HEADER TOXIN 16-MAY-25 9R8G TITLE PSEUDOMONAS PUTIDA PORE-FORMING TOXIN TKE5 IN COMPLEX WITH ITS COGNATE TITLE 2 TYPE VI ADAPTOR PROTEIN TAP3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOXIN VASX N-TERMINAL REGION DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DUF4123 DOMAIN-CONTAINING PROTEIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA KT2440; SOURCE 3 ORGANISM_TAXID: 160488; SOURCE 4 GENE: PP_2612; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA KT2440; SOURCE 9 ORGANISM_TAXID: 160488; SOURCE 10 GENE: PP_2613; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PSEUDOMONAS PUTIDA T6SS EFFECTOR, PORE-FORMING TOXIN, MIX FAMILY KEYWDS 2 DOMAIN, ADAPTOR PROTEIN, TOXIN EXPDTA ELECTRON MICROSCOPY AUTHOR C.VELAZQUEZ,M.ZABALA-ZEARRETA,J.ALTUNA-ALVAREZ,D.ALBESA-JOVE REVDAT 1 14-JAN-26 9R8G 0 JRNL AUTH C.VELAZQUEZ,M.ZABALA-ZEARRETA,C.PAREDES,C.CIVANTOS, JRNL AUTH 2 J.ALTUNA-ALVAREZ,P.BERNAL,D.ALBESA-JOVE JRNL TITL STRUCTURAL INSIGHTS INTO THE ANTIBACTERIAL FUNCTION OF THE JRNL TITL 2 PSEUDOMONAS PUTIDA EFFECTOR TKE5 JRNL REF EMBO J. 2025 JRNL REFN ESSN 1460-2075 JRNL DOI 10.1038/S44318-025-00689-6 REMARK 2 REMARK 2 RESOLUTION. 2.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX, EPU REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.770 REMARK 3 NUMBER OF PARTICLES : 381732 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9R8G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-MAY-25. REMARK 100 THE DEPOSITION ID IS D_1292147524. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : PSEUDOMONAS PUTIDA PORE-FORMING REMARK 245 TOXIN TKE5 IN COMPLEX WITH ITS REMARK 245 COGNATE TYPE VI ADAPTOR PROTEIN REMARK 245 TAP3 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 2.20 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4880.00 REMARK 245 ILLUMINATION MODE : OTHER REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASN A 3 REMARK 465 ALA A 4 REMARK 465 SER A 5 REMARK 465 VAL A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 ALA A 9 REMARK 465 THR A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 PRO A 13 REMARK 465 ALA A 14 REMARK 465 CYS A 15 REMARK 465 SER A 16 REMARK 465 LEU A 267 REMARK 465 GLU A 268 REMARK 465 HIS A 269 REMARK 465 THR A 270 REMARK 465 LYS A 271 REMARK 465 PRO A 272 REMARK 465 ALA A 273 REMARK 465 SER A 730 REMARK 465 SER A 731 REMARK 465 ASP A 732 REMARK 465 ILE A 733 REMARK 465 PHE A 734 REMARK 465 LYS A 735 REMARK 465 ALA A 736 REMARK 465 ILE A 737 REMARK 465 ARG A 738 REMARK 465 GLN A 739 REMARK 465 TRP A 740 REMARK 465 GLN A 741 REMARK 465 ASN A 742 REMARK 465 GLY A 743 REMARK 465 ASN A 744 REMARK 465 LEU A 745 REMARK 465 ILE A 746 REMARK 465 SER A 747 REMARK 465 GLY A 748 REMARK 465 LEU A 749 REMARK 465 TYR A 750 REMARK 465 THR A 751 REMARK 465 ALA A 752 REMARK 465 ALA A 753 REMARK 465 ALA A 754 REMARK 465 SER A 755 REMARK 465 ALA A 756 REMARK 465 THR A 757 REMARK 465 ASP A 886 REMARK 465 ILE A 887 REMARK 465 ASN A 888 REMARK 465 ASN A 889 REMARK 465 LYS A 890 REMARK 465 TRP A 891 REMARK 465 PRO A 892 REMARK 465 THR A 893 REMARK 465 PRO A 894 REMARK 465 ASP A 895 REMARK 465 TRP A 896 REMARK 465 ALA A 897 REMARK 465 THR A 898 REMARK 465 ILE A 899 REMARK 465 ILE A 900 REMARK 465 HIS A 901 REMARK 465 THR A 902 REMARK 465 GLN A 903 REMARK 465 VAL A 904 REMARK 465 THR A 905 REMARK 465 LYS A 906 REMARK 465 GLN A 907 REMARK 465 ASN A 908 REMARK 465 ALA A 909 REMARK 465 MET B -10 REMARK 465 GLY B -9 REMARK 465 SER B -8 REMARK 465 SER B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 THR B 3 REMARK 465 LEU B 4 REMARK 465 SER B 5 REMARK 465 SER B 6 REMARK 465 PRO B 7 REMARK 465 PRO B 8 REMARK 465 PRO B 9 REMARK 465 ARG B 10 REMARK 465 SER B 11 REMARK 465 GLU B 12 REMARK 465 GLU B 303 REMARK 465 PRO B 304 REMARK 465 ALA B 305 REMARK 465 HIS B 306 REMARK 465 ASP B 307 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 34 CG OD1 OD2 REMARK 470 CYS A 38 SG REMARK 470 GLN A 98 CG CD OE1 NE2 REMARK 470 GLU A 165 CG CD OE1 OE2 REMARK 470 TRP A 226 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 226 CZ3 CH2 REMARK 470 LYS A 230 CG CD CE NZ REMARK 470 GLU A 265 CG CD OE1 OE2 REMARK 470 GLN A 266 CG CD OE1 NE2 REMARK 470 GLN A 274 CG CD OE1 NE2 REMARK 470 GLU A 277 CG CD OE1 OE2 REMARK 470 GLN A 278 CG CD OE1 NE2 REMARK 470 ARG A 280 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 281 CG1 CG2 REMARK 470 SER A 293 OG REMARK 470 ASP A 298 CG OD1 OD2 REMARK 470 LYS A 311 CG CD CE NZ REMARK 470 TYR A 317 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 326 CG CD1 CD2 REMARK 470 PHE A 329 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 330 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 331 CG CD1 CD2 REMARK 470 ARG A 335 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 336 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 344 CG CD OE1 OE2 REMARK 470 SER A 345 OG REMARK 470 HIS A 346 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 348 CG CD OE1 NE2 REMARK 470 HIS A 352 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 353 CG CD OE1 OE2 REMARK 470 ASP A 354 CG OD1 OD2 REMARK 470 GLN A 364 CG CD OE1 NE2 REMARK 470 LEU A 381 CG CD1 CD2 REMARK 470 ARG A 383 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 428 CG CD OE1 OE2 REMARK 470 ASN A 500 CG OD1 ND2 REMARK 470 VAL A 501 CG1 CG2 REMARK 470 LYS A 529 CG CD CE NZ REMARK 470 SER A 540 OG REMARK 470 HIS A 541 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 560 CG CD1 CD2 REMARK 470 GLU A 571 CG CD OE1 OE2 REMARK 470 GLN A 572 CG CD OE1 NE2 REMARK 470 SER A 589 OG REMARK 470 GLU A 596 CG CD OE1 OE2 REMARK 470 MET A 597 CG SD CE REMARK 470 LEU A 600 CG CD1 CD2 REMARK 470 ARG A 601 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 602 CG1 CG2 CD1 REMARK 470 SER A 605 OG REMARK 470 ARG A 606 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 612 CG CD1 CD2 REMARK 470 THR A 614 OG1 CG2 REMARK 470 ARG A 617 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 655 CG CD CE NZ REMARK 470 SER A 656 OG REMARK 470 ASP A 657 CG OD1 OD2 REMARK 470 LEU A 663 CG CD1 CD2 REMARK 470 SER A 667 OG REMARK 470 VAL A 683 CG1 CG2 REMARK 470 MET A 690 CG SD CE REMARK 470 LYS A 693 CG CD CE NZ REMARK 470 SER A 696 OG REMARK 470 ARG A 718 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 729 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR A 758 OG1 CG2 REMARK 470 SER A 769 OG REMARK 470 ILE A 772 CG1 CG2 CD1 REMARK 470 THR A 776 OG1 CG2 REMARK 470 LEU A 796 CG CD1 CD2 REMARK 470 ILE A 797 CG1 CG2 CD1 REMARK 470 LEU A 801 CG CD1 CD2 REMARK 470 TYR A 804 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 806 CG CD CE NZ REMARK 470 HIS A 808 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 810 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 811 CG CD1 CD2 REMARK 470 SER A 822 OG REMARK 470 THR A 826 OG1 CG2 REMARK 470 ARG A 827 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 832 CG CD OE1 OE2 REMARK 470 ILE A 833 CG1 CG2 CD1 REMARK 470 ARG A 834 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 835 CG OD1 OD2 REMARK 470 ASN A 836 CG OD1 ND2 REMARK 470 ILE A 837 CG1 CG2 CD1 REMARK 470 LYS A 838 CG CD CE NZ REMARK 470 ASP A 840 CG OD1 OD2 REMARK 470 PHE A 841 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 842 CG OD1 OD2 REMARK 470 LYS A 843 CG CD CE NZ REMARK 470 ARG A 849 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 851 CG1 CG2 CD1 REMARK 470 HIS A 852 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 853 CG CD OE1 OE2 REMARK 470 GLU A 854 CG CD OE1 OE2 REMARK 470 GLN A 859 CG CD OE1 NE2 REMARK 470 GLU A 861 CG CD OE1 OE2 REMARK 470 PHE A 862 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PRO A 865 CG CD REMARK 470 LEU A 869 CG CD1 CD2 REMARK 470 TYR A 872 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 874 CG CD OE1 OE2 REMARK 470 GLN A 875 CG CD OE1 NE2 REMARK 470 LEU A 876 CG CD1 CD2 REMARK 470 LEU A 878 CG CD1 CD2 REMARK 470 LEU A 881 CG CD1 CD2 REMARK 470 THR A 882 OG1 CG2 REMARK 470 HIS A 884 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 885 CG CD1 CD2 REMARK 470 THR A 910 OG1 CG2 REMARK 470 LEU A 911 CG CD1 CD2 REMARK 470 GLU A 912 CG CD OE1 OE2 REMARK 470 LEU A 913 CG CD1 CD2 REMARK 470 GLU A 926 CG CD OE1 OE2 REMARK 470 VAL A 932 CG1 CG2 REMARK 470 SER A 933 OG REMARK 470 GLN A 934 CG CD OE1 NE2 REMARK 470 ASN A 935 CG OD1 ND2 REMARK 470 LEU A 936 CG CD1 CD2 REMARK 470 ASP A 937 CG OD1 OD2 REMARK 470 ARG A 938 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 939 CG CD OE1 NE2 REMARK 470 THR A 940 OG1 CG2 REMARK 470 THR A 941 OG1 CG2 REMARK 470 LEU A 943 CG CD1 CD2 REMARK 470 GLN A 944 CG CD OE1 NE2 REMARK 470 ILE A 945 CG1 CG2 CD1 REMARK 470 ASN A 946 CG OD1 ND2 REMARK 470 ASP A 948 CG OD1 OD2 REMARK 470 HIS A 950 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 951 CG1 CG2 CD1 REMARK 470 THR A 952 OG1 CG2 REMARK 470 GLN A 953 CG CD OE1 NE2 REMARK 470 LEU A 956 CG CD1 CD2 REMARK 470 LEU A 958 CG CD1 CD2 REMARK 470 LYS A 961 CG CD CE NZ REMARK 470 THR A 962 OG1 CG2 REMARK 470 ASP A 963 CG OD1 OD2 REMARK 470 ARG A 965 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 966 CG CD OE1 NE2 REMARK 470 ILE A 967 CG1 CG2 CD1 REMARK 470 ARG A 968 CG CD NE CZ NH1 NH2 REMARK 470 SER A 969 OG REMARK 470 THR A 971 OG1 CG2 REMARK 470 LEU A 972 CG CD1 CD2 REMARK 470 THR A 973 OG1 CG2 REMARK 470 ASN A 975 CG OD1 ND2 REMARK 470 ASP A 983 CG OD1 OD2 REMARK 470 ASP A 984 CG OD1 OD2 REMARK 470 ASP A 985 CG OD1 OD2 REMARK 470 THR A 986 OG1 CG2 REMARK 470 SER A 988 OG REMARK 470 THR A 989 OG1 CG2 REMARK 470 THR A 990 OG1 CG2 REMARK 470 THR A 991 OG1 CG2 REMARK 470 ILE A 992 CG1 CG2 CD1 REMARK 470 HIS A 993 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 994 CG CD1 CD2 REMARK 470 GLU A 995 CG CD OE1 OE2 REMARK 470 ARG A 996 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 13 CG OD1 OD2 REMARK 470 ARG B 19 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 41 CG CD OE1 OE2 REMARK 470 ASN B 60 CG OD1 ND2 REMARK 470 GLN B 62 CG CD OE1 NE2 REMARK 470 LYS B 63 CG CD CE NZ REMARK 470 ASP B 87 CG OD1 OD2 REMARK 470 GLU B 111 CG CD OE1 OE2 REMARK 470 VAL B 139 CG1 CG2 REMARK 470 LEU B 144 CG CD1 CD2 REMARK 470 ASP B 154 CG OD1 OD2 REMARK 470 LYS B 179 CG CD CE NZ REMARK 470 GLU B 182 CG CD OE1 OE2 REMARK 470 LYS B 184 CG CD CE NZ REMARK 470 LEU B 194 CG CD1 CD2 REMARK 470 LEU B 198 CG CD1 CD2 REMARK 470 GLN B 199 CG CD OE1 NE2 REMARK 470 GLN B 200 CG CD OE1 NE2 REMARK 470 LEU B 201 CG CD1 CD2 REMARK 470 GLU B 202 CG CD OE1 OE2 REMARK 470 LEU B 203 CG CD1 CD2 REMARK 470 ASP B 204 CG OD1 OD2 REMARK 470 GLN B 207 CG CD OE1 NE2 REMARK 470 GLU B 212 CG CD OE1 OE2 REMARK 470 ASN B 230 CG OD1 ND2 REMARK 470 ASP B 235 CG OD1 OD2 REMARK 470 LEU B 238 CG CD1 CD2 REMARK 470 GLU B 256 CG CD OE1 OE2 REMARK 470 VAL B 257 CG1 CG2 REMARK 470 LYS B 276 CG CD CE NZ REMARK 470 LYS B 302 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 98 36.39 -98.94 REMARK 500 GLU A 277 58.36 -96.88 REMARK 500 VAL A 368 -58.54 66.47 REMARK 500 PHE A 509 85.90 -155.12 REMARK 500 SER A 605 147.43 -174.31 REMARK 500 THR A 614 4.00 -68.83 REMARK 500 ALA A 658 65.62 -155.21 REMARK 500 THR A 697 63.36 -100.02 REMARK 500 ALA A 880 53.97 -90.70 REMARK 500 LEU B 72 49.64 -91.52 REMARK 500 TRP B 172 76.52 -100.39 REMARK 500 ILE B 186 -63.05 -109.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-53820 RELATED DB: EMDB REMARK 900 PSEUDOMONAS PUTIDA PORE-FORMING TOXIN TKE5 IN COMPLEX WITH ITS REMARK 900 COGNATE TYPE VI ADAPTOR PROTEIN TAP3 DBREF 9R8G A 1 996 UNP Q88JN7 Q88JN7_PSEPK 1 996 DBREF 9R8G B 1 307 UNP Q88JN6 Q88JN6_PSEPK 10 316 SEQADV 9R8G MET B -10 UNP Q88JN6 INITIATING METHIONINE SEQADV 9R8G GLY B -9 UNP Q88JN6 EXPRESSION TAG SEQADV 9R8G SER B -8 UNP Q88JN6 EXPRESSION TAG SEQADV 9R8G SER B -7 UNP Q88JN6 EXPRESSION TAG SEQADV 9R8G HIS B -6 UNP Q88JN6 EXPRESSION TAG SEQADV 9R8G HIS B -5 UNP Q88JN6 EXPRESSION TAG SEQADV 9R8G HIS B -4 UNP Q88JN6 EXPRESSION TAG SEQADV 9R8G HIS B -3 UNP Q88JN6 EXPRESSION TAG SEQADV 9R8G HIS B -2 UNP Q88JN6 EXPRESSION TAG SEQADV 9R8G HIS B -1 UNP Q88JN6 EXPRESSION TAG SEQADV 9R8G SER B 0 UNP Q88JN6 EXPRESSION TAG SEQRES 1 A 996 MET THR ASN ALA SER VAL SER SER ALA THR SER GLY PRO SEQRES 2 A 996 ALA CYS SER ALA ARG VAL PRO ILE LEU PRO VAL ARG TYR SEQRES 3 A 996 ALA ILE VAL PRO ARG THR ALA ASP ALA PRO ALA CYS ARG SEQRES 4 A 996 TYR ALA ASP ALA GLY PHE ASN LEU GLU GLN GLY PHE PRO SEQRES 5 A 996 THR LEU GLN HIS SER ALA TYR THR LEU ARG ALA LEU ARG SEQRES 6 A 996 PRO GLY TYR VAL TYR VAL PHE MET LYS GLY PRO ARG GLY SEQRES 7 A 996 GLU LYS LEU VAL ILE HIS GLU TYR VAL GLY ALA GLY LEU SEQRES 8 A 996 TYR LYS GLU LEU ARG TYR GLN GLY LEU GLU ASP TYR HIS SEQRES 9 A 996 ARG ARG GLU ARG TYR LEU SER GLY GLN SER THR GLY TRP SEQRES 10 A 996 VAL TRP ALA ASP THR CYS GLN ASP THR ALA GLU GLU VAL SEQRES 11 A 996 TRP ILE GLY TYR SER PRO HIS LEU TRP THR ASN ALA ILE SEQRES 12 A 996 THR ALA ARG ILE THR GLY SER ALA ALA LEU ARG LYS ARG SEQRES 13 A 996 HIS MET ARG GLN LEU ASP MET ALA GLU LEU VAL SER GLY SEQRES 14 A 996 ASN GLN ALA PRO SER THR GLN PRO HIS VAL LEU PRO VAL SEQRES 15 A 996 SER ALA LEU GLN THR TRP VAL GLU ASP PHE LYS PRO THR SEQRES 16 A 996 GLU ARG ARG MET PRO LEU THR TRP SER SER ASP PRO VAL SEQRES 17 A 996 THR GLU THR LEU PRO ILE GLY ASN LEU HIS ALA ILE ALA SEQRES 18 A 996 ARG HIS TYR PRO TRP THR GLN PRO LYS VAL PRO VAL VAL SEQRES 19 A 996 VAL ALA LEU ALA ASP ALA GLU GLY MET ALA LEU ASP LEU SEQRES 20 A 996 SER LEU SER VAL SER ALA TYR GLN HIS GLN LEU ARG ASP SEQRES 21 A 996 LEU MET PRO ALA GLU GLN LEU GLU HIS THR LYS PRO ALA SEQRES 22 A 996 GLN PRO PRO GLU GLN GLU ARG VAL PRO ALA CYS TYR ARG SEQRES 23 A 996 LEU ASP ALA GLU GLN LEU SER PRO GLN SER ARG ASP PHE SEQRES 24 A 996 HIS HIS ARG ASN LEU VAL ALA MET LEU LEU ASN LYS THR SEQRES 25 A 996 LEU GLU SER LEU TYR PRO ALA ASP ALA PRO SER PRO GLU SEQRES 26 A 996 LEU ALA ALA PHE ARG LEU GLY THR SER ARG ARG GLY PRO SEQRES 27 A 996 ALA LEU SER PRO ALA GLU SER HIS PHE GLN ALA LEU THR SEQRES 28 A 996 HIS GLU ASP TYR SER PRO ASN GLY ALA ARG LEU ALA GLN SEQRES 29 A 996 ARG LEU ASP VAL ASP LYS TYR ARG ARG PHE LEU ALA GLU SEQRES 30 A 996 ARG ASP ALA LEU GLU ARG ARG ILE ALA ALA LEU ARG ASN SEQRES 31 A 996 LEU ALA LEU GLN ALA SER ASN ASP HIS ASP ALA TRP LEU SEQRES 32 A 996 ALA THR ALA GLU PRO GLN HIS ILE ASP ASN PRO TYR SER SEQRES 33 A 996 LEU ALA ALA ALA LEU ALA CYS TYR ASP ARG ASP GLU ARG SEQRES 34 A 996 THR SER ALA ARG GLY LEU GLU ILE SER LEU ALA LEU LEU SEQRES 35 A 996 ILE HIS PRO MET GLY GLN PRO THR PRO GLY THR GLU ASP SEQRES 36 A 996 HIS ASP ARG ARG PHE LYS ARG LEU GLU GLN TRP LEU ASP SEQRES 37 A 996 GLN HIS ASP SER PRO LEU TYR THR ALA LEU ALA PRO PHE SEQRES 38 A 996 ASN PRO PHE LYS ASP LYS ALA ASP SER ILE GLY THR LEU SEQRES 39 A 996 PHE GLY ALA SER ASP ASN VAL ILE GLU GLY LEU ALA GLY SEQRES 40 A 996 ARG PHE PRO ALA MET ALA ASP ILE THR ASP LEU THR ALA SEQRES 41 A 996 GLN SER VAL ASN THR VAL VAL LEU LYS ARG LEU ARG GLY SEQRES 42 A 996 GLN THR ARG TRP ASP ALA SER HIS GLY LEU ARG ARG GLN SEQRES 43 A 996 VAL GLN LEU ALA ALA ARG GLU ALA ASN ALA GLU LYS ALA SEQRES 44 A 996 LEU GLY LEU LEU ALA ALA ARG TYR ARG ILE THR GLU GLN SEQRES 45 A 996 ALA ILE THR GLU ASN PRO PHE SER GLN GLU VAL GLN ARG SEQRES 46 A 996 TYR LEU LYS SER GLY MET ALA GLN VAL GLU GLU MET LYS SEQRES 47 A 996 ALA LEU ARG ILE SER GLY SER ARG THR VAL SER ILE GLU SEQRES 48 A 996 LEU THR THR THR ALA ARG ALA LYS PRO ASN PHE LEU GLY SEQRES 49 A 996 LEU LEU THR SER GLY GLY GLY GLY GLY LEU ASN ALA GLY SEQRES 50 A 996 MET LEU TRP PHE ASN ILE LEU SER LEU LYS THR ALA TYR SEQRES 51 A 996 ASN SER LEU GLN LYS SER ASP ALA PRO GLU TYR THR LEU SEQRES 52 A 996 GLY PHE ALA SER SER VAL PHE GLY VAL ILE GLY ALA ALA SEQRES 53 A 996 ALA ALA THR LEU VAL SER VAL ARG ALA THR GLN LYS ALA SEQRES 54 A 996 MET MET LEU LYS TRP ILE SER THR ALA PRO GLY MET ALA SEQRES 55 A 996 PHE GLY ASN GLY ILE ILE ASN PHE LEU THR SER ASN LEU SEQRES 56 A 996 PHE ALA ARG ALA SER GLY TYR PRO ALA ILE ILE MET GLY SEQRES 57 A 996 PHE SER SER ASP ILE PHE LYS ALA ILE ARG GLN TRP GLN SEQRES 58 A 996 ASN GLY ASN LEU ILE SER GLY LEU TYR THR ALA ALA ALA SEQRES 59 A 996 SER ALA THR THR ALA LEU GLY SER ILE LEU VAL LEU GLU SEQRES 60 A 996 GLY SER LEU ALA ILE ALA GLY THR THR VAL LEU ILE PRO SEQRES 61 A 996 PHE ALA GLY TRP THR ALA ALA GLY ILE ALA LEU ILE GLY SEQRES 62 A 996 ALA THR LEU ILE GLY GLY GLY LEU PHE LEU TYR SER LYS SEQRES 63 A 996 ALA HIS SER ARG LEU HIS SER PRO LEU GLU LEU TRP ALA SEQRES 64 A 996 SER ARG SER ILE PHE GLY THR ARG GLU ASN ASP GLY GLU SEQRES 65 A 996 ILE ARG ASP ASN ILE LYS LEU ASP PHE ASP LYS LYS LEU SEQRES 66 A 996 PRO PRO PHE ARG HIS ILE HIS GLU GLU ILE LYS SER TRP SEQRES 67 A 996 GLN ILE GLU PHE PHE SER PRO LYS ALA LEU LEU ALA PRO SEQRES 68 A 996 TYR SER GLU GLN LEU GLY LEU GLY ALA LEU THR THR HIS SEQRES 69 A 996 LEU ASP ILE ASN ASN LYS TRP PRO THR PRO ASP TRP ALA SEQRES 70 A 996 THR ILE ILE HIS THR GLN VAL THR LYS GLN ASN ALA THR SEQRES 71 A 996 LEU GLU LEU THR ILE LEU LEU PRO GLU PHE VAL VAL GLY SEQRES 72 A 996 GLN SER GLU TRP SER GLY SER LEU VAL SER GLN ASN LEU SEQRES 73 A 996 ASP ARG GLN THR THR PRO LEU GLN ILE ASN PRO ASP CYS SEQRES 74 A 996 HIS ILE THR GLN ALA GLY LEU LEU LEU HIS TYR LYS THR SEQRES 75 A 996 ASP ALA ARG GLN ILE ARG SER ALA THR LEU THR ILE ASN SEQRES 76 A 996 TYR TYR ALA ASN GLN GLY LEU ASP ASP ASP THR PRO SER SEQRES 77 A 996 THR THR THR ILE HIS LEU GLU ARG SEQRES 1 B 318 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER MET THR SEQRES 2 B 318 THR LEU SER SER PRO PRO PRO ARG SER GLU ASP PHE ALA SEQRES 3 B 318 HIS ASN CYS ARG PHE LEU LEU LEU MET THR SER ALA ILE SEQRES 4 B 318 GLU ASN TRP ALA TYR ARG PRO ILE PRO GLN GLU GLY GLU SEQRES 5 B 318 LEU VAL PRO ALA TYR ALA PRO SER VAL LEU ASP LEU ILE SEQRES 6 B 318 ASN ALA VAL SER ARG ASN THR GLN LYS ALA TRP LEU TRP SEQRES 7 B 318 LYS ASN SER ALA LEU ASP ASP ARG HIS GLU PHE GLY PRO SEQRES 8 B 318 LEU LEU VAL ASP VAL ALA ASP ALA HIS GLU LEU LEU ALA SEQRES 9 B 318 HIS ALA ILE THR THR TRP MET PRO ILE GLY GLY ALA ILE SEQRES 10 B 318 ALA LEU ASP ALA GLU VAL GLY LEU ALA ALA LEU ALA ASP SEQRES 11 B 318 HIS PHE THR SER LEU VAL GLN VAL VAL LEU PRO ASP HIS SEQRES 12 B 318 SER VAL ALA THR HIS HIS VAL THR PRO ASP HIS LEU ALA SEQRES 13 B 318 ALA TRP LEU ASN ALA LEU ASP ASP ASP HIS ARG LYS ALA SEQRES 14 B 318 TRP LEU GLY PRO VAL SER ARG LEU ALA TRP ARG VAL ASN SEQRES 15 B 318 TRP GLY PRO ALA HIS GLU TRP LYS THR HIS GLU ASN LYS SEQRES 16 B 318 PRO ILE ALA ALA ARG SER LYS SER GLU LEU PRO LEU THR SEQRES 17 B 318 LEU GLN GLN LEU GLU LEU ASP ARG LEU GLN ALA GLY MET SEQRES 18 B 318 HIS GLU HIS PHE VAL LEU SER LEU ALA HIS GLU VAL LEU SEQRES 19 B 318 ALA MET PRO PRO HIS ALA ASN HIS THR LEU ALA ASP ILE SEQRES 20 B 318 ARG LEU TRP ILE GLU THR LEU LEU PRO GLN LEU THR ALA SEQRES 21 B 318 LEU ASN PHE ARG SER GLU GLU VAL ALA GLY GLN PHE ILE SEQRES 22 B 318 ARG LEU ILE ALA GLY HIS MET TRP LEU MET SER ASN ASP SEQRES 23 B 318 LYS ALA GLY LYS ILE TYR THR ASN LEU GLU GLU SER PRO SEQRES 24 B 318 GLN ALA ARG LEU ARG GLU LEU GLN ALA LEU VAL GLU SER SEQRES 25 B 318 LYS GLU PRO ALA HIS ASP HELIX 1 AA1 CYS A 38 ASP A 42 5 5 HELIX 2 AA2 THR A 140 GLY A 149 1 10 HELIX 3 AA3 SER A 150 MET A 158 1 9 HELIX 4 AA4 ASP A 162 VAL A 167 1 6 HELIX 5 AA5 PRO A 181 SER A 183 5 3 HELIX 6 AA6 ALA A 184 VAL A 189 1 6 HELIX 7 AA7 ILE A 214 ALA A 221 1 8 HELIX 8 AA8 ASP A 239 ASP A 260 1 22 HELIX 9 AA9 SER A 293 LEU A 316 1 24 HELIX 10 AB1 SER A 323 ARG A 335 1 13 HELIX 11 AB2 SER A 341 THR A 351 1 11 HELIX 12 AB3 ASN A 358 ARG A 365 1 8 HELIX 13 AB4 VAL A 368 ALA A 404 1 37 HELIX 14 AB5 THR A 405 ILE A 411 5 7 HELIX 15 AB6 SER A 416 ALA A 422 1 7 HELIX 16 AB7 GLU A 428 HIS A 444 1 17 HELIX 17 AB8 PRO A 445 GLN A 448 5 4 HELIX 18 AB9 ASP A 457 GLN A 469 1 13 HELIX 19 AC1 SER A 472 ALA A 479 1 8 HELIX 20 AC2 PHE A 481 GLY A 492 1 12 HELIX 21 AC3 SER A 498 PHE A 509 1 12 HELIX 22 AC4 ILE A 515 ARG A 530 1 16 HELIX 23 AC5 GLY A 542 ALA A 554 1 13 HELIX 24 AC6 ALA A 556 TYR A 567 1 12 HELIX 25 AC7 THR A 570 ASN A 577 1 8 HELIX 26 AC8 ASN A 577 GLY A 604 1 28 HELIX 27 AC9 SER A 609 THR A 614 1 6 HELIX 28 AD1 ASN A 621 GLY A 630 1 10 HELIX 29 AD2 ASN A 635 LYS A 655 1 21 HELIX 30 AD3 THR A 662 THR A 679 1 18 HELIX 31 AD4 VAL A 683 ILE A 695 1 13 HELIX 32 AD5 SER A 696 ALA A 698 5 3 HELIX 33 AD6 GLY A 700 THR A 712 1 13 HELIX 34 AD7 GLY A 721 GLY A 728 1 8 HELIX 35 AD8 ALA A 759 LEU A 770 1 12 HELIX 36 AD9 ALA A 771 ALA A 773 5 3 HELIX 37 AE1 GLY A 774 GLY A 793 1 20 HELIX 38 AE2 GLY A 798 PHE A 802 5 5 HELIX 39 AE3 SER A 813 ARG A 821 1 9 HELIX 40 AE4 HIS A 850 PHE A 863 1 14 HELIX 41 AE5 LEU A 869 LEU A 876 1 8 HELIX 42 AE6 MET B 24 ALA B 32 1 9 HELIX 43 AE7 SER B 49 SER B 58 1 10 HELIX 44 AE8 ARG B 75 GLY B 79 5 5 HELIX 45 AE9 ALA B 88 TRP B 99 1 12 HELIX 46 AF1 MET B 100 GLY B 103 5 4 HELIX 47 AF2 GLY B 113 SER B 123 1 11 HELIX 48 AF3 THR B 140 LEU B 151 1 12 HELIX 49 AF4 ASP B 152 GLY B 161 1 10 HELIX 50 AF5 GLN B 199 ALA B 224 1 26 HELIX 51 AF6 MET B 225 ALA B 229 5 5 HELIX 52 AF7 THR B 232 LEU B 250 1 19 HELIX 53 AF8 SER B 254 HIS B 268 1 15 HELIX 54 AF9 MET B 269 ASN B 274 1 6 HELIX 55 AG1 ASN B 274 THR B 282 1 9 HELIX 56 AG2 SER B 287 SER B 301 1 15 SHEET 1 AA1 3 SER A 57 ALA A 63 0 SHEET 2 AA1 3 VAL A 19 PRO A 30 -1 N VAL A 29 O ALA A 58 SHEET 3 AA1 3 VAL A 118 ALA A 120 -1 O VAL A 118 N ILE A 21 SHEET 1 AA2 4 SER A 57 ALA A 63 0 SHEET 2 AA2 4 VAL A 19 PRO A 30 -1 N VAL A 29 O ALA A 58 SHEET 3 AA2 4 VAL A 233 ALA A 238 1 O VAL A 233 N LEU A 22 SHEET 4 AA2 4 VAL A 179 LEU A 180 -1 N LEU A 180 O VAL A 234 SHEET 1 AA3 5 TYR A 92 GLU A 94 0 SHEET 2 AA3 5 GLU A 79 TYR A 86 -1 N GLU A 85 O LYS A 93 SHEET 3 AA3 5 GLY A 67 LYS A 74 -1 N GLY A 67 O TYR A 86 SHEET 4 AA3 5 GLU A 129 SER A 135 -1 O GLY A 133 N TYR A 70 SHEET 5 AA3 5 ARG A 159 LEU A 161 -1 O LEU A 161 N VAL A 130 SHEET 1 AA4 2 ARG A 606 THR A 607 0 SHEET 2 AA4 2 HIS A 950 ILE A 951 -1 O ILE A 951 N ARG A 606 SHEET 1 AA5 3 LYS A 866 ALA A 867 0 SHEET 2 AA5 3 LEU A 911 PRO A 918 -1 O LEU A 916 N LYS A 866 SHEET 3 AA5 3 GLY A 955 THR A 962 -1 O THR A 962 N LEU A 911 SHEET 1 AA6 4 THR A 940 PRO A 942 0 SHEET 2 AA6 4 GLU A 926 GLN A 934 -1 N SER A 933 O THR A 941 SHEET 3 AA6 4 SER A 969 TYR A 977 -1 O THR A 971 N VAL A 932 SHEET 4 AA6 4 SER A 988 GLU A 995 -1 O LEU A 994 N ALA A 970 SHEET 1 AA7 6 GLN B 62 TRP B 65 0 SHEET 2 AA7 6 LEU B 81 ASP B 84 -1 O ASP B 84 N GLN B 62 SHEET 3 AA7 6 PHE B 20 LEU B 23 -1 N LEU B 23 O LEU B 81 SHEET 4 AA7 6 ALA B 105 ALA B 110 -1 O ILE B 106 N LEU B 22 SHEET 5 AA7 6 VAL B 163 VAL B 170 -1 O SER B 164 N ASP B 109 SHEET 6 AA7 6 GLU B 177 GLU B 182 -1 O HIS B 181 N LEU B 166 SHEET 1 AA8 2 GLN B 126 VAL B 128 0 SHEET 2 AA8 2 VAL B 134 THR B 136 -1 O ALA B 135 N VAL B 127 CISPEP 1 GLN A 228 PRO A 229 0 1.55 CISPEP 2 VAL A 231 PRO A 232 0 1.28 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 6620 ARG A 996 TER 8813 LYS B 302 MASTER 440 0 0 56 29 0 0 6 8811 2 0 102 END