data_9RBD # _entry.id 9RBD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.406 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9RBD pdb_00009rbd 10.2210/pdb9rbd/pdb WWPDB D_1292148024 ? ? EMDB EMD-53891 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-08-27 ? 2 'EM metadata' 1 0 2025-08-27 ? 3 'Half map' 1 0 2025-08-27 1 4 'Half map' 1 0 2025-08-27 2 5 Image 1 0 2025-08-27 ? 6 Mask 1 0 2025-08-27 1 7 'Primary map' 1 0 2025-08-27 ? 8 'Structure model' 1 1 2025-11-12 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Half map' repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 Image repository 'Initial release' ? ? 6 6 Mask repository 'Initial release' ? ? 7 7 'Primary map' repository 'Initial release' ? ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 8 'Structure model' 'Data collection' 2 8 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 8 'Structure model' citation 2 8 'Structure model' citation_author 3 8 'Structure model' em_admin # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 8 'Structure model' '_citation.country' 2 8 'Structure model' '_citation.journal_abbrev' 3 8 'Structure model' '_citation.journal_id_CSD' 4 8 'Structure model' '_citation.journal_id_ISSN' 5 8 'Structure model' '_citation.journal_volume' 6 8 'Structure model' '_citation.page_first' 7 8 'Structure model' '_citation.page_last' 8 8 'Structure model' '_citation.pdbx_database_id_DOI' 9 8 'Structure model' '_citation.pdbx_database_id_PubMed' 10 8 'Structure model' '_citation.title' 11 8 'Structure model' '_citation.year' 12 8 'Structure model' '_citation_author.identifier_ORCID' 13 8 'Structure model' '_citation_author.name' 14 8 'Structure model' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9RBD _pdbx_database_status.recvd_initial_deposition_date 2025-05-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of ANP amyloids from left atrial appendage of atrial fibrillation patient - polymorph A' _pdbx_database_related.db_id EMD-53891 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 3 _pdbx_contact_author.email stefano.ricagno@unimi.it _pdbx_contact_author.name_first Stefano _pdbx_contact_author.name_last Ricagno _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-6678-5873 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Broggini, L.' 1 0000-0001-9472-6854 'Chaves-Sanjuan, A.' 2 0000-0003-3287-9024 'Ricagno, S.' 3 0000-0001-6678-5873 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 16 _citation.language ? _citation.page_first 9556 _citation.page_last 9556 _citation.title 'Structural characterization of atrial natriuretic peptide amyloid fibrils from patients with atrial fibrillation.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-025-64618-1 _citation.pdbx_database_id_PubMed 41162370 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Broggini, L.' 1 ? primary 'Piccoli, M.' 2 ? primary 'Chaves-Sanjuan, A.' 3 0000-0003-3287-9024 primary 'Bonnet, D.M.V.' 4 ? primary 'Cirillo, F.' 5 0000-0002-0196-5977 primary 'Visentin, C.' 6 0000-0003-2705-1417 primary 'Sonzini, F.' 7 ? primary 'Signorelli, P.' 8 ? primary 'Lavota, I.' 9 ? primary 'Milazzo, M.' 10 0009-0000-7726-8580 primary 'Nonnis, S.' 11 0000-0002-3453-7282 primary 'Menicanti, L.' 12 ? primary 'Ciconte, G.' 13 ? primary 'Pappone, C.' 14 0000-0002-0901-6135 primary 'Anastasia, L.' 15 0000-0002-0712-2161 primary 'Ricagno, S.' 16 0000-0001-6678-5873 # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'Natriuretic peptides A' _entity.formula_weight 2572.882 _entity.pdbx_number_of_molecules 20 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Atrial natriuretic factor prohormone,proANF,Atrial natriuretic peptide prohormone,preproANP,proANP,Atriopeptigen,Cardiodilatin,CDD,preproCDD-ANF ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code SSCFGGRMDRIGAQSGLGCNSFRY _entity_poly.pdbx_seq_one_letter_code_can SSCFGGRMDRIGAQSGLGCNSFRY _entity_poly.pdbx_strand_id J,L,g,i,A,B,C,D,E,F,G,H,I,K,M,N,O,P,Q,R _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 SER n 1 3 CYS n 1 4 PHE n 1 5 GLY n 1 6 GLY n 1 7 ARG n 1 8 MET n 1 9 ASP n 1 10 ARG n 1 11 ILE n 1 12 GLY n 1 13 ALA n 1 14 GLN n 1 15 SER n 1 16 GLY n 1 17 LEU n 1 18 GLY n 1 19 CYS n 1 20 ASN n 1 21 SER n 1 22 PHE n 1 23 ARG n 1 24 TYR n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 24 _entity_src_nat.common_name human _entity_src_nat.pdbx_organism_scientific 'Homo sapiens' _entity_src_nat.pdbx_ncbi_taxonomy_id 9606 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 103 103 SER SER J . n A 1 2 SER 2 104 104 SER SER J . n A 1 3 CYS 3 105 105 CYS CYS J . n A 1 4 PHE 4 106 106 PHE PHE J . n A 1 5 GLY 5 107 107 GLY GLY J . n A 1 6 GLY 6 108 108 GLY GLY J . n A 1 7 ARG 7 109 109 ARG ARG J . n A 1 8 MET 8 110 110 MET MET J . n A 1 9 ASP 9 111 111 ASP ASP J . n A 1 10 ARG 10 112 112 ARG ARG J . n A 1 11 ILE 11 113 113 ILE ILE J . n A 1 12 GLY 12 114 114 GLY GLY J . n A 1 13 ALA 13 115 115 ALA ALA J . n A 1 14 GLN 14 116 116 GLN GLN J . n A 1 15 SER 15 117 117 SER SER J . n A 1 16 GLY 16 118 118 GLY GLY J . n A 1 17 LEU 17 119 119 LEU LEU J . n A 1 18 GLY 18 120 120 GLY GLY J . n A 1 19 CYS 19 121 121 CYS CYS J . n A 1 20 ASN 20 122 122 ASN ASN J . n A 1 21 SER 21 123 123 SER SER J . n A 1 22 PHE 22 124 124 PHE PHE J . n A 1 23 ARG 23 125 125 ARG ARG J . n A 1 24 TYR 24 126 126 TYR TYR J . n B 1 1 SER 1 103 103 SER SER L . n B 1 2 SER 2 104 104 SER SER L . n B 1 3 CYS 3 105 105 CYS CYS L . n B 1 4 PHE 4 106 106 PHE PHE L . n B 1 5 GLY 5 107 107 GLY GLY L . n B 1 6 GLY 6 108 108 GLY GLY L . n B 1 7 ARG 7 109 109 ARG ARG L . n B 1 8 MET 8 110 110 MET MET L . n B 1 9 ASP 9 111 111 ASP ASP L . n B 1 10 ARG 10 112 112 ARG ARG L . n B 1 11 ILE 11 113 113 ILE ILE L . n B 1 12 GLY 12 114 114 GLY GLY L . n B 1 13 ALA 13 115 115 ALA ALA L . n B 1 14 GLN 14 116 116 GLN GLN L . n B 1 15 SER 15 117 117 SER SER L . n B 1 16 GLY 16 118 118 GLY GLY L . n B 1 17 LEU 17 119 119 LEU LEU L . n B 1 18 GLY 18 120 120 GLY GLY L . n B 1 19 CYS 19 121 121 CYS CYS L . n B 1 20 ASN 20 122 122 ASN ASN L . n B 1 21 SER 21 123 123 SER SER L . n B 1 22 PHE 22 124 124 PHE PHE L . n B 1 23 ARG 23 125 125 ARG ARG L . n B 1 24 TYR 24 126 126 TYR TYR L . n C 1 1 SER 1 103 103 SER SER g . n C 1 2 SER 2 104 104 SER SER g . n C 1 3 CYS 3 105 105 CYS CYS g . n C 1 4 PHE 4 106 106 PHE PHE g . n C 1 5 GLY 5 107 107 GLY GLY g . n C 1 6 GLY 6 108 108 GLY GLY g . n C 1 7 ARG 7 109 109 ARG ARG g . n C 1 8 MET 8 110 110 MET MET g . n C 1 9 ASP 9 111 111 ASP ASP g . n C 1 10 ARG 10 112 112 ARG ARG g . n C 1 11 ILE 11 113 113 ILE ILE g . n C 1 12 GLY 12 114 114 GLY GLY g . n C 1 13 ALA 13 115 115 ALA ALA g . n C 1 14 GLN 14 116 116 GLN GLN g . n C 1 15 SER 15 117 117 SER SER g . n C 1 16 GLY 16 118 118 GLY GLY g . n C 1 17 LEU 17 119 119 LEU LEU g . n C 1 18 GLY 18 120 120 GLY GLY g . n C 1 19 CYS 19 121 121 CYS CYS g . n C 1 20 ASN 20 122 122 ASN ASN g . n C 1 21 SER 21 123 123 SER SER g . n C 1 22 PHE 22 124 124 PHE PHE g . n C 1 23 ARG 23 125 125 ARG ARG g . n C 1 24 TYR 24 126 126 TYR TYR g . n D 1 1 SER 1 103 103 SER SER i . n D 1 2 SER 2 104 104 SER SER i . n D 1 3 CYS 3 105 105 CYS CYS i . n D 1 4 PHE 4 106 106 PHE PHE i . n D 1 5 GLY 5 107 107 GLY GLY i . n D 1 6 GLY 6 108 108 GLY GLY i . n D 1 7 ARG 7 109 109 ARG ARG i . n D 1 8 MET 8 110 110 MET MET i . n D 1 9 ASP 9 111 111 ASP ASP i . n D 1 10 ARG 10 112 112 ARG ARG i . n D 1 11 ILE 11 113 113 ILE ILE i . n D 1 12 GLY 12 114 114 GLY GLY i . n D 1 13 ALA 13 115 115 ALA ALA i . n D 1 14 GLN 14 116 116 GLN GLN i . n D 1 15 SER 15 117 117 SER SER i . n D 1 16 GLY 16 118 118 GLY GLY i . n D 1 17 LEU 17 119 119 LEU LEU i . n D 1 18 GLY 18 120 120 GLY GLY i . n D 1 19 CYS 19 121 121 CYS CYS i . n D 1 20 ASN 20 122 122 ASN ASN i . n D 1 21 SER 21 123 123 SER SER i . n D 1 22 PHE 22 124 124 PHE PHE i . n D 1 23 ARG 23 125 125 ARG ARG i . n D 1 24 TYR 24 126 126 TYR TYR i . n E 1 1 SER 1 103 103 SER SER A . n E 1 2 SER 2 104 104 SER SER A . n E 1 3 CYS 3 105 105 CYS CYS A . n E 1 4 PHE 4 106 106 PHE PHE A . n E 1 5 GLY 5 107 107 GLY GLY A . n E 1 6 GLY 6 108 108 GLY GLY A . n E 1 7 ARG 7 109 109 ARG ARG A . n E 1 8 MET 8 110 110 MET MET A . n E 1 9 ASP 9 111 111 ASP ASP A . n E 1 10 ARG 10 112 112 ARG ARG A . n E 1 11 ILE 11 113 113 ILE ILE A . n E 1 12 GLY 12 114 114 GLY GLY A . n E 1 13 ALA 13 115 115 ALA ALA A . n E 1 14 GLN 14 116 116 GLN GLN A . n E 1 15 SER 15 117 117 SER SER A . n E 1 16 GLY 16 118 118 GLY GLY A . n E 1 17 LEU 17 119 119 LEU LEU A . n E 1 18 GLY 18 120 120 GLY GLY A . n E 1 19 CYS 19 121 121 CYS CYS A . n E 1 20 ASN 20 122 122 ASN ASN A . n E 1 21 SER 21 123 123 SER SER A . n E 1 22 PHE 22 124 124 PHE PHE A . n E 1 23 ARG 23 125 125 ARG ARG A . n E 1 24 TYR 24 126 126 TYR TYR A . n F 1 1 SER 1 103 103 SER SER B . n F 1 2 SER 2 104 104 SER SER B . n F 1 3 CYS 3 105 105 CYS CYS B . n F 1 4 PHE 4 106 106 PHE PHE B . n F 1 5 GLY 5 107 107 GLY GLY B . n F 1 6 GLY 6 108 108 GLY GLY B . n F 1 7 ARG 7 109 109 ARG ARG B . n F 1 8 MET 8 110 110 MET MET B . n F 1 9 ASP 9 111 111 ASP ASP B . n F 1 10 ARG 10 112 112 ARG ARG B . n F 1 11 ILE 11 113 113 ILE ILE B . n F 1 12 GLY 12 114 114 GLY GLY B . n F 1 13 ALA 13 115 115 ALA ALA B . n F 1 14 GLN 14 116 116 GLN GLN B . n F 1 15 SER 15 117 117 SER SER B . n F 1 16 GLY 16 118 118 GLY GLY B . n F 1 17 LEU 17 119 119 LEU LEU B . n F 1 18 GLY 18 120 120 GLY GLY B . n F 1 19 CYS 19 121 121 CYS CYS B . n F 1 20 ASN 20 122 122 ASN ASN B . n F 1 21 SER 21 123 123 SER SER B . n F 1 22 PHE 22 124 124 PHE PHE B . n F 1 23 ARG 23 125 125 ARG ARG B . n F 1 24 TYR 24 126 126 TYR TYR B . n G 1 1 SER 1 103 103 SER SER C . n G 1 2 SER 2 104 104 SER SER C . n G 1 3 CYS 3 105 105 CYS CYS C . n G 1 4 PHE 4 106 106 PHE PHE C . n G 1 5 GLY 5 107 107 GLY GLY C . n G 1 6 GLY 6 108 108 GLY GLY C . n G 1 7 ARG 7 109 109 ARG ARG C . n G 1 8 MET 8 110 110 MET MET C . n G 1 9 ASP 9 111 111 ASP ASP C . n G 1 10 ARG 10 112 112 ARG ARG C . n G 1 11 ILE 11 113 113 ILE ILE C . n G 1 12 GLY 12 114 114 GLY GLY C . n G 1 13 ALA 13 115 115 ALA ALA C . n G 1 14 GLN 14 116 116 GLN GLN C . n G 1 15 SER 15 117 117 SER SER C . n G 1 16 GLY 16 118 118 GLY GLY C . n G 1 17 LEU 17 119 119 LEU LEU C . n G 1 18 GLY 18 120 120 GLY GLY C . n G 1 19 CYS 19 121 121 CYS CYS C . n G 1 20 ASN 20 122 122 ASN ASN C . n G 1 21 SER 21 123 123 SER SER C . n G 1 22 PHE 22 124 124 PHE PHE C . n G 1 23 ARG 23 125 125 ARG ARG C . n G 1 24 TYR 24 126 126 TYR TYR C . n H 1 1 SER 1 103 103 SER SER D . n H 1 2 SER 2 104 104 SER SER D . n H 1 3 CYS 3 105 105 CYS CYS D . n H 1 4 PHE 4 106 106 PHE PHE D . n H 1 5 GLY 5 107 107 GLY GLY D . n H 1 6 GLY 6 108 108 GLY GLY D . n H 1 7 ARG 7 109 109 ARG ARG D . n H 1 8 MET 8 110 110 MET MET D . n H 1 9 ASP 9 111 111 ASP ASP D . n H 1 10 ARG 10 112 112 ARG ARG D . n H 1 11 ILE 11 113 113 ILE ILE D . n H 1 12 GLY 12 114 114 GLY GLY D . n H 1 13 ALA 13 115 115 ALA ALA D . n H 1 14 GLN 14 116 116 GLN GLN D . n H 1 15 SER 15 117 117 SER SER D . n H 1 16 GLY 16 118 118 GLY GLY D . n H 1 17 LEU 17 119 119 LEU LEU D . n H 1 18 GLY 18 120 120 GLY GLY D . n H 1 19 CYS 19 121 121 CYS CYS D . n H 1 20 ASN 20 122 122 ASN ASN D . n H 1 21 SER 21 123 123 SER SER D . n H 1 22 PHE 22 124 124 PHE PHE D . n H 1 23 ARG 23 125 125 ARG ARG D . n H 1 24 TYR 24 126 126 TYR TYR D . n I 1 1 SER 1 103 103 SER SER E . n I 1 2 SER 2 104 104 SER SER E . n I 1 3 CYS 3 105 105 CYS CYS E . n I 1 4 PHE 4 106 106 PHE PHE E . n I 1 5 GLY 5 107 107 GLY GLY E . n I 1 6 GLY 6 108 108 GLY GLY E . n I 1 7 ARG 7 109 109 ARG ARG E . n I 1 8 MET 8 110 110 MET MET E . n I 1 9 ASP 9 111 111 ASP ASP E . n I 1 10 ARG 10 112 112 ARG ARG E . n I 1 11 ILE 11 113 113 ILE ILE E . n I 1 12 GLY 12 114 114 GLY GLY E . n I 1 13 ALA 13 115 115 ALA ALA E . n I 1 14 GLN 14 116 116 GLN GLN E . n I 1 15 SER 15 117 117 SER SER E . n I 1 16 GLY 16 118 118 GLY GLY E . n I 1 17 LEU 17 119 119 LEU LEU E . n I 1 18 GLY 18 120 120 GLY GLY E . n I 1 19 CYS 19 121 121 CYS CYS E . n I 1 20 ASN 20 122 122 ASN ASN E . n I 1 21 SER 21 123 123 SER SER E . n I 1 22 PHE 22 124 124 PHE PHE E . n I 1 23 ARG 23 125 125 ARG ARG E . n I 1 24 TYR 24 126 126 TYR TYR E . n J 1 1 SER 1 103 103 SER SER F . n J 1 2 SER 2 104 104 SER SER F . n J 1 3 CYS 3 105 105 CYS CYS F . n J 1 4 PHE 4 106 106 PHE PHE F . n J 1 5 GLY 5 107 107 GLY GLY F . n J 1 6 GLY 6 108 108 GLY GLY F . n J 1 7 ARG 7 109 109 ARG ARG F . n J 1 8 MET 8 110 110 MET MET F . n J 1 9 ASP 9 111 111 ASP ASP F . n J 1 10 ARG 10 112 112 ARG ARG F . n J 1 11 ILE 11 113 113 ILE ILE F . n J 1 12 GLY 12 114 114 GLY GLY F . n J 1 13 ALA 13 115 115 ALA ALA F . n J 1 14 GLN 14 116 116 GLN GLN F . n J 1 15 SER 15 117 117 SER SER F . n J 1 16 GLY 16 118 118 GLY GLY F . n J 1 17 LEU 17 119 119 LEU LEU F . n J 1 18 GLY 18 120 120 GLY GLY F . n J 1 19 CYS 19 121 121 CYS CYS F . n J 1 20 ASN 20 122 122 ASN ASN F . n J 1 21 SER 21 123 123 SER SER F . n J 1 22 PHE 22 124 124 PHE PHE F . n J 1 23 ARG 23 125 125 ARG ARG F . n J 1 24 TYR 24 126 126 TYR TYR F . n K 1 1 SER 1 103 103 SER SER G . n K 1 2 SER 2 104 104 SER SER G . n K 1 3 CYS 3 105 105 CYS CYS G . n K 1 4 PHE 4 106 106 PHE PHE G . n K 1 5 GLY 5 107 107 GLY GLY G . n K 1 6 GLY 6 108 108 GLY GLY G . n K 1 7 ARG 7 109 109 ARG ARG G . n K 1 8 MET 8 110 110 MET MET G . n K 1 9 ASP 9 111 111 ASP ASP G . n K 1 10 ARG 10 112 112 ARG ARG G . n K 1 11 ILE 11 113 113 ILE ILE G . n K 1 12 GLY 12 114 114 GLY GLY G . n K 1 13 ALA 13 115 115 ALA ALA G . n K 1 14 GLN 14 116 116 GLN GLN G . n K 1 15 SER 15 117 117 SER SER G . n K 1 16 GLY 16 118 118 GLY GLY G . n K 1 17 LEU 17 119 119 LEU LEU G . n K 1 18 GLY 18 120 120 GLY GLY G . n K 1 19 CYS 19 121 121 CYS CYS G . n K 1 20 ASN 20 122 122 ASN ASN G . n K 1 21 SER 21 123 123 SER SER G . n K 1 22 PHE 22 124 124 PHE PHE G . n K 1 23 ARG 23 125 125 ARG ARG G . n K 1 24 TYR 24 126 126 TYR TYR G . n L 1 1 SER 1 103 103 SER SER H . n L 1 2 SER 2 104 104 SER SER H . n L 1 3 CYS 3 105 105 CYS CYS H . n L 1 4 PHE 4 106 106 PHE PHE H . n L 1 5 GLY 5 107 107 GLY GLY H . n L 1 6 GLY 6 108 108 GLY GLY H . n L 1 7 ARG 7 109 109 ARG ARG H . n L 1 8 MET 8 110 110 MET MET H . n L 1 9 ASP 9 111 111 ASP ASP H . n L 1 10 ARG 10 112 112 ARG ARG H . n L 1 11 ILE 11 113 113 ILE ILE H . n L 1 12 GLY 12 114 114 GLY GLY H . n L 1 13 ALA 13 115 115 ALA ALA H . n L 1 14 GLN 14 116 116 GLN GLN H . n L 1 15 SER 15 117 117 SER SER H . n L 1 16 GLY 16 118 118 GLY GLY H . n L 1 17 LEU 17 119 119 LEU LEU H . n L 1 18 GLY 18 120 120 GLY GLY H . n L 1 19 CYS 19 121 121 CYS CYS H . n L 1 20 ASN 20 122 122 ASN ASN H . n L 1 21 SER 21 123 123 SER SER H . n L 1 22 PHE 22 124 124 PHE PHE H . n L 1 23 ARG 23 125 125 ARG ARG H . n L 1 24 TYR 24 126 126 TYR TYR H . n M 1 1 SER 1 103 103 SER SER I . n M 1 2 SER 2 104 104 SER SER I . n M 1 3 CYS 3 105 105 CYS CYS I . n M 1 4 PHE 4 106 106 PHE PHE I . n M 1 5 GLY 5 107 107 GLY GLY I . n M 1 6 GLY 6 108 108 GLY GLY I . n M 1 7 ARG 7 109 109 ARG ARG I . n M 1 8 MET 8 110 110 MET MET I . n M 1 9 ASP 9 111 111 ASP ASP I . n M 1 10 ARG 10 112 112 ARG ARG I . n M 1 11 ILE 11 113 113 ILE ILE I . n M 1 12 GLY 12 114 114 GLY GLY I . n M 1 13 ALA 13 115 115 ALA ALA I . n M 1 14 GLN 14 116 116 GLN GLN I . n M 1 15 SER 15 117 117 SER SER I . n M 1 16 GLY 16 118 118 GLY GLY I . n M 1 17 LEU 17 119 119 LEU LEU I . n M 1 18 GLY 18 120 120 GLY GLY I . n M 1 19 CYS 19 121 121 CYS CYS I . n M 1 20 ASN 20 122 122 ASN ASN I . n M 1 21 SER 21 123 123 SER SER I . n M 1 22 PHE 22 124 124 PHE PHE I . n M 1 23 ARG 23 125 125 ARG ARG I . n M 1 24 TYR 24 126 126 TYR TYR I . n N 1 1 SER 1 103 103 SER SER K . n N 1 2 SER 2 104 104 SER SER K . n N 1 3 CYS 3 105 105 CYS CYS K . n N 1 4 PHE 4 106 106 PHE PHE K . n N 1 5 GLY 5 107 107 GLY GLY K . n N 1 6 GLY 6 108 108 GLY GLY K . n N 1 7 ARG 7 109 109 ARG ARG K . n N 1 8 MET 8 110 110 MET MET K . n N 1 9 ASP 9 111 111 ASP ASP K . n N 1 10 ARG 10 112 112 ARG ARG K . n N 1 11 ILE 11 113 113 ILE ILE K . n N 1 12 GLY 12 114 114 GLY GLY K . n N 1 13 ALA 13 115 115 ALA ALA K . n N 1 14 GLN 14 116 116 GLN GLN K . n N 1 15 SER 15 117 117 SER SER K . n N 1 16 GLY 16 118 118 GLY GLY K . n N 1 17 LEU 17 119 119 LEU LEU K . n N 1 18 GLY 18 120 120 GLY GLY K . n N 1 19 CYS 19 121 121 CYS CYS K . n N 1 20 ASN 20 122 122 ASN ASN K . n N 1 21 SER 21 123 123 SER SER K . n N 1 22 PHE 22 124 124 PHE PHE K . n N 1 23 ARG 23 125 125 ARG ARG K . n N 1 24 TYR 24 126 126 TYR TYR K . n O 1 1 SER 1 103 103 SER SER M . n O 1 2 SER 2 104 104 SER SER M . n O 1 3 CYS 3 105 105 CYS CYS M . n O 1 4 PHE 4 106 106 PHE PHE M . n O 1 5 GLY 5 107 107 GLY GLY M . n O 1 6 GLY 6 108 108 GLY GLY M . n O 1 7 ARG 7 109 109 ARG ARG M . n O 1 8 MET 8 110 110 MET MET M . n O 1 9 ASP 9 111 111 ASP ASP M . n O 1 10 ARG 10 112 112 ARG ARG M . n O 1 11 ILE 11 113 113 ILE ILE M . n O 1 12 GLY 12 114 114 GLY GLY M . n O 1 13 ALA 13 115 115 ALA ALA M . n O 1 14 GLN 14 116 116 GLN GLN M . n O 1 15 SER 15 117 117 SER SER M . n O 1 16 GLY 16 118 118 GLY GLY M . n O 1 17 LEU 17 119 119 LEU LEU M . n O 1 18 GLY 18 120 120 GLY GLY M . n O 1 19 CYS 19 121 121 CYS CYS M . n O 1 20 ASN 20 122 122 ASN ASN M . n O 1 21 SER 21 123 123 SER SER M . n O 1 22 PHE 22 124 124 PHE PHE M . n O 1 23 ARG 23 125 125 ARG ARG M . n O 1 24 TYR 24 126 126 TYR TYR M . n P 1 1 SER 1 103 103 SER SER N . n P 1 2 SER 2 104 104 SER SER N . n P 1 3 CYS 3 105 105 CYS CYS N . n P 1 4 PHE 4 106 106 PHE PHE N . n P 1 5 GLY 5 107 107 GLY GLY N . n P 1 6 GLY 6 108 108 GLY GLY N . n P 1 7 ARG 7 109 109 ARG ARG N . n P 1 8 MET 8 110 110 MET MET N . n P 1 9 ASP 9 111 111 ASP ASP N . n P 1 10 ARG 10 112 112 ARG ARG N . n P 1 11 ILE 11 113 113 ILE ILE N . n P 1 12 GLY 12 114 114 GLY GLY N . n P 1 13 ALA 13 115 115 ALA ALA N . n P 1 14 GLN 14 116 116 GLN GLN N . n P 1 15 SER 15 117 117 SER SER N . n P 1 16 GLY 16 118 118 GLY GLY N . n P 1 17 LEU 17 119 119 LEU LEU N . n P 1 18 GLY 18 120 120 GLY GLY N . n P 1 19 CYS 19 121 121 CYS CYS N . n P 1 20 ASN 20 122 122 ASN ASN N . n P 1 21 SER 21 123 123 SER SER N . n P 1 22 PHE 22 124 124 PHE PHE N . n P 1 23 ARG 23 125 125 ARG ARG N . n P 1 24 TYR 24 126 126 TYR TYR N . n Q 1 1 SER 1 103 103 SER SER O . n Q 1 2 SER 2 104 104 SER SER O . n Q 1 3 CYS 3 105 105 CYS CYS O . n Q 1 4 PHE 4 106 106 PHE PHE O . n Q 1 5 GLY 5 107 107 GLY GLY O . n Q 1 6 GLY 6 108 108 GLY GLY O . n Q 1 7 ARG 7 109 109 ARG ARG O . n Q 1 8 MET 8 110 110 MET MET O . n Q 1 9 ASP 9 111 111 ASP ASP O . n Q 1 10 ARG 10 112 112 ARG ARG O . n Q 1 11 ILE 11 113 113 ILE ILE O . n Q 1 12 GLY 12 114 114 GLY GLY O . n Q 1 13 ALA 13 115 115 ALA ALA O . n Q 1 14 GLN 14 116 116 GLN GLN O . n Q 1 15 SER 15 117 117 SER SER O . n Q 1 16 GLY 16 118 118 GLY GLY O . n Q 1 17 LEU 17 119 119 LEU LEU O . n Q 1 18 GLY 18 120 120 GLY GLY O . n Q 1 19 CYS 19 121 121 CYS CYS O . n Q 1 20 ASN 20 122 122 ASN ASN O . n Q 1 21 SER 21 123 123 SER SER O . n Q 1 22 PHE 22 124 124 PHE PHE O . n Q 1 23 ARG 23 125 125 ARG ARG O . n Q 1 24 TYR 24 126 126 TYR TYR O . n R 1 1 SER 1 103 103 SER SER P . n R 1 2 SER 2 104 104 SER SER P . n R 1 3 CYS 3 105 105 CYS CYS P . n R 1 4 PHE 4 106 106 PHE PHE P . n R 1 5 GLY 5 107 107 GLY GLY P . n R 1 6 GLY 6 108 108 GLY GLY P . n R 1 7 ARG 7 109 109 ARG ARG P . n R 1 8 MET 8 110 110 MET MET P . n R 1 9 ASP 9 111 111 ASP ASP P . n R 1 10 ARG 10 112 112 ARG ARG P . n R 1 11 ILE 11 113 113 ILE ILE P . n R 1 12 GLY 12 114 114 GLY GLY P . n R 1 13 ALA 13 115 115 ALA ALA P . n R 1 14 GLN 14 116 116 GLN GLN P . n R 1 15 SER 15 117 117 SER SER P . n R 1 16 GLY 16 118 118 GLY GLY P . n R 1 17 LEU 17 119 119 LEU LEU P . n R 1 18 GLY 18 120 120 GLY GLY P . n R 1 19 CYS 19 121 121 CYS CYS P . n R 1 20 ASN 20 122 122 ASN ASN P . n R 1 21 SER 21 123 123 SER SER P . n R 1 22 PHE 22 124 124 PHE PHE P . n R 1 23 ARG 23 125 125 ARG ARG P . n R 1 24 TYR 24 126 126 TYR TYR P . n S 1 1 SER 1 103 103 SER SER Q . n S 1 2 SER 2 104 104 SER SER Q . n S 1 3 CYS 3 105 105 CYS CYS Q . n S 1 4 PHE 4 106 106 PHE PHE Q . n S 1 5 GLY 5 107 107 GLY GLY Q . n S 1 6 GLY 6 108 108 GLY GLY Q . n S 1 7 ARG 7 109 109 ARG ARG Q . n S 1 8 MET 8 110 110 MET MET Q . n S 1 9 ASP 9 111 111 ASP ASP Q . n S 1 10 ARG 10 112 112 ARG ARG Q . n S 1 11 ILE 11 113 113 ILE ILE Q . n S 1 12 GLY 12 114 114 GLY GLY Q . n S 1 13 ALA 13 115 115 ALA ALA Q . n S 1 14 GLN 14 116 116 GLN GLN Q . n S 1 15 SER 15 117 117 SER SER Q . n S 1 16 GLY 16 118 118 GLY GLY Q . n S 1 17 LEU 17 119 119 LEU LEU Q . n S 1 18 GLY 18 120 120 GLY GLY Q . n S 1 19 CYS 19 121 121 CYS CYS Q . n S 1 20 ASN 20 122 122 ASN ASN Q . n S 1 21 SER 21 123 123 SER SER Q . n S 1 22 PHE 22 124 124 PHE PHE Q . n S 1 23 ARG 23 125 125 ARG ARG Q . n S 1 24 TYR 24 126 126 TYR TYR Q . n T 1 1 SER 1 103 103 SER SER R . n T 1 2 SER 2 104 104 SER SER R . n T 1 3 CYS 3 105 105 CYS CYS R . n T 1 4 PHE 4 106 106 PHE PHE R . n T 1 5 GLY 5 107 107 GLY GLY R . n T 1 6 GLY 6 108 108 GLY GLY R . n T 1 7 ARG 7 109 109 ARG ARG R . n T 1 8 MET 8 110 110 MET MET R . n T 1 9 ASP 9 111 111 ASP ASP R . n T 1 10 ARG 10 112 112 ARG ARG R . n T 1 11 ILE 11 113 113 ILE ILE R . n T 1 12 GLY 12 114 114 GLY GLY R . n T 1 13 ALA 13 115 115 ALA ALA R . n T 1 14 GLN 14 116 116 GLN GLN R . n T 1 15 SER 15 117 117 SER SER R . n T 1 16 GLY 16 118 118 GLY GLY R . n T 1 17 LEU 17 119 119 LEU LEU R . n T 1 18 GLY 18 120 120 GLY GLY R . n T 1 19 CYS 19 121 121 CYS CYS R . n T 1 20 ASN 20 122 122 ASN ASN R . n T 1 21 SER 21 123 123 SER SER R . n T 1 22 PHE 22 124 124 PHE PHE R . n T 1 23 ARG 23 125 125 ARG ARG R . n T 1 24 TYR 24 126 126 TYR TYR R . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9RBD _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9RBD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9RBD _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9RBD _struct.title 'Cryo-EM structure of ANP amyloids from left atrial appendage of atrial fibrillation patient - polymorph A' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9RBD _struct_keywords.text 'amyloid, cardiac amyloidosis, in vivo, aggregation, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 1 ? L N N 1 ? M N N 1 ? N N N 1 ? O N N 1 ? P N N 1 ? Q N N 1 ? R N N 1 ? S N N 1 ? T N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ANF_HUMAN _struct_ref.pdbx_db_accession P01160 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code SSCFGGRMDRIGAQSGLGCNSFRY _struct_ref.pdbx_align_begin 128 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9RBD J 1 ? 24 ? P01160 128 ? 151 ? 103 126 2 1 9RBD L 1 ? 24 ? P01160 128 ? 151 ? 103 126 3 1 9RBD g 1 ? 24 ? P01160 128 ? 151 ? 103 126 4 1 9RBD i 1 ? 24 ? P01160 128 ? 151 ? 103 126 5 1 9RBD A 1 ? 24 ? P01160 128 ? 151 ? 103 126 6 1 9RBD B 1 ? 24 ? P01160 128 ? 151 ? 103 126 7 1 9RBD C 1 ? 24 ? P01160 128 ? 151 ? 103 126 8 1 9RBD D 1 ? 24 ? P01160 128 ? 151 ? 103 126 9 1 9RBD E 1 ? 24 ? P01160 128 ? 151 ? 103 126 10 1 9RBD F 1 ? 24 ? P01160 128 ? 151 ? 103 126 11 1 9RBD G 1 ? 24 ? P01160 128 ? 151 ? 103 126 12 1 9RBD H 1 ? 24 ? P01160 128 ? 151 ? 103 126 13 1 9RBD I 1 ? 24 ? P01160 128 ? 151 ? 103 126 14 1 9RBD K 1 ? 24 ? P01160 128 ? 151 ? 103 126 15 1 9RBD M 1 ? 24 ? P01160 128 ? 151 ? 103 126 16 1 9RBD N 1 ? 24 ? P01160 128 ? 151 ? 103 126 17 1 9RBD O 1 ? 24 ? P01160 128 ? 151 ? 103 126 18 1 9RBD P 1 ? 24 ? P01160 128 ? 151 ? 103 126 19 1 9RBD Q 1 ? 24 ? P01160 128 ? 151 ? 103 126 20 1 9RBD R 1 ? 24 ? P01160 128 ? 151 ? 103 126 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 20-meric _pdbx_struct_assembly.oligomeric_count 20 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 3 SG ? ? ? 1_555 C CYS 19 SG ? ? J CYS 105 g CYS 121 1_555 ? ? ? ? ? ? ? 2.130 ? ? disulf2 disulf ? ? B CYS 3 SG ? ? ? 1_555 D CYS 19 SG ? ? L CYS 105 i CYS 121 1_555 ? ? ? ? ? ? ? 2.110 ? ? disulf3 disulf ? ? E CYS 3 SG ? ? ? 1_555 G CYS 19 SG ? ? A CYS 105 C CYS 121 1_555 ? ? ? ? ? ? ? 2.149 ? ? disulf4 disulf ? ? F CYS 3 SG ? ? ? 1_555 H CYS 19 SG ? ? B CYS 105 D CYS 121 1_555 ? ? ? ? ? ? ? 1.914 ? ? disulf5 disulf ? ? I CYS 3 SG ? ? ? 1_555 K CYS 19 SG ? ? E CYS 105 G CYS 121 1_555 ? ? ? ? ? ? ? 2.111 ? ? disulf6 disulf ? ? J CYS 3 SG ? ? ? 1_555 L CYS 19 SG ? ? F CYS 105 H CYS 121 1_555 ? ? ? ? ? ? ? 1.944 ? ? disulf7 disulf ? ? M CYS 3 SG ? ? ? 1_555 O CYS 19 SG ? ? I CYS 105 M CYS 121 1_555 ? ? ? ? ? ? ? 1.949 ? ? disulf8 disulf ? ? N CYS 3 SG ? ? ? 1_555 P CYS 19 SG ? ? K CYS 105 N CYS 121 1_555 ? ? ? ? ? ? ? 2.212 ? ? disulf9 disulf ? ? Q CYS 3 SG ? ? ? 1_555 S CYS 19 SG ? ? O CYS 105 Q CYS 121 1_555 ? ? ? ? ? ? ? 1.800 ? ? disulf10 disulf ? ? R CYS 3 SG ? ? ? 1_555 T CYS 19 SG ? ? P CYS 105 R CYS 121 1_555 ? ? ? ? ? ? ? 2.001 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 3 ? CYS C 19 ? CYS J 105 ? 1_555 CYS g 121 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS B 3 ? CYS D 19 ? CYS L 105 ? 1_555 CYS i 121 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS E 3 ? CYS G 19 ? CYS A 105 ? 1_555 CYS C 121 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS F 3 ? CYS H 19 ? CYS B 105 ? 1_555 CYS D 121 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS I 3 ? CYS K 19 ? CYS E 105 ? 1_555 CYS G 121 ? 1_555 SG SG . . . None 'Disulfide bridge' 6 CYS J 3 ? CYS L 19 ? CYS F 105 ? 1_555 CYS H 121 ? 1_555 SG SG . . . None 'Disulfide bridge' 7 CYS M 3 ? CYS O 19 ? CYS I 105 ? 1_555 CYS M 121 ? 1_555 SG SG . . . None 'Disulfide bridge' 8 CYS N 3 ? CYS P 19 ? CYS K 105 ? 1_555 CYS N 121 ? 1_555 SG SG . . . None 'Disulfide bridge' 9 CYS Q 3 ? CYS S 19 ? CYS O 105 ? 1_555 CYS Q 121 ? 1_555 SG SG . . . None 'Disulfide bridge' 10 CYS R 3 ? CYS T 19 ? CYS P 105 ? 1_555 CYS R 121 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? AA3 ? 5 ? AA4 ? 5 ? AA5 ? 5 ? AA6 ? 5 ? AA7 ? 5 ? AA8 ? 4 ? AA9 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA3 4 5 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA4 3 4 ? parallel AA4 4 5 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA5 3 4 ? parallel AA5 4 5 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA6 3 4 ? parallel AA6 4 5 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA7 3 4 ? parallel AA7 4 5 ? parallel AA8 1 2 ? parallel AA8 2 3 ? parallel AA8 3 4 ? parallel AA9 1 2 ? parallel AA9 2 3 ? parallel AA9 3 4 ? parallel AA9 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 CYS A 3 ? PHE A 4 ? CYS J 105 PHE J 106 AA1 2 CYS E 3 ? PHE E 4 ? CYS A 105 PHE A 106 AA1 3 CYS I 3 ? PHE I 4 ? CYS E 105 PHE E 106 AA1 4 CYS M 3 ? PHE M 4 ? CYS I 105 PHE I 106 AA1 5 CYS Q 3 ? PHE Q 4 ? CYS O 105 PHE O 106 AA2 1 ARG A 7 ? MET A 8 ? ARG J 109 MET J 110 AA2 2 ARG E 7 ? MET E 8 ? ARG A 109 MET A 110 AA2 3 ARG I 7 ? MET I 8 ? ARG E 109 MET E 110 AA2 4 ARG M 7 ? MET M 8 ? ARG I 109 MET I 110 AA2 5 ARG Q 7 ? MET Q 8 ? ARG O 109 MET O 110 AA3 1 GLY A 12 ? LEU A 17 ? GLY J 114 LEU J 119 AA3 2 GLY E 12 ? LEU E 17 ? GLY A 114 LEU A 119 AA3 3 GLY I 12 ? LEU I 17 ? GLY E 114 LEU E 119 AA3 4 GLY M 12 ? LEU M 17 ? GLY I 114 LEU I 119 AA3 5 GLY Q 12 ? LEU Q 17 ? GLY O 114 LEU O 119 AA4 1 CYS B 3 ? PHE B 4 ? CYS L 105 PHE L 106 AA4 2 CYS F 3 ? PHE F 4 ? CYS B 105 PHE B 106 AA4 3 CYS J 3 ? PHE J 4 ? CYS F 105 PHE F 106 AA4 4 CYS N 3 ? PHE N 4 ? CYS K 105 PHE K 106 AA4 5 CYS R 3 ? PHE R 4 ? CYS P 105 PHE P 106 AA5 1 ARG B 7 ? LEU B 17 ? ARG L 109 LEU L 119 AA5 2 ARG F 7 ? LEU F 17 ? ARG B 109 LEU B 119 AA5 3 ARG J 7 ? LEU J 17 ? ARG F 109 LEU F 119 AA5 4 ARG N 7 ? LEU N 17 ? ARG K 109 LEU K 119 AA5 5 ARG R 7 ? LEU R 17 ? ARG P 109 LEU P 119 AA6 1 SER C 2 ? CYS C 3 ? SER g 104 CYS g 105 AA6 2 SER G 2 ? CYS G 3 ? SER C 104 CYS C 105 AA6 3 SER K 2 ? CYS K 3 ? SER G 104 CYS G 105 AA6 4 SER O 2 ? CYS O 3 ? SER M 104 CYS M 105 AA6 5 SER S 2 ? CYS S 3 ? SER Q 104 CYS Q 105 AA7 1 MET C 8 ? LEU C 17 ? MET g 110 LEU g 119 AA7 2 MET G 8 ? LEU G 17 ? MET C 110 LEU C 119 AA7 3 MET K 8 ? LEU K 17 ? MET G 110 LEU G 119 AA7 4 MET O 8 ? LEU O 17 ? MET M 110 LEU M 119 AA7 5 MET S 8 ? LEU S 17 ? MET Q 110 LEU Q 119 AA8 1 ARG D 7 ? MET D 8 ? ARG i 109 MET i 110 AA8 2 ARG H 7 ? MET H 8 ? ARG D 109 MET D 110 AA8 3 ARG L 7 ? MET L 8 ? ARG H 109 MET H 110 AA8 4 ARG P 7 ? MET P 8 ? ARG N 109 MET N 110 AA9 1 GLY D 12 ? LEU D 17 ? GLY i 114 LEU i 119 AA9 2 GLY H 12 ? LEU H 17 ? GLY D 114 LEU D 119 AA9 3 GLY L 12 ? LEU L 17 ? GLY H 114 LEU H 119 AA9 4 GLY P 12 ? LEU P 17 ? GLY N 114 LEU N 119 AA9 5 GLY T 12 ? LEU T 17 ? GLY R 114 LEU R 119 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N CYS A 3 ? N CYS J 105 O PHE E 4 ? O PHE A 106 AA1 2 3 N CYS E 3 ? N CYS A 105 O PHE I 4 ? O PHE E 106 AA1 3 4 N CYS I 3 ? N CYS E 105 O PHE M 4 ? O PHE I 106 AA1 4 5 N CYS M 3 ? N CYS I 105 O PHE Q 4 ? O PHE O 106 AA2 1 2 N MET A 8 ? N MET J 110 O ARG E 7 ? O ARG A 109 AA2 2 3 N MET E 8 ? N MET A 110 O ARG I 7 ? O ARG E 109 AA2 3 4 N MET I 8 ? N MET E 110 O ARG M 7 ? O ARG I 109 AA2 4 5 N MET M 8 ? N MET I 110 O ARG Q 7 ? O ARG O 109 AA3 1 2 N ALA A 13 ? N ALA J 115 O GLN E 14 ? O GLN A 116 AA3 2 3 N LEU E 17 ? N LEU A 119 O GLY I 16 ? O GLY E 118 AA3 3 4 N LEU I 17 ? N LEU E 119 O GLY M 16 ? O GLY I 118 AA3 4 5 N ALA M 13 ? N ALA I 115 O GLY Q 12 ? O GLY O 114 AA4 1 2 N CYS B 3 ? N CYS L 105 O PHE F 4 ? O PHE B 106 AA4 2 3 N CYS F 3 ? N CYS B 105 O PHE J 4 ? O PHE F 106 AA4 3 4 N CYS J 3 ? N CYS F 105 O PHE N 4 ? O PHE K 106 AA4 4 5 N CYS N 3 ? N CYS K 105 O PHE R 4 ? O PHE P 106 AA5 1 2 N MET B 8 ? N MET L 110 O ARG F 7 ? O ARG B 109 AA5 2 3 N LEU F 17 ? N LEU B 119 O GLY J 16 ? O GLY F 118 AA5 3 4 N MET J 8 ? N MET F 110 O ARG N 7 ? O ARG K 109 AA5 4 5 N MET N 8 ? N MET K 110 O ARG R 7 ? O ARG P 109 AA6 1 2 N CYS C 3 ? N CYS g 105 O SER G 2 ? O SER C 104 AA6 2 3 N CYS G 3 ? N CYS C 105 O SER K 2 ? O SER G 104 AA6 3 4 N CYS K 3 ? N CYS G 105 O SER O 2 ? O SER M 104 AA6 4 5 N CYS O 3 ? N CYS M 105 O SER S 2 ? O SER Q 104 AA7 1 2 N LEU C 17 ? N LEU g 119 O GLY G 16 ? O GLY C 118 AA7 2 3 N ALA G 13 ? N ALA C 115 O GLN K 14 ? O GLN G 116 AA7 3 4 N ILE K 11 ? N ILE G 113 O ARG O 10 ? O ARG M 112 AA7 4 5 N ALA O 13 ? N ALA M 115 O GLN S 14 ? O GLN Q 116 AA8 1 2 N MET D 8 ? N MET i 110 O ARG H 7 ? O ARG D 109 AA8 2 3 N MET H 8 ? N MET D 110 O ARG L 7 ? O ARG H 109 AA8 3 4 N MET L 8 ? N MET H 110 O ARG P 7 ? O ARG N 109 AA9 1 2 N LEU D 17 ? N LEU i 119 O GLY H 16 ? O GLY D 118 AA9 2 3 N ALA H 13 ? N ALA D 115 O GLN L 14 ? O GLN H 116 AA9 3 4 N ALA L 13 ? N ALA H 115 O GLN P 14 ? O GLN N 116 AA9 4 5 N ALA P 13 ? N ALA N 115 O GLY T 12 ? O GLY R 114 # _pdbx_entry_details.entry_id 9RBD _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9RBD _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value 73.85 _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol 'AB INITIO MODEL' # _em_3d_reconstruction.entry_id 9RBD _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.96 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 67547 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details 'MilliQ H2O' _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Atrial natriuretic peptide amyloid fibrils polymorph A' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9RBD _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS GLACIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 2200 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 9RBD _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9RBD _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state 'HELICAL ARRAY' _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLY N N N N 108 GLY CA C N N 109 GLY C C N N 110 GLY O O N N 111 GLY OXT O N N 112 GLY H H N N 113 GLY H2 H N N 114 GLY HA2 H N N 115 GLY HA3 H N N 116 GLY HXT H N N 117 ILE N N N N 118 ILE CA C N S 119 ILE C C N N 120 ILE O O N N 121 ILE CB C N S 122 ILE CG1 C N N 123 ILE CG2 C N N 124 ILE CD1 C N N 125 ILE OXT O N N 126 ILE H H N N 127 ILE H2 H N N 128 ILE HA H N N 129 ILE HB H N N 130 ILE HG12 H N N 131 ILE HG13 H N N 132 ILE HG21 H N N 133 ILE HG22 H N N 134 ILE HG23 H N N 135 ILE HD11 H N N 136 ILE HD12 H N N 137 ILE HD13 H N N 138 ILE HXT H N N 139 LEU N N N N 140 LEU CA C N S 141 LEU C C N N 142 LEU O O N N 143 LEU CB C N N 144 LEU CG C N N 145 LEU CD1 C N N 146 LEU CD2 C N N 147 LEU OXT O N N 148 LEU H H N N 149 LEU H2 H N N 150 LEU HA H N N 151 LEU HB2 H N N 152 LEU HB3 H N N 153 LEU HG H N N 154 LEU HD11 H N N 155 LEU HD12 H N N 156 LEU HD13 H N N 157 LEU HD21 H N N 158 LEU HD22 H N N 159 LEU HD23 H N N 160 LEU HXT H N N 161 MET N N N N 162 MET CA C N S 163 MET C C N N 164 MET O O N N 165 MET CB C N N 166 MET CG C N N 167 MET SD S N N 168 MET CE C N N 169 MET OXT O N N 170 MET H H N N 171 MET H2 H N N 172 MET HA H N N 173 MET HB2 H N N 174 MET HB3 H N N 175 MET HG2 H N N 176 MET HG3 H N N 177 MET HE1 H N N 178 MET HE2 H N N 179 MET HE3 H N N 180 MET HXT H N N 181 PHE N N N N 182 PHE CA C N S 183 PHE C C N N 184 PHE O O N N 185 PHE CB C N N 186 PHE CG C Y N 187 PHE CD1 C Y N 188 PHE CD2 C Y N 189 PHE CE1 C Y N 190 PHE CE2 C Y N 191 PHE CZ C Y N 192 PHE OXT O N N 193 PHE H H N N 194 PHE H2 H N N 195 PHE HA H N N 196 PHE HB2 H N N 197 PHE HB3 H N N 198 PHE HD1 H N N 199 PHE HD2 H N N 200 PHE HE1 H N N 201 PHE HE2 H N N 202 PHE HZ H N N 203 PHE HXT H N N 204 SER N N N N 205 SER CA C N S 206 SER C C N N 207 SER O O N N 208 SER CB C N N 209 SER OG O N N 210 SER OXT O N N 211 SER H H N N 212 SER H2 H N N 213 SER HA H N N 214 SER HB2 H N N 215 SER HB3 H N N 216 SER HG H N N 217 SER HXT H N N 218 TYR N N N N 219 TYR CA C N S 220 TYR C C N N 221 TYR O O N N 222 TYR CB C N N 223 TYR CG C Y N 224 TYR CD1 C Y N 225 TYR CD2 C Y N 226 TYR CE1 C Y N 227 TYR CE2 C Y N 228 TYR CZ C Y N 229 TYR OH O N N 230 TYR OXT O N N 231 TYR H H N N 232 TYR H2 H N N 233 TYR HA H N N 234 TYR HB2 H N N 235 TYR HB3 H N N 236 TYR HD1 H N N 237 TYR HD2 H N N 238 TYR HE1 H N N 239 TYR HE2 H N N 240 TYR HH H N N 241 TYR HXT H N N 242 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLY N CA sing N N 102 GLY N H sing N N 103 GLY N H2 sing N N 104 GLY CA C sing N N 105 GLY CA HA2 sing N N 106 GLY CA HA3 sing N N 107 GLY C O doub N N 108 GLY C OXT sing N N 109 GLY OXT HXT sing N N 110 ILE N CA sing N N 111 ILE N H sing N N 112 ILE N H2 sing N N 113 ILE CA C sing N N 114 ILE CA CB sing N N 115 ILE CA HA sing N N 116 ILE C O doub N N 117 ILE C OXT sing N N 118 ILE CB CG1 sing N N 119 ILE CB CG2 sing N N 120 ILE CB HB sing N N 121 ILE CG1 CD1 sing N N 122 ILE CG1 HG12 sing N N 123 ILE CG1 HG13 sing N N 124 ILE CG2 HG21 sing N N 125 ILE CG2 HG22 sing N N 126 ILE CG2 HG23 sing N N 127 ILE CD1 HD11 sing N N 128 ILE CD1 HD12 sing N N 129 ILE CD1 HD13 sing N N 130 ILE OXT HXT sing N N 131 LEU N CA sing N N 132 LEU N H sing N N 133 LEU N H2 sing N N 134 LEU CA C sing N N 135 LEU CA CB sing N N 136 LEU CA HA sing N N 137 LEU C O doub N N 138 LEU C OXT sing N N 139 LEU CB CG sing N N 140 LEU CB HB2 sing N N 141 LEU CB HB3 sing N N 142 LEU CG CD1 sing N N 143 LEU CG CD2 sing N N 144 LEU CG HG sing N N 145 LEU CD1 HD11 sing N N 146 LEU CD1 HD12 sing N N 147 LEU CD1 HD13 sing N N 148 LEU CD2 HD21 sing N N 149 LEU CD2 HD22 sing N N 150 LEU CD2 HD23 sing N N 151 LEU OXT HXT sing N N 152 MET N CA sing N N 153 MET N H sing N N 154 MET N H2 sing N N 155 MET CA C sing N N 156 MET CA CB sing N N 157 MET CA HA sing N N 158 MET C O doub N N 159 MET C OXT sing N N 160 MET CB CG sing N N 161 MET CB HB2 sing N N 162 MET CB HB3 sing N N 163 MET CG SD sing N N 164 MET CG HG2 sing N N 165 MET CG HG3 sing N N 166 MET SD CE sing N N 167 MET CE HE1 sing N N 168 MET CE HE2 sing N N 169 MET CE HE3 sing N N 170 MET OXT HXT sing N N 171 PHE N CA sing N N 172 PHE N H sing N N 173 PHE N H2 sing N N 174 PHE CA C sing N N 175 PHE CA CB sing N N 176 PHE CA HA sing N N 177 PHE C O doub N N 178 PHE C OXT sing N N 179 PHE CB CG sing N N 180 PHE CB HB2 sing N N 181 PHE CB HB3 sing N N 182 PHE CG CD1 doub Y N 183 PHE CG CD2 sing Y N 184 PHE CD1 CE1 sing Y N 185 PHE CD1 HD1 sing N N 186 PHE CD2 CE2 doub Y N 187 PHE CD2 HD2 sing N N 188 PHE CE1 CZ doub Y N 189 PHE CE1 HE1 sing N N 190 PHE CE2 CZ sing Y N 191 PHE CE2 HE2 sing N N 192 PHE CZ HZ sing N N 193 PHE OXT HXT sing N N 194 SER N CA sing N N 195 SER N H sing N N 196 SER N H2 sing N N 197 SER CA C sing N N 198 SER CA CB sing N N 199 SER CA HA sing N N 200 SER C O doub N N 201 SER C OXT sing N N 202 SER CB OG sing N N 203 SER CB HB2 sing N N 204 SER CB HB3 sing N N 205 SER OG HG sing N N 206 SER OXT HXT sing N N 207 TYR N CA sing N N 208 TYR N H sing N N 209 TYR N H2 sing N N 210 TYR CA C sing N N 211 TYR CA CB sing N N 212 TYR CA HA sing N N 213 TYR C O doub N N 214 TYR C OXT sing N N 215 TYR CB CG sing N N 216 TYR CB HB2 sing N N 217 TYR CB HB3 sing N N 218 TYR CG CD1 doub Y N 219 TYR CG CD2 sing Y N 220 TYR CD1 CE1 sing Y N 221 TYR CD1 HD1 sing N N 222 TYR CD2 CE2 doub Y N 223 TYR CD2 HD2 sing N N 224 TYR CE1 CZ doub Y N 225 TYR CE1 HE1 sing N N 226 TYR CE2 CZ sing Y N 227 TYR CE2 HE2 sing N N 228 TYR CZ OH sing N N 229 TYR OH HH sing N N 230 TYR OXT HXT sing N N 231 # _em_admin.current_status REL _em_admin.deposition_date 2025-05-22 _em_admin.deposition_site PDBE _em_admin.entry_id 9RBD _em_admin.last_update 2025-11-12 _em_admin.map_release_date 2025-08-27 _em_admin.title 'Cryo-EM structure of ANP amyloids from left atrial appendage of atrial fibrillation patient - polymorph A' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units KILODALTONS/NANOMETER _em_entity_assembly_molwt.value 10 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C21 _em_helical_entity.angular_rotation_per_subunit 178.9 _em_helical_entity.axial_rise_per_subunit 2.35 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 41 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? ? MASKING ? 3 ? ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? RELION 3.1 ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? Coot 0.8.2 ? OTHER ? 8 ? ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 9 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? CLASSIFICATION ? 11 1 ? ? RELION 3.1 ? RECONSTRUCTION ? 12 1 ? ? RELION 3.1 ? 'MODEL REFINEMENT' ? 13 ? 1 ? PHENIX 1.19 ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Fondazione CARIPLO' Italy GJC23044 1 'Italian Ministry of Health' Italy 20207XLJB2 2 # _atom_sites.entry_id 9RBD _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #