HEADER TRANSCRIPTION 19-MAY-25 9R96 TITLE CRYO-EM STRUCTURE OF THE HUMAN MITOCHONDRIAL RNA POLYMERASE TITLE 2 TRANSCRIPTION INITIATION COMPLEX (POLRMT/TFAM/TFB2M/DNA/RNA) WITH A TITLE 3 SLIPPED 3-MER RNA (PPPGPGPA) AND GTP POISED FOR CATALYSIS (SLIPPED TITLE 4 PRE-IC4) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MTRPOL; COMPND 5 EC: 2.7.7.6; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NON-TEMPLATE STRAND DNA (56-MER); COMPND 9 CHAIN: N; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: TEMPLATE STRAND DNA (56-MER); COMPND 13 CHAIN: T; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: DIMETHYLADENOSINE TRANSFERASE 2, MITOCHONDRIAL; COMPND 17 CHAIN: B; COMPND 18 SYNONYM: HEPATITIS C VIRUS NS5A-TRANSACTIVATED PROTEIN 5,HCV NS5A- COMPND 19 TRANSACTIVATED PROTEIN 5,MITOCHONDRIAL 12S RRNA DIMETHYLASE 2, COMPND 20 MITOCHONDRIAL TRANSCRIPTION FACTOR B2,H-MTTFB,H-MTTFB2,HTFB2M,MTTFB2, COMPND 21 S-ADENOSYLMETHIONINE-6-N',N'-ADENOSYL(RRNA) DIMETHYLTRANSFERASE 2; COMPND 22 EC: 2.1.1.-; COMPND 23 ENGINEERED: YES; COMPND 24 MOL_ID: 5; COMPND 25 MOLECULE: RNA (5'-D(*(GTP))-R(P*GP*(3DA))-3'); COMPND 26 CHAIN: R; COMPND 27 ENGINEERED: YES; COMPND 28 MOL_ID: 6; COMPND 29 MOLECULE: TRANSCRIPTION FACTOR A, MITOCHONDRIAL; COMPND 30 CHAIN: C; COMPND 31 SYNONYM: MTTFA,MITOCHONDRIAL TRANSCRIPTION FACTOR 1,MTTF1, COMPND 32 TRANSCRIPTION FACTOR 6,TCF-6,TRANSCRIPTION FACTOR 6-LIKE 2; COMPND 33 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLRMT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: CODONPLUS RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPROEXHTB; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630; SOURCE 19 MOL_ID: 4; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_COMMON: HUMAN; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 GENE: TFB2M, NS5ATP5; SOURCE 24 EXPRESSION_SYSTEM: ESCHERICHIA COLI B; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 37762; SOURCE 26 EXPRESSION_SYSTEM_VARIANT: ARCTICEXPRESS; SOURCE 27 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 28 EXPRESSION_SYSTEM_PLASMID: PT7TEV-HMBP4; SOURCE 29 MOL_ID: 5; SOURCE 30 SYNTHETIC: YES; SOURCE 31 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 32 ORGANISM_TAXID: 32630; SOURCE 33 MOL_ID: 6; SOURCE 34 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 35 ORGANISM_COMMON: HUMAN; SOURCE 36 ORGANISM_TAXID: 9606; SOURCE 37 GENE: TFAM, TCF6, TCF6L2; SOURCE 38 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 39 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 40 EXPRESSION_SYSTEM_VARIANT: CODONPLUS RIL; SOURCE 41 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 42 EXPRESSION_SYSTEM_PLASMID: PPROEXHTB KEYWDS POLRMT, TFB2M, TFAM, TRANSCRIPTION, INITIATION, TRANSCRIPTION KEYWDS 2 INITIATION, POLYMERASE, H-MTRNAP, Y-MTRNAP, MTRNAP, RNA, DNA, RNAP, KEYWDS 3 RNA POLYMERASE, MITOCHONDRIA, MITOCHONDRIAL DNA, SLIPPAGE EXPDTA ELECTRON MICROSCOPY AUTHOR Q.GOOVAERTS,J.SHEN,Y.AJJUGAL,B.DE WIJNGAERT,S.S.PATEL,K.DAS REVDAT 3 03-SEP-25 9R96 1 JRNL REVDAT 2 06-AUG-25 9R96 1 JRNL REVDAT 1 30-JUL-25 9R96 0 JRNL AUTH J.SHEN,Q.GOOVAERTS,Y.AJJUGAL,B.DE WIJNGAERT,K.DAS,S.S.PATEL JRNL TITL HUMAN MITOCHONDRIAL RNA POLYMERASE STRUCTURES REVEAL JRNL TITL 2 TRANSCRIPTION START SITE AND SLIPPAGE MECHANISM. JRNL REF MOL.CELL V. 85 3137 2025 JRNL REFN ISSN 1097-2765 JRNL PMID 40712586 JRNL DOI 10.1016/J.MOLCEL.2025.07.002 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, EPU, CTFFIND, COOT, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : CORRELATION COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : 102.000 REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.100 REMARK 3 NUMBER OF PARTICLES : 155000 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9R96 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUN-25. REMARK 100 THE DEPOSITION ID IS D_1292148021. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HUMAN MITOCHONDRIAL RNA REMARK 245 POLYMERASE TRANSCRIPTION REMARK 245 INITIATION COMPLEX (POLRMT/TFAM/ REMARK 245 TFB2M/DNA/RNA) WITH A SLIPPED 3- REMARK 245 MER RNA (PPPGPGPA) AND GTP REMARK 245 POISED FOR CATALYSIS (SLIPPED REMARK 245 PRE-IC4); DNA (56-MER); REMARK 245 DIMETHYLADENOSINE TRANSFERASE 2, REMARK 245 MITOCHONDRIAL; TRANSCRIPTION REMARK 245 FACTOR A, MITOCHONDRIAL; DNA- REMARK 245 DIRECTED RNA POLYMERASE, REMARK 245 MITOCHONDRIAL REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.20 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : INCUBATED ON THE GRID FOR 5 REMARK 245 SECONDS PRIOR TO DOUBLE SIDED REMARK 245 BLOTTING FOR 3.5 SECONDS AT REMARK 245 FORCE 1 REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS GLACIOS REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 600.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1800.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 130000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, N, T, B, R, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 43 REMARK 465 ALA A 44 REMARK 465 SER A 45 REMARK 465 PRO A 46 REMARK 465 GLN A 47 REMARK 465 GLU A 48 REMARK 465 GLN A 49 REMARK 465 ASP A 50 REMARK 465 GLN A 51 REMARK 465 ASP A 52 REMARK 465 ARG A 53 REMARK 465 ARG A 54 REMARK 465 LYS A 55 REMARK 465 ASP A 56 REMARK 465 TRP A 57 REMARK 465 GLY A 58 REMARK 465 HIS A 59 REMARK 465 VAL A 60 REMARK 465 GLU A 61 REMARK 465 LEU A 62 REMARK 465 LEU A 63 REMARK 465 GLU A 64 REMARK 465 VAL A 65 REMARK 465 LEU A 66 REMARK 465 GLN A 67 REMARK 465 ALA A 68 REMARK 465 ARG A 69 REMARK 465 VAL A 70 REMARK 465 ARG A 71 REMARK 465 GLN A 72 REMARK 465 LEU A 73 REMARK 465 GLN A 74 REMARK 465 ALA A 75 REMARK 465 GLU A 76 REMARK 465 SER A 77 REMARK 465 VAL A 78 REMARK 465 SER A 79 REMARK 465 GLU A 80 REMARK 465 VAL A 81 REMARK 465 VAL A 82 REMARK 465 VAL A 83 REMARK 465 ASN A 84 REMARK 465 ARG A 85 REMARK 465 VAL A 86 REMARK 465 ASP A 87 REMARK 465 VAL A 88 REMARK 465 ALA A 89 REMARK 465 ARG A 90 REMARK 465 LEU A 91 REMARK 465 PRO A 92 REMARK 465 GLU A 93 REMARK 465 CYS A 94 REMARK 465 GLY A 95 REMARK 465 SER A 96 REMARK 465 GLY A 97 REMARK 465 ASP A 98 REMARK 465 GLY A 99 REMARK 465 SER A 100 REMARK 465 LEU A 101 REMARK 465 GLN A 102 REMARK 465 PRO A 103 REMARK 465 PRO A 104 REMARK 465 ARG A 105 REMARK 465 LYS A 106 REMARK 465 VAL A 107 REMARK 465 GLN A 108 REMARK 465 MET A 109 REMARK 465 GLY A 110 REMARK 465 ALA A 111 REMARK 465 LYS A 112 REMARK 465 ASP A 113 REMARK 465 ALA A 114 REMARK 465 THR A 115 REMARK 465 PRO A 116 REMARK 465 VAL A 117 REMARK 465 PRO A 118 REMARK 465 CYS A 119 REMARK 465 GLY A 120 REMARK 465 ARG A 121 REMARK 465 PRO A 147 REMARK 465 PHE A 148 REMARK 465 GLN A 149 REMARK 465 SER A 150 REMARK 465 GLY A 151 REMARK 465 GLU A 152 REMARK 465 PHE A 153 REMARK 465 LYS A 154 REMARK 465 ALA A 155 REMARK 465 LEU A 156 REMARK 465 GLY A 200 REMARK 465 LYS A 201 REMARK 465 LEU A 202 REMARK 465 SER A 203 REMARK 465 LEU A 204 REMARK 465 ASP A 205 REMARK 465 VAL A 206 REMARK 465 GLU A 207 REMARK 465 GLN A 208 REMARK 465 ALA A 209 REMARK 465 PRO A 210 REMARK 465 SER A 211 REMARK 465 GLY A 212 REMARK 465 GLN A 213 REMARK 465 HIS A 214 REMARK 465 SER A 215 REMARK 465 GLN A 216 REMARK 465 PRO A 741 REMARK 465 PRO A 742 REMARK 465 GLU A 743 REMARK 465 ALA A 744 REMARK 465 HIS A 745 REMARK 465 LEU A 746 REMARK 465 PRO A 747 REMARK 465 HIS A 748 REMARK 465 SER A 749 REMARK 465 ALA A 750 REMARK 465 ALA A 751 REMARK 465 PRO A 752 REMARK 465 ALA A 753 REMARK 465 ARG A 754 REMARK 465 DA N -2 REMARK 465 DT N -1 REMARK 465 DG N 0 REMARK 465 DT N 1 REMARK 465 DG N 2 REMARK 465 DG N 53 REMARK 465 DC T -1 REMARK 465 DC T 50 REMARK 465 DA T 51 REMARK 465 DC T 52 REMARK 465 DA T 53 REMARK 465 DT T 54 REMARK 465 PRO B 60 REMARK 465 PRO B 61 REMARK 465 ARG B 62 REMARK 465 LYS B 63 REMARK 465 ALA B 64 REMARK 465 SER B 65 REMARK 465 LYS B 66 REMARK 465 ALA B 67 REMARK 465 SER B 68 REMARK 465 LEU B 69 REMARK 465 ASP B 70 REMARK 465 MET C 16 REMARK 465 SER C 17 REMARK 465 TYR C 18 REMARK 465 TYR C 19 REMARK 465 HIS C 20 REMARK 465 HIS C 21 REMARK 465 HIS C 22 REMARK 465 HIS C 23 REMARK 465 HIS C 24 REMARK 465 HIS C 25 REMARK 465 ASP C 26 REMARK 465 TYR C 27 REMARK 465 ASP C 28 REMARK 465 ILE C 29 REMARK 465 PRO C 30 REMARK 465 THR C 31 REMARK 465 THR C 32 REMARK 465 GLU C 33 REMARK 465 ASN C 34 REMARK 465 LEU C 35 REMARK 465 TYR C 36 REMARK 465 PHE C 37 REMARK 465 GLN C 38 REMARK 465 GLY C 39 REMARK 465 ALA C 40 REMARK 465 MET C 41 REMARK 465 GLY C 42 REMARK 465 GLN C 171 REMARK 465 GLU C 172 REMARK 465 ALA C 173 REMARK 465 LYS C 174 REMARK 465 GLY C 175 REMARK 465 ASP C 176 REMARK 465 SER C 177 REMARK 465 PRO C 178 REMARK 465 ASN C 191 REMARK 465 LEU C 192 REMARK 465 SER C 193 REMARK 465 ASP C 194 REMARK 465 SER C 195 REMARK 465 GLU C 196 REMARK 465 LYS C 197 REMARK 465 ARG C 232 REMARK 465 ARG C 233 REMARK 465 THR C 234 REMARK 465 ILE C 235 REMARK 465 LYS C 236 REMARK 465 LYS C 237 REMARK 465 GLN C 238 REMARK 465 ARG C 239 REMARK 465 LYS C 240 REMARK 465 TYR C 241 REMARK 465 GLY C 242 REMARK 465 ALA C 243 REMARK 465 GLU C 244 REMARK 465 GLU C 245 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 ILE A 125 CG1 CG2 CD1 REMARK 470 ARG A 139 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 141 CG CD CE NZ REMARK 470 GLN A 145 CG CD OE1 NE2 REMARK 470 GLU A 176 CG CD OE1 OE2 REMARK 470 ARG A 180 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 184 CG CD OE1 OE2 REMARK 470 ARG A 193 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 381 CG OD1 OD2 REMARK 470 ARG A 383 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 947 CG CD OE1 OE2 REMARK 470 GLU A1016 CG CD OE1 OE2 REMARK 470 ASP A1019 CG OD1 OD2 REMARK 470 GLU A1042 CG CD OE1 OE2 REMARK 470 ILE A1106 CG1 CG2 CD1 REMARK 470 ARG B 73 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 138 CG CD CE NZ REMARK 470 ASN B 139 CG OD1 ND2 REMARK 470 LEU B 140 CG CD1 CD2 REMARK 470 ASP B 141 CG OD1 OD2 REMARK 470 GLU B 281 CG CD OE1 OE2 REMARK 470 ARG B 286 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 287 CG CD OE1 OE2 REMARK 470 LEU B 288 CG CD1 CD2 REMARK 470 LEU B 289 CG CD1 CD2 REMARK 470 ASP B 290 CG OD1 OD2 REMARK 470 GLN B 291 CG CD OE1 NE2 REMARK 470 LEU B 292 CG CD1 CD2 REMARK 470 GLN B 294 CG CD OE1 NE2 REMARK 470 GLN B 357 CG CD OE1 NE2 REMARK 470 GLU B 358 CG CD OE1 OE2 REMARK 470 ASP B 359 CG OD1 OD2 REMARK 470 LYS C 62 CG CD CE NZ REMARK 470 ILE C 81 CG1 CG2 CD1 REMARK 470 LEU C 91 CG CD1 CD2 REMARK 470 LYS C 95 CG CD CE NZ REMARK 470 LYS C 96 CG CD CE NZ REMARK 470 LYS C 131 CG CD CE NZ REMARK 470 ARG C 157 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 159 CG CD NE CZ NH1 NH2 REMARK 470 TYR C 162 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL C 164 CG1 CG2 REMARK 470 TYR C 165 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE C 170 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN C 179 CG CD OE1 NE2 REMARK 470 LEU C 182 CG CD1 CD2 REMARK 470 LYS C 183 CG CD CE NZ REMARK 470 LYS C 186 CG CD CE NZ REMARK 470 GLU C 198 CG CD OE1 OE2 REMARK 470 LEU C 199 CG CD1 CD2 REMARK 470 TYR C 200 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS C 205 CG CD CE NZ REMARK 470 ASP C 207 CG OD1 OD2 REMARK 470 ARG C 210 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 219 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT N 4 C2' DT N 4 C1' 0.064 REMARK 500 DT N 4 O3' DA N 5 P -0.129 REMARK 500 DA N 5 C2' DA N 5 C1' 0.064 REMARK 500 DA N 25 O3' DA N 26 P -0.085 REMARK 500 DT T 8 O3' DC T 9 P 0.093 REMARK 500 DC T 9 C3' DC T 9 C2' 0.103 REMARK 500 DC T 11 C3' DC T 11 C2' 0.084 REMARK 500 DC T 42 C3' DC T 42 C2' 0.122 REMARK 500 DC T 42 O4' DC T 42 C4' -0.074 REMARK 500 DA T 45 O3' DC T 46 P -0.093 REMARK 500 DT T 47 C3' DT T 47 C2' 0.105 REMARK 500 DT T 47 O4' DT T 47 C4' -0.125 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT N 4 O3' - P - OP2 ANGL. DEV. = 11.2 DEGREES REMARK 500 DT N 4 C3' - O3' - P ANGL. DEV. = -8.1 DEGREES REMARK 500 DA N 5 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DG N 9 C3' - O3' - P ANGL. DEV. = -11.2 DEGREES REMARK 500 DG N 14 C3' - O3' - P ANGL. DEV. = -8.4 DEGREES REMARK 500 DT N 15 C3' - O3' - P ANGL. DEV. = -11.4 DEGREES REMARK 500 DG N 20 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 DC T 9 O3' - P - OP1 ANGL. DEV. = 8.2 DEGREES REMARK 500 DC T 9 C4' - C3' - C2' ANGL. DEV. = -5.8 DEGREES REMARK 500 DA T 37 C3' - O3' - P ANGL. DEV. = -8.8 DEGREES REMARK 500 DC T 42 O4' - C4' - C3' ANGL. DEV. = 4.2 DEGREES REMARK 500 DC T 42 C3' - O3' - P ANGL. DEV. = -11.4 DEGREES REMARK 500 DC T 43 O3' - P - OP2 ANGL. DEV. = 9.2 DEGREES REMARK 500 DT T 47 C5' - C4' - O4' ANGL. DEV. = 10.3 DEGREES REMARK 500 DT T 47 C1' - O4' - C4' ANGL. DEV. = 5.0 DEGREES REMARK 500 GTP R 101 C3' - O3' - P ANGL. DEV. = -11.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 410 -1.03 73.00 REMARK 500 LEU A 467 33.17 -99.00 REMARK 500 ASN A 614 -136.17 57.05 REMARK 500 ALA A 662 -124.93 60.54 REMARK 500 ALA A 723 -151.27 -83.61 REMARK 500 SER A1018 -6.16 71.25 REMARK 500 PRO A1081 56.22 -92.73 REMARK 500 HIS A1150 -68.01 71.66 REMARK 500 ARG B 94 70.98 50.26 REMARK 500 ASP B 155 71.40 56.92 REMARK 500 SER B 216 -135.97 59.41 REMARK 500 TYR B 218 1.66 -65.88 REMARK 500 ASN B 243 79.22 -117.16 REMARK 500 PRO B 314 -6.40 -57.80 REMARK 500 LEU C 152 47.72 -82.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 922 OD1 REMARK 620 2 GLY A 923 O 70.0 REMARK 620 3 ASP A1151 OD2 104.1 93.9 REMARK 620 4 GTP A1301 O3G 89.5 84.4 164.9 REMARK 620 5 GTP A1301 O2B 149.9 88.3 97.7 67.2 REMARK 620 6 GTP A1301 O2A 135.0 154.6 84.8 90.4 66.9 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-51727 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-51728 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-51729 RELATED DB: EMDB REMARK 900 RELATED ID: 9GZM RELATED DB: PDB REMARK 900 RELATED ID: 9GZN RELATED DB: PDB REMARK 900 RELATED ID: 9GZO RELATED DB: PDB REMARK 900 RELATED ID: EMD-53854 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF THE HUMAN MITOCHONDRIAL RNA POLYMERASE REMARK 900 TRANSCRIPTION INITIATION COMPLEX (POLRMT/TFAM/TFB2M/DNA/RNA) WITH A REMARK 900 SLIPPED 3-MER RNA (PPPGPGPA) AND GTP POISED FOR CATALYSIS (SLIPPED REMARK 900 IC4) REMARK 900 RELATED ID: EMD-53853 RELATED DB: EMDB REMARK 900 RELATED ID: 9R95 RELATED DB: PDB DBREF 9R96 A 43 1230 UNP O00411 RPOM_HUMAN 43 1230 DBREF 9R96 N -2 53 PDB 9R96 9R96 -2 53 DBREF 9R96 T -1 54 PDB 9R96 9R96 -1 54 DBREF 9R96 B 60 396 UNP Q9H5Q4 TFB2M_HUMAN 60 396 DBREF 9R96 R 101 103 PDB 9R96 9R96 101 103 DBREF 9R96 C 43 245 UNP Q00059 TFAM_HUMAN 43 245 SEQADV 9R96 MET C 16 UNP Q00059 INITIATING METHIONINE SEQADV 9R96 SER C 17 UNP Q00059 EXPRESSION TAG SEQADV 9R96 TYR C 18 UNP Q00059 EXPRESSION TAG SEQADV 9R96 TYR C 19 UNP Q00059 EXPRESSION TAG SEQADV 9R96 HIS C 20 UNP Q00059 EXPRESSION TAG SEQADV 9R96 HIS C 21 UNP Q00059 EXPRESSION TAG SEQADV 9R96 HIS C 22 UNP Q00059 EXPRESSION TAG SEQADV 9R96 HIS C 23 UNP Q00059 EXPRESSION TAG SEQADV 9R96 HIS C 24 UNP Q00059 EXPRESSION TAG SEQADV 9R96 HIS C 25 UNP Q00059 EXPRESSION TAG SEQADV 9R96 ASP C 26 UNP Q00059 EXPRESSION TAG SEQADV 9R96 TYR C 27 UNP Q00059 EXPRESSION TAG SEQADV 9R96 ASP C 28 UNP Q00059 EXPRESSION TAG SEQADV 9R96 ILE C 29 UNP Q00059 EXPRESSION TAG SEQADV 9R96 PRO C 30 UNP Q00059 EXPRESSION TAG SEQADV 9R96 THR C 31 UNP Q00059 EXPRESSION TAG SEQADV 9R96 THR C 32 UNP Q00059 EXPRESSION TAG SEQADV 9R96 GLU C 33 UNP Q00059 EXPRESSION TAG SEQADV 9R96 ASN C 34 UNP Q00059 EXPRESSION TAG SEQADV 9R96 LEU C 35 UNP Q00059 EXPRESSION TAG SEQADV 9R96 TYR C 36 UNP Q00059 EXPRESSION TAG SEQADV 9R96 PHE C 37 UNP Q00059 EXPRESSION TAG SEQADV 9R96 GLN C 38 UNP Q00059 EXPRESSION TAG SEQADV 9R96 GLY C 39 UNP Q00059 EXPRESSION TAG SEQADV 9R96 ALA C 40 UNP Q00059 EXPRESSION TAG SEQADV 9R96 MET C 41 UNP Q00059 EXPRESSION TAG SEQADV 9R96 GLY C 42 UNP Q00059 EXPRESSION TAG SEQRES 1 A 1188 SER ALA SER PRO GLN GLU GLN ASP GLN ASP ARG ARG LYS SEQRES 2 A 1188 ASP TRP GLY HIS VAL GLU LEU LEU GLU VAL LEU GLN ALA SEQRES 3 A 1188 ARG VAL ARG GLN LEU GLN ALA GLU SER VAL SER GLU VAL SEQRES 4 A 1188 VAL VAL ASN ARG VAL ASP VAL ALA ARG LEU PRO GLU CYS SEQRES 5 A 1188 GLY SER GLY ASP GLY SER LEU GLN PRO PRO ARG LYS VAL SEQRES 6 A 1188 GLN MET GLY ALA LYS ASP ALA THR PRO VAL PRO CYS GLY SEQRES 7 A 1188 ARG TRP ALA LYS ILE LEU GLU LYS ASP LYS ARG THR GLN SEQRES 8 A 1188 GLN MET ARG MET GLN ARG LEU LYS ALA LYS LEU GLN MET SEQRES 9 A 1188 PRO PHE GLN SER GLY GLU PHE LYS ALA LEU THR ARG ARG SEQRES 10 A 1188 LEU GLN VAL GLU PRO ARG LEU LEU SER LYS GLN MET ALA SEQRES 11 A 1188 GLY CYS LEU GLU ASP CYS THR ARG GLN ALA PRO GLU SER SEQRES 12 A 1188 PRO TRP GLU GLU GLN LEU ALA ARG LEU LEU GLN GLU ALA SEQRES 13 A 1188 PRO GLY LYS LEU SER LEU ASP VAL GLU GLN ALA PRO SER SEQRES 14 A 1188 GLY GLN HIS SER GLN ALA GLN LEU SER GLY GLN GLN GLN SEQRES 15 A 1188 ARG LEU LEU ALA PHE PHE LYS CYS CYS LEU LEU THR ASP SEQRES 16 A 1188 GLN LEU PRO LEU ALA HIS HIS LEU LEU VAL VAL HIS HIS SEQRES 17 A 1188 GLY GLN ARG GLN LYS ARG LYS LEU LEU THR LEU ASP MET SEQRES 18 A 1188 TYR ASN ALA VAL MET LEU GLY TRP ALA ARG GLN GLY ALA SEQRES 19 A 1188 PHE LYS GLU LEU VAL TYR VAL LEU PHE MET VAL LYS ASP SEQRES 20 A 1188 ALA GLY LEU THR PRO ASP LEU LEU SER TYR ALA ALA ALA SEQRES 21 A 1188 LEU GLN CYS MET GLY ARG GLN ASP GLN ASP ALA GLY THR SEQRES 22 A 1188 ILE GLU ARG CYS LEU GLU GLN MET SER GLN GLU GLY LEU SEQRES 23 A 1188 LYS LEU GLN ALA LEU PHE THR ALA VAL LEU LEU SER GLU SEQRES 24 A 1188 GLU ASP ARG ALA THR VAL LEU LYS ALA VAL HIS LYS VAL SEQRES 25 A 1188 LYS PRO THR PHE SER LEU PRO PRO GLN LEU PRO PRO PRO SEQRES 26 A 1188 VAL ASN THR SER LYS LEU LEU ARG ASP VAL TYR ALA LYS SEQRES 27 A 1188 ASP GLY ARG VAL SER TYR PRO LYS LEU HIS LEU PRO LEU SEQRES 28 A 1188 LYS THR LEU GLN CYS LEU PHE GLU LYS GLN LEU HIS MET SEQRES 29 A 1188 GLU LEU ALA SER ARG VAL CYS VAL VAL SER VAL GLU LYS SEQRES 30 A 1188 PRO THR LEU PRO SER LYS GLU VAL LYS HIS ALA ARG LYS SEQRES 31 A 1188 THR LEU LYS THR LEU ARG ASP GLN TRP GLU LYS ALA LEU SEQRES 32 A 1188 CYS ARG ALA LEU ARG GLU THR LYS ASN ARG LEU GLU ARG SEQRES 33 A 1188 GLU VAL TYR GLU GLY ARG PHE SER LEU TYR PRO PHE LEU SEQRES 34 A 1188 CYS LEU LEU ASP GLU ARG GLU VAL VAL ARG MET LEU LEU SEQRES 35 A 1188 GLN VAL LEU GLN ALA LEU PRO ALA GLN GLY GLU SER PHE SEQRES 36 A 1188 THR THR LEU ALA ARG GLU LEU SER ALA ARG THR PHE SER SEQRES 37 A 1188 ARG HIS VAL VAL GLN ARG GLN ARG VAL SER GLY GLN VAL SEQRES 38 A 1188 GLN ALA LEU GLN ASN HIS TYR ARG LYS TYR LEU CYS LEU SEQRES 39 A 1188 LEU ALA SER ASP ALA GLU VAL PRO GLU PRO CYS LEU PRO SEQRES 40 A 1188 ARG GLN TYR TRP GLU GLU LEU GLY ALA PRO GLU ALA LEU SEQRES 41 A 1188 ARG GLU GLN PRO TRP PRO LEU PRO VAL GLN MET GLU LEU SEQRES 42 A 1188 GLY LYS LEU LEU ALA GLU MET LEU VAL GLN ALA THR GLN SEQRES 43 A 1188 MET PRO CYS SER LEU ASP LYS PRO HIS ARG SER SER ARG SEQRES 44 A 1188 LEU VAL PRO VAL LEU TYR HIS VAL TYR SER PHE ARG ASN SEQRES 45 A 1188 VAL GLN GLN ILE GLY ILE LEU LYS PRO HIS PRO ALA TYR SEQRES 46 A 1188 VAL GLN LEU LEU GLU LYS ALA ALA GLU PRO THR LEU THR SEQRES 47 A 1188 PHE GLU ALA VAL ASP VAL PRO MET LEU CYS PRO PRO LEU SEQRES 48 A 1188 PRO TRP THR SER PRO HIS SER GLY ALA PHE LEU LEU SER SEQRES 49 A 1188 PRO THR LYS LEU MET ARG THR VAL GLU GLY ALA THR GLN SEQRES 50 A 1188 HIS GLN GLU LEU LEU GLU THR CYS PRO PRO THR ALA LEU SEQRES 51 A 1188 HIS GLY ALA LEU ASP ALA LEU THR GLN LEU GLY ASN CYS SEQRES 52 A 1188 ALA TRP ARG VAL ASN GLY ARG VAL LEU ASP LEU VAL LEU SEQRES 53 A 1188 GLN LEU PHE GLN ALA LYS GLY CYS PRO GLN LEU GLY VAL SEQRES 54 A 1188 PRO ALA PRO PRO SER GLU ALA PRO GLN PRO PRO GLU ALA SEQRES 55 A 1188 HIS LEU PRO HIS SER ALA ALA PRO ALA ARG LYS ALA GLU SEQRES 56 A 1188 LEU ARG ARG GLU LEU ALA HIS CYS GLN LYS VAL ALA ARG SEQRES 57 A 1188 GLU MET HIS SER LEU ARG ALA GLU ALA LEU TYR ARG LEU SEQRES 58 A 1188 SER LEU ALA GLN HIS LEU ARG ASP ARG VAL PHE TRP LEU SEQRES 59 A 1188 PRO HIS ASN MET ASP PHE ARG GLY ARG THR TYR PRO CYS SEQRES 60 A 1188 PRO PRO HIS PHE ASN HIS LEU GLY SER ASP VAL ALA ARG SEQRES 61 A 1188 ALA LEU LEU GLU PHE ALA GLN GLY ARG PRO LEU GLY PRO SEQRES 62 A 1188 HIS GLY LEU ASP TRP LEU LYS ILE HIS LEU VAL ASN LEU SEQRES 63 A 1188 THR GLY LEU LYS LYS ARG GLU PRO LEU ARG LYS ARG LEU SEQRES 64 A 1188 ALA PHE ALA GLU GLU VAL MET ASP ASP ILE LEU ASP SER SEQRES 65 A 1188 ALA ASP GLN PRO LEU THR GLY ARG LYS TRP TRP MET GLY SEQRES 66 A 1188 ALA GLU GLU PRO TRP GLN THR LEU ALA CYS CYS MET GLU SEQRES 67 A 1188 VAL ALA ASN ALA VAL ARG ALA SER ASP PRO ALA ALA TYR SEQRES 68 A 1188 VAL SER HIS LEU PRO VAL HIS GLN ASP GLY SER CYS ASN SEQRES 69 A 1188 GLY LEU GLN HIS TYR ALA ALA LEU GLY ARG ASP SER VAL SEQRES 70 A 1188 GLY ALA ALA SER VAL ASN LEU GLU PRO SER ASP VAL PRO SEQRES 71 A 1188 GLN ASP VAL TYR SER GLY VAL ALA ALA GLN VAL GLU VAL SEQRES 72 A 1188 PHE ARG ARG GLN ASP ALA GLN ARG GLY MET ARG VAL ALA SEQRES 73 A 1188 GLN VAL LEU GLU GLY PHE ILE THR ARG LYS VAL VAL LYS SEQRES 74 A 1188 GLN THR VAL MET THR VAL VAL TYR GLY VAL THR ARG TYR SEQRES 75 A 1188 GLY GLY ARG LEU GLN ILE GLU LYS ARG LEU ARG GLU LEU SEQRES 76 A 1188 SER ASP PHE PRO GLN GLU PHE VAL TRP GLU ALA SER HIS SEQRES 77 A 1188 TYR LEU VAL ARG GLN VAL PHE LYS SER LEU GLN GLU MET SEQRES 78 A 1188 PHE SER GLY THR ARG ALA ILE GLN HIS TRP LEU THR GLU SEQRES 79 A 1188 SER ALA ARG LEU ILE SER HIS MET GLY SER VAL VAL GLU SEQRES 80 A 1188 TRP VAL THR PRO LEU GLY VAL PRO VAL ILE GLN PRO TYR SEQRES 81 A 1188 ARG LEU ASP SER LYS VAL LYS GLN ILE GLY GLY GLY ILE SEQRES 82 A 1188 GLN SER ILE THR TYR THR HIS ASN GLY ASP ILE SER ARG SEQRES 83 A 1188 LYS PRO ASN THR ARG LYS GLN LYS ASN GLY PHE PRO PRO SEQRES 84 A 1188 ASN PHE ILE HIS SER LEU ASP SER SER HIS MET MET LEU SEQRES 85 A 1188 THR ALA LEU HIS CYS TYR ARG LYS GLY LEU THR PHE VAL SEQRES 86 A 1188 SER VAL HIS ASP CYS TYR TRP THR HIS ALA ALA ASP VAL SEQRES 87 A 1188 SER VAL MET ASN GLN VAL CYS ARG GLU GLN PHE VAL ARG SEQRES 88 A 1188 LEU HIS SER GLU PRO ILE LEU GLN ASP LEU SER ARG PHE SEQRES 89 A 1188 LEU VAL LYS ARG PHE CYS SER GLU PRO GLN LYS ILE LEU SEQRES 90 A 1188 GLU ALA SER GLN LEU LYS GLU THR LEU GLN ALA VAL PRO SEQRES 91 A 1188 LYS PRO GLY ALA PHE ASP LEU GLU GLN VAL LYS ARG SER SEQRES 92 A 1188 THR TYR PHE PHE SER SEQRES 1 N 56 DA DT DG DT DG DT DT DA DG DT DT DG DG SEQRES 2 N 56 DG DG DG DG DT DG DA DC DT DG DT DT DA SEQRES 3 N 56 DA DA DA DG DT DG DC DA DT DA DC DC DG SEQRES 4 N 56 DA DA DC DA DA DA DG DA DT DA DA DA DA SEQRES 5 N 56 DT DT DT DG SEQRES 1 T 56 DC DA DA DA DT DT DT DT DA DT DC DT DC SEQRES 2 T 56 DC DA DG DG DC DG DG DT DA DT DG DC DA SEQRES 3 T 56 DC DT DT DT DT DA DA DC DA DG DT DC DA SEQRES 4 T 56 DC DC DC DC DC DC DA DA DC DT DA DA DC SEQRES 5 T 56 DA DC DA DT SEQRES 1 B 337 PRO PRO ARG LYS ALA SER LYS ALA SER LEU ASP PHE LYS SEQRES 2 B 337 ARG TYR VAL THR ASP ARG ARG LEU ALA GLU THR LEU ALA SEQRES 3 B 337 GLN ILE TYR LEU GLY LYS PRO SER ARG PRO PRO HIS LEU SEQRES 4 B 337 LEU LEU GLU CYS ASN PRO GLY PRO GLY ILE LEU THR GLN SEQRES 5 B 337 ALA LEU LEU GLU ALA GLY ALA LYS VAL VAL ALA LEU GLU SEQRES 6 B 337 SER ASP LYS THR PHE ILE PRO HIS LEU GLU SER LEU GLY SEQRES 7 B 337 LYS ASN LEU ASP GLY LYS LEU ARG VAL ILE HIS CYS ASP SEQRES 8 B 337 PHE PHE LYS LEU ASP PRO ARG SER GLY GLY VAL ILE LYS SEQRES 9 B 337 PRO PRO ALA MET SER SER ARG GLY LEU PHE LYS ASN LEU SEQRES 10 B 337 GLY ILE GLU ALA VAL PRO TRP THR ALA ASP ILE PRO LEU SEQRES 11 B 337 LYS VAL VAL GLY MET PHE PRO SER ARG GLY GLU LYS ARG SEQRES 12 B 337 ALA LEU TRP LYS LEU ALA TYR ASP LEU TYR SER CYS THR SEQRES 13 B 337 SER ILE TYR LYS PHE GLY ARG ILE GLU VAL ASN MET PHE SEQRES 14 B 337 ILE GLY GLU LYS GLU PHE GLN LYS LEU MET ALA ASP PRO SEQRES 15 B 337 GLY ASN PRO ASP LEU TYR HIS VAL LEU SER VAL ILE TRP SEQRES 16 B 337 GLN LEU ALA CYS GLU ILE LYS VAL LEU HIS MET GLU PRO SEQRES 17 B 337 TRP SER SER PHE ASP ILE TYR THR ARG LYS GLY PRO LEU SEQRES 18 B 337 GLU ASN PRO LYS ARG ARG GLU LEU LEU ASP GLN LEU GLN SEQRES 19 B 337 GLN LYS LEU TYR LEU ILE GLN MET ILE PRO ARG GLN ASN SEQRES 20 B 337 LEU PHE THR LYS ASN LEU THR PRO MET ASN TYR ASN ILE SEQRES 21 B 337 PHE PHE HIS LEU LEU LYS HIS CYS PHE GLY ARG ARG SER SEQRES 22 B 337 ALA THR VAL ILE ASP HIS LEU ARG SER LEU THR PRO LEU SEQRES 23 B 337 ASP ALA ARG ASP ILE LEU MET GLN ILE GLY LYS GLN GLU SEQRES 24 B 337 ASP GLU LYS VAL VAL ASN MET HIS PRO GLN ASP PHE LYS SEQRES 25 B 337 THR LEU PHE GLU THR ILE GLU ARG SER LYS ASP CYS ALA SEQRES 26 B 337 TYR LYS TRP LEU TYR ASP GLU THR LEU GLU ASP ARG SEQRES 1 R 3 GTP G 3DA SEQRES 1 C 230 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 C 230 ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA MET SEQRES 3 C 230 GLY SER SER VAL LEU ALA SER CYS PRO LYS LYS PRO VAL SEQRES 4 C 230 SER SER TYR LEU ARG PHE SER LYS GLU GLN LEU PRO ILE SEQRES 5 C 230 PHE LYS ALA GLN ASN PRO ASP ALA LYS THR THR GLU LEU SEQRES 6 C 230 ILE ARG ARG ILE ALA GLN ARG TRP ARG GLU LEU PRO ASP SEQRES 7 C 230 SER LYS LYS LYS ILE TYR GLN ASP ALA TYR ARG ALA GLU SEQRES 8 C 230 TRP GLN VAL TYR LYS GLU GLU ILE SER ARG PHE LYS GLU SEQRES 9 C 230 GLN LEU THR PRO SER GLN ILE MET SER LEU GLU LYS GLU SEQRES 10 C 230 ILE MET ASP LYS HIS LEU LYS ARG LYS ALA MET THR LYS SEQRES 11 C 230 LYS LYS GLU LEU THR LEU LEU GLY LYS PRO LYS ARG PRO SEQRES 12 C 230 ARG SER ALA TYR ASN VAL TYR VAL ALA GLU ARG PHE GLN SEQRES 13 C 230 GLU ALA LYS GLY ASP SER PRO GLN GLU LYS LEU LYS THR SEQRES 14 C 230 VAL LYS GLU ASN TRP LYS ASN LEU SER ASP SER GLU LYS SEQRES 15 C 230 GLU LEU TYR ILE GLN HIS ALA LYS GLU ASP GLU THR ARG SEQRES 16 C 230 TYR HIS ASN GLU MET LYS SER TRP GLU GLU GLN MET ILE SEQRES 17 C 230 GLU VAL GLY ARG LYS ASP LEU LEU ARG ARG THR ILE LYS SEQRES 18 C 230 LYS GLN ARG LYS TYR GLY ALA GLU GLU HET GTP R 101 32 HET 3DA R 103 21 HET GTP A1301 32 HET MG A1302 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM 3DA 3'-DEOXYADENOSINE-5'-MONOPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 5 GTP 2(C10 H16 N5 O14 P3) FORMUL 5 3DA C10 H14 N5 O6 P FORMUL 8 MG MG 2+ HELIX 1 AA1 TRP A 122 MET A 146 1 25 HELIX 2 AA2 SER A 168 ALA A 182 1 15 HELIX 3 AA3 PRO A 186 ALA A 198 1 13 HELIX 4 AA4 SER A 220 ASP A 237 1 18 HELIX 5 AA5 GLN A 238 GLN A 252 1 15 HELIX 6 AA6 GLN A 252 LYS A 257 1 6 HELIX 7 AA7 THR A 260 GLN A 274 1 15 HELIX 8 AA8 PHE A 277 ALA A 290 1 14 HELIX 9 AA9 ASP A 295 ASP A 310 1 16 HELIX 10 AB1 ASP A 312 GLY A 327 1 16 HELIX 11 AB2 LYS A 329 PHE A 334 1 6 HELIX 12 AB3 SER A 340 LYS A 355 1 16 HELIX 13 AB4 PRO A 392 SER A 410 1 19 HELIX 14 AB5 SER A 424 GLU A 462 1 39 HELIX 15 AB6 LEU A 467 LEU A 473 1 7 HELIX 16 AB7 ASP A 475 ALA A 489 1 15 HELIX 17 AB8 PHE A 497 GLY A 521 1 25 HELIX 18 AB9 GLY A 521 LEU A 534 1 14 HELIX 19 AC1 LEU A 548 LEU A 556 1 9 HELIX 20 AC2 PRO A 568 THR A 587 1 20 HELIX 21 AC3 HIS A 624 ALA A 635 1 12 HELIX 22 AC4 VAL A 644 VAL A 646 5 3 HELIX 23 AC5 THR A 678 THR A 686 1 9 HELIX 24 AC6 PRO A 688 ALA A 691 5 4 HELIX 25 AC7 LEU A 692 ASN A 704 1 13 HELIX 26 AC8 ASN A 710 ALA A 723 1 14 HELIX 27 AC9 ALA A 756 LEU A 789 1 34 HELIX 28 AD1 SER A 818 LEU A 824 1 7 HELIX 29 AD2 GLY A 837 GLY A 850 1 14 HELIX 30 AD3 PRO A 856 VAL A 867 1 12 HELIX 31 AD4 VAL A 867 GLN A 877 1 11 HELIX 32 AD5 LYS A 883 ALA A 888 5 6 HELIX 33 AD6 GLU A 890 ALA A 907 1 18 HELIX 34 AD7 ASP A 909 ALA A 912 5 4 HELIX 35 AD8 CYS A 925 ARG A 936 1 12 HELIX 36 AD9 ASP A 937 VAL A 944 1 8 HELIX 37 AE1 ASP A 954 ARG A 973 1 20 HELIX 38 AE2 MET A 975 LEU A 981 1 7 HELIX 39 AE3 VAL A 990 VAL A 997 1 8 HELIX 40 AE4 THR A 1002 GLU A 1016 1 15 HELIX 41 AE5 PHE A 1024 LEU A 1040 1 17 HELIX 42 AE6 SER A 1045 MET A 1064 1 20 HELIX 43 AE7 ASN A 1111 ARG A 1141 1 31 HELIX 44 AE8 ASP A 1159 SER A 1176 1 18 HELIX 45 AE9 PRO A 1178 CYS A 1192 1 15 HELIX 46 AF1 LYS A 1197 GLN A 1209 1 13 HELIX 47 AF2 ASP A 1218 SER A 1225 5 8 HELIX 48 AF3 ASP B 77 LEU B 89 1 13 HELIX 49 AF4 GLY B 107 ALA B 116 1 10 HELIX 50 AF5 THR B 128 GLY B 137 1 10 HELIX 51 AF6 ASP B 150 LEU B 154 5 5 HELIX 52 AF7 SER B 168 LEU B 176 1 9 HELIX 53 AF8 GLY B 199 SER B 213 1 15 HELIX 54 AF9 THR B 215 GLY B 221 5 7 HELIX 55 AG1 GLY B 230 MET B 238 1 9 HELIX 56 AG2 HIS B 248 ALA B 257 1 10 HELIX 57 AG3 ASN B 282 LEU B 292 1 11 HELIX 58 AG4 ASN B 316 PHE B 328 1 13 HELIX 59 AG5 THR B 334 THR B 343 1 10 HELIX 60 AG6 ASP B 346 GLY B 355 1 10 HELIX 61 AG7 LYS B 361 MET B 365 5 5 HELIX 62 AG8 HIS B 366 SER B 380 1 15 HELIX 63 AG9 ASP B 390 GLU B 394 5 5 HELIX 64 AH1 SER C 44 CYS C 49 1 6 HELIX 65 AH2 SER C 55 ASN C 72 1 18 HELIX 66 AH3 LYS C 76 LEU C 91 1 16 HELIX 67 AH4 PRO C 92 LEU C 121 1 30 HELIX 68 AH5 THR C 122 LEU C 152 1 31 HELIX 69 AH6 SER C 160 PHE C 170 1 11 HELIX 70 AH7 GLU C 180 LYS C 190 1 11 HELIX 71 AH8 LEU C 199 VAL C 225 1 27 SHEET 1 AA1 2 ARG A 411 VAL A 415 0 SHEET 2 AA1 2 THR A 638 GLU A 642 -1 O LEU A 639 N VAL A 414 SHEET 1 AA2 3 GLU A 495 SER A 496 0 SHEET 2 AA2 3 GLN A 616 PRO A 623 -1 O LEU A 621 N GLU A 495 SHEET 3 AA2 3 LEU A 606 ARG A 613 -1 N SER A 611 O ILE A 618 SHEET 1 AA3 2 GLN A 588 PRO A 590 0 SHEET 2 AA3 2 LEU A 602 PRO A 604 -1 O VAL A 603 N MET A 589 SHEET 1 AA4 2 TRP A 707 VAL A 709 0 SHEET 2 AA4 2 LEU A 825 PHE A 827 -1 O GLU A 826 N ARG A 708 SHEET 1 AA5 2 HIS A 798 MET A 800 0 SHEET 2 AA5 2 THR A 806 PRO A 808 -1 O TYR A 807 N ASN A 799 SHEET 1 AA6 2 ARG A 831 PRO A 832 0 SHEET 2 AA6 2 VAL A 914 SER A 915 -1 O SER A 915 N ARG A 831 SHEET 1 AA7 3 VAL A 919 ASP A 922 0 SHEET 2 AA7 3 CYS A1152 THR A1155 -1 O THR A1155 N VAL A 919 SHEET 3 AA7 3 VAL A1147 VAL A1149 -1 N VAL A1149 O CYS A1152 SHEET 1 AA8 2 GLU A1069 VAL A1071 0 SHEET 2 AA8 2 PRO A1077 ILE A1079 -1 O VAL A1078 N TRP A1070 SHEET 1 AA9 2 LYS A1089 ILE A1091 0 SHEET 2 AA9 2 ILE A1098 TYR A1100 -1 O TYR A1100 N LYS A1089 SHEET 1 AB1 7 LEU B 144 ILE B 147 0 SHEET 2 AB1 7 LYS B 119 LEU B 123 1 N ALA B 122 O ILE B 147 SHEET 3 AB1 7 LEU B 98 CYS B 102 1 N LEU B 99 O LYS B 119 SHEET 4 AB1 7 LYS B 190 MET B 194 1 O VAL B 192 N LEU B 100 SHEET 5 AB1 7 GLU B 224 ILE B 229 1 O ASN B 226 N VAL B 191 SHEET 6 AB1 7 LYS B 295 PRO B 303 -1 O MET B 301 N VAL B 225 SHEET 7 AB1 7 CYS B 258 PRO B 267 -1 N LEU B 263 O LEU B 298 LINK O3' GTP R 101 P G R 102 1555 1555 1.57 LINK O3' G R 102 P 3DA R 103 1555 1555 1.63 LINK OD1 ASP A 922 MG MG A1302 1555 1555 2.10 LINK O GLY A 923 MG MG A1302 1555 1555 2.28 LINK OD2 ASP A1151 MG MG A1302 1555 1555 2.00 LINK O3G GTP A1301 MG MG A1302 1555 1555 2.59 LINK O2B GTP A1301 MG MG A1302 1555 1555 2.48 LINK O2A GTP A1301 MG MG A1302 1555 1555 2.76 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 8484 SER A1230 TER 9524 DT N 52 TER 10537 DA T 49 TER 13128 ARG B 396 HETATM13129 PG GTP R 101 85.091 75.816 105.012 1.00113.61 P HETATM13130 O1G GTP R 101 85.060 77.200 105.605 1.00100.42 O HETATM13131 O2G GTP R 101 85.003 75.827 103.507 1.00113.11 O HETATM13132 O3G GTP R 101 84.079 74.896 105.643 1.00107.89 O HETATM13133 O3B GTP R 101 86.540 75.192 105.369 1.00108.18 O HETATM13134 PB GTP R 101 88.052 75.576 105.006 1.00104.39 P HETATM13135 O1B GTP R 101 88.148 75.841 103.540 1.00102.19 O HETATM13136 O2B GTP R 101 88.955 74.567 105.629 1.00 97.66 O HETATM13137 O3A GTP R 101 88.236 76.954 105.794 1.00 91.55 O HETATM13138 PA GTP R 101 88.306 77.301 107.354 1.00 90.31 P HETATM13139 O1A GTP R 101 89.504 76.635 107.938 1.00 85.78 O HETATM13140 O2A GTP R 101 86.977 77.028 107.973 1.00 90.83 O HETATM13141 O5' GTP R 101 88.553 78.881 107.292 1.00 81.14 O HETATM13142 C5' GTP R 101 89.899 79.364 107.066 1.00 74.82 C HETATM13143 C4' GTP R 101 89.840 80.788 106.571 1.00 66.53 C HETATM13144 O4' GTP R 101 89.554 80.789 105.150 1.00 65.70 O HETATM13145 C3' GTP R 101 88.750 81.672 107.183 1.00 63.37 C HETATM13146 O3' GTP R 101 89.185 82.258 108.402 1.00 63.93 O HETATM13147 C2' GTP R 101 88.562 82.716 106.082 1.00 59.65 C HETATM13148 O2' GTP R 101 89.591 83.679 106.103 1.00 58.98 O HETATM13149 C1' GTP R 101 88.686 81.852 104.830 1.00 63.09 C HETATM13150 N9 GTP R 101 87.427 81.297 104.349 1.00 62.30 N HETATM13151 C8 GTP R 101 87.090 79.970 104.280 1.00 65.31 C HETATM13152 N7 GTP R 101 85.889 79.765 103.800 1.00 59.31 N HETATM13153 C5 GTP R 101 85.406 81.039 103.536 1.00 54.70 C HETATM13154 C6 GTP R 101 84.159 81.444 103.005 1.00 55.08 C HETATM13155 O6 GTP R 101 83.209 80.733 102.651 1.00 55.66 O HETATM13156 N1 GTP R 101 84.077 82.831 102.900 1.00 54.62 N HETATM13157 C2 GTP R 101 85.065 83.712 103.258 1.00 54.00 C HETATM13158 N2 GTP R 101 84.803 85.013 103.080 1.00 54.05 N HETATM13159 N3 GTP R 101 86.241 83.336 103.756 1.00 55.36 N HETATM13160 C4 GTP R 101 86.342 81.991 103.868 1.00 56.57 C HETATM13184 P 3DA R 103 84.377 86.009 111.801 1.00 42.06 P HETATM13185 O1P 3DA R 103 84.833 86.890 112.897 1.00 41.65 O HETATM13186 O2P 3DA R 103 84.532 84.543 111.923 1.00 36.02 O HETATM13187 O5' 3DA R 103 82.847 86.334 111.509 1.00 44.96 O HETATM13188 C5' 3DA R 103 82.423 87.668 111.179 1.00 40.61 C HETATM13189 C4' 3DA R 103 80.961 87.668 110.806 1.00 45.14 C HETATM13190 O4' 3DA R 103 80.765 86.840 109.643 1.00 46.43 O HETATM13191 C1' 3DA R 103 79.424 86.411 109.610 1.00 44.20 C HETATM13192 N9 3DA R 103 79.392 85.031 109.135 1.00 45.03 N HETATM13193 C4 3DA R 103 78.317 84.397 108.559 1.00 48.30 C HETATM13194 N3 3DA R 103 77.104 84.916 108.306 1.00 46.68 N HETATM13195 C2 3DA R 103 76.316 84.009 107.735 1.00 49.74 C HETATM13196 N1 3DA R 103 76.582 82.738 107.415 1.00 50.58 N HETATM13197 C6 3DA R 103 77.811 82.247 107.684 1.00 54.65 C HETATM13198 N6 3DA R 103 78.077 80.979 107.362 1.00 56.14 N HETATM13199 C5 3DA R 103 78.740 83.109 108.288 1.00 53.77 C HETATM13200 N7 3DA R 103 80.057 82.931 108.688 1.00 51.32 N HETATM13201 C8 3DA R 103 80.395 84.096 109.184 1.00 47.95 C HETATM13202 C2' 3DA R 103 78.836 86.568 111.016 1.00 45.67 C HETATM13203 O2' 3DA R 103 77.766 87.486 110.997 1.00 51.69 O HETATM13204 C3' 3DA R 103 80.025 87.061 111.843 1.00 46.55 C TER 13205 3DA R 103 TER 14579 LEU C 231 HETATM14580 PG GTP A1301 78.397 84.304 119.682 1.00 72.17 P HETATM14581 O1G GTP A1301 79.552 83.615 119.001 1.00 70.12 O HETATM14582 O2G GTP A1301 78.370 83.915 121.138 1.00 73.78 O HETATM14583 O3G GTP A1301 78.551 85.798 119.551 1.00 60.45 O HETATM14584 O3B GTP A1301 77.039 83.833 118.964 1.00 72.99 O HETATM14585 PB GTP A1301 76.682 84.403 117.505 1.00 72.70 P HETATM14586 O1B GTP A1301 75.396 83.789 117.014 1.00 65.18 O HETATM14587 O2B GTP A1301 76.609 85.910 117.527 1.00 64.87 O HETATM14588 O3A GTP A1301 77.906 83.928 116.583 1.00 73.76 O HETATM14589 PA GTP A1301 78.356 84.805 115.313 1.00 76.37 P HETATM14590 O1A GTP A1301 79.379 84.055 114.498 1.00 69.06 O HETATM14591 O2A GTP A1301 78.917 86.122 115.784 1.00 76.20 O HETATM14592 O5' GTP A1301 77.032 85.053 114.431 1.00 69.71 O HETATM14593 C5' GTP A1301 76.322 86.271 114.494 1.00 66.07 C HETATM14594 C4' GTP A1301 75.053 86.161 113.658 1.00 62.79 C HETATM14595 O4' GTP A1301 75.393 85.743 112.355 1.00 64.27 O HETATM14596 C3' GTP A1301 74.081 85.128 114.186 1.00 61.27 C HETATM14597 O3' GTP A1301 73.099 85.735 114.988 1.00 66.60 O HETATM14598 C2' GTP A1301 73.450 84.552 112.940 1.00 59.36 C HETATM14599 O2' GTP A1301 72.207 85.169 112.719 1.00 58.30 O HETATM14600 C1' GTP A1301 74.402 84.898 111.811 1.00 64.58 C HETATM14601 N9 GTP A1301 75.033 83.658 111.328 1.00 67.38 N HETATM14602 C8 GTP A1301 76.333 83.285 111.535 1.00 68.91 C HETATM14603 N7 GTP A1301 76.543 82.092 110.938 1.00 63.27 N HETATM14604 C5 GTP A1301 75.396 81.702 110.343 1.00 65.95 C HETATM14605 C6 GTP A1301 75.068 80.575 109.605 1.00 71.58 C HETATM14606 O6 GTP A1301 75.910 79.706 109.392 1.00 74.55 O HETATM14607 N1 GTP A1301 73.791 80.436 109.108 1.00 73.31 N HETATM14608 C2 GTP A1301 72.851 81.414 109.349 1.00 69.24 C HETATM14609 N2 GTP A1301 71.622 81.280 108.870 1.00 66.06 N HETATM14610 N3 GTP A1301 73.185 82.532 110.085 1.00 66.93 N HETATM14611 C4 GTP A1301 74.439 82.677 110.577 1.00 66.39 C HETATM14612 MG MG A1302 78.219 87.761 117.897 1.00 51.89 MG CONECT 603814612 CONECT 604314612 CONECT 783414612 CONECT1312913130131311313213133 CONECT1313013129 CONECT1313113129 CONECT1313213129 CONECT131331312913134 CONECT1313413133131351313613137 CONECT1313513134 CONECT1313613134 CONECT131371313413138 CONECT1313813137131391314013141 CONECT1313913138 CONECT1314013138 CONECT131411313813142 CONECT131421314113143 CONECT13143131421314413145 CONECT131441314313149 CONECT13145131431314613147 CONECT131461314513161 CONECT13147131451314813149 CONECT1314813147 CONECT13149131441314713150 CONECT13150131491315113160 CONECT131511315013152 CONECT131521315113153 CONECT13153131521315413160 CONECT13154131531315513156 CONECT1315513154 CONECT131561315413157 CONECT13157131561315813159 CONECT1315813157 CONECT131591315713160 CONECT13160131501315313159 CONECT1316113146 CONECT1316913184 CONECT1318413169131851318613187 CONECT1318513184 CONECT1318613184 CONECT131871318413188 CONECT131881318713189 CONECT13189131881319013204 CONECT131901318913191 CONECT13191131901319213202 CONECT13192131911319313201 CONECT13193131921319413199 CONECT131941319313195 CONECT131951319413196 CONECT131961319513197 CONECT13197131961319813199 CONECT1319813197 CONECT13199131931319713200 CONECT132001319913201 CONECT132011319213200 CONECT13202131911320313204 CONECT1320313202 CONECT132041318913202 CONECT1458014581145821458314584 CONECT1458114580 CONECT1458214580 CONECT145831458014612 CONECT145841458014585 CONECT1458514584145861458714588 CONECT1458614585 CONECT145871458514612 CONECT145881458514589 CONECT1458914588145901459114592 CONECT1459014589 CONECT145911458914612 CONECT145921458914593 CONECT145931459214594 CONECT14594145931459514596 CONECT145951459414600 CONECT14596145941459714598 CONECT1459714596 CONECT14598145961459914600 CONECT1459914598 CONECT14600145951459814601 CONECT14601146001460214611 CONECT146021460114603 CONECT146031460214604 CONECT14604146031460514611 CONECT14605146041460614607 CONECT1460614605 CONECT146071460514608 CONECT14608146071460914610 CONECT1460914608 CONECT146101460814611 CONECT14611146011460414610 CONECT14612 6038 6043 783414583 CONECT146121458714591 MASTER 502 0 4 71 27 0 0 614595 6 92 147 END