -1 -55.86 -127.18 REMARK 500 18 ALA A 0 -61.04 -136.47 REMARK 500 18 SER A 10 -172.55 -69.81 REMARK 500 18 ALA A 70 67.00 175.50 REMARK 500 REMARK 500 THIS ENTRY HAS 55 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 52801 RELATED DB: BMRB DBREF 9R53 A 1 72 UNP Q59GY3 Q59GY3_HUMAN 35 106 SEQADV 9R53 GLY A -3 UNP Q59GY3 EXPRESSION TAG SEQADV 9R53 ALA A -2 UNP Q59GY3 EXPRESSION TAG SEQADV 9R53 MET A -1 UNP Q59GY3 EXPRESSION TAG SEQADV 9R53 ALA A 0 UNP Q59GY3 EXPRESSION TAG SEQRES 1 A 76 GLY ALA MET ALA MET PRO ARG VAL TYR ILE GLY ARG LEU SEQRES 2 A 76 SER TYR ASN VAL ARG GLU LYS ASP ILE GLN ARG PHE PHE SEQRES 3 A 76 SER GLY TYR GLY ARG LEU LEU GLU VAL ASP LEU LYS ASN SEQRES 4 A 76 GLY TYR GLY PHE VAL GLU PHE GLU ASP SER ARG ASP ALA SEQRES 5 A 76 ASP ASP ALA VAL TYR GLU LEU ASN GLY LYS GLU LEU CYS SEQRES 6 A 76 GLY GLU ARG VAL ILE VAL GLU HIS ALA ARG GLY HELIX 1 AA1 ARG A 14 SER A 23 1 10 HELIX 2 AA2 ASP A 44 LEU A 55 1 12 SHEET 1 AA1 4 GLU A 30 LEU A 33 0 SHEET 2 AA1 4 GLY A 38 GLU A 41 -1 O PHE A 39 N ASP A 32 SHEET 3 AA1 4 VAL A 4 GLY A 7 -1 N VAL A 4 O VAL A 40 SHEET 4 AA1 4 ILE A 66 HIS A 69 -1 O GLU A 68 N TYR A 5 SHEET 1 AA2 2 GLU A 59 LEU A 60 0 SHEET 2 AA2 2 GLU A 63 ARG A 64 -1 O GLU A 63 N LEU A 60 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL MODEL 16 ENDMDL MODEL 17 ENDMDL MODEL 18 ENDMDL MODEL 19 ENDMDL MODEL 20 ENDMDL MASTER 163 0 0 2 6 0 0 6 611 1 0 6 END