HEADER TRANSFERASE 04-JUN-25 9RFS TITLE METHYLTRANSFERASE XISE IN COMPLEX WITH SAH, OPEN STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUINONE BIOSYNTHESIS O-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UBIQUINONE BIOSYNTHESIS METHYLTRANSFERASE UBIE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENORHABDUS HOMINICKII; SOURCE 3 ORGANISM_TAXID: 351679; SOURCE 4 GENE: XHOM_04777; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-DUET-1 KEYWDS PEPTIDE METHYLTRANSFERASE, TRANS-METHYLATION, NRPS, SAH, XILDIVALINE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.RILL,M.WESTPHALEN,M.LAMBERIOUX,J.CHEKAIBAN,M.DIDIER,M.GROLL, AUTHOR 2 E.M.HUBER,H.B.BODE REVDAT 1 17-JUN-26 9RFS 0 JRNL AUTH A.RILL,M.WESTPHALEN,M.LAMBERIOUX,J.CHEKAIBAN,M.DIDIER, JRNL AUTH 2 M.GROLL,E.M.HUBER,H.B.BODE JRNL TITL IDENTIFICATION AND BIOSYNTHESIS OF XILDIVALINE, A NOVEL AND JRNL TITL 2 WIDESPREAD PEPTIDE DEFORMYLASE INHIBITOR FROM JRNL TITL 3 GAMMAPROTEOBACTERIA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 113260 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5961 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8328 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 438 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4308 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 114 REMARK 3 SOLVENT ATOMS : 411 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.41000 REMARK 3 B22 (A**2) : -0.15000 REMARK 3 B33 (A**2) : 0.48000 REMARK 3 B12 (A**2) : -0.04000 REMARK 3 B13 (A**2) : 0.29000 REMARK 3 B23 (A**2) : -0.67000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.060 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.053 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.036 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.131 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4609 ; 0.005 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4346 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6213 ; 1.260 ; 1.643 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10029 ; 1.305 ; 1.586 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 554 ; 6.880 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 258 ;33.018 ;22.868 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 835 ;11.940 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;17.708 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 576 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5232 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1094 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2192 ; 1.397 ; 2.065 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2192 ; 1.397 ; 2.065 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2754 ; 1.845 ; 3.098 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2755 ; 1.847 ; 3.099 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2417 ; 1.915 ; 2.545 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2418 ; 1.914 ; 2.546 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3460 ; 2.468 ; 3.663 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5076 ; 3.287 ;25.918 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5000 ; 3.100 ;25.463 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 8955 ; 0.818 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 0.9188 -0.2877 1.2315 REMARK 3 T TENSOR REMARK 3 T11: 0.0237 T22: 0.0211 REMARK 3 T33: 0.0025 T12: 0.0085 REMARK 3 T13: 0.0009 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.0053 L22: 0.0235 REMARK 3 L33: 0.0600 L12: 0.0053 REMARK 3 L13: -0.0177 L23: -0.0217 REMARK 3 S TENSOR REMARK 3 S11: 0.0004 S12: -0.0006 S13: -0.0006 REMARK 3 S21: 0.0006 S22: -0.0019 S23: -0.0005 REMARK 3 S31: 0.0001 S32: 0.0011 S33: 0.0015 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 301 REMARK 3 ORIGIN FOR THE GROUP (A): 15.4460 -24.7325 -35.0629 REMARK 3 T TENSOR REMARK 3 T11: 0.0255 T22: 0.0195 REMARK 3 T33: 0.0023 T12: 0.0082 REMARK 3 T13: 0.0013 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.0262 L22: 0.0036 REMARK 3 L33: 0.0510 L12: -0.0015 REMARK 3 L13: -0.0207 L23: -0.0097 REMARK 3 S TENSOR REMARK 3 S11: -0.0011 S12: 0.0008 S13: -0.0004 REMARK 3 S21: -0.0007 S22: 0.0001 S23: -0.0001 REMARK 3 S31: 0.0012 S32: -0.0006 S33: 0.0009 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9RFS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JUN-25. REMARK 100 THE DEPOSITION ID IS D_1292148323. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 119221 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.58900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM MGSO4, 20% PEG 4000, 10% REMARK 280 GLYCEROL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 38 REMARK 465 GLY A 39 REMARK 465 SER A 40 REMARK 465 GLU A 41 REMARK 465 PHE A 42 REMARK 465 ALA A 43 REMARK 465 SER A 44 REMARK 465 GLN B 38 REMARK 465 GLY B 39 REMARK 465 SER B 40 REMARK 465 GLU B 41 REMARK 465 PHE B 42 REMARK 465 ALA B 43 REMARK 465 SER B 44 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 75 20.06 -77.30 REMARK 500 ARG A 141 44.98 -104.45 REMARK 500 ALA B 12 49.71 -85.79 REMARK 500 ARG B 141 45.16 -103.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 15 OG REMARK 620 2 GLU A 225 OE1 88.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 104 OE2 REMARK 620 2 HOH A 418 O 98.1 REMARK 620 3 HOH A 456 O 84.5 93.3 REMARK 620 4 HOH A 498 O 85.0 167.5 99.1 REMARK 620 5 HOH B 432 O 96.6 84.2 177.3 83.4 REMARK 620 6 HOH B 459 O 173.4 86.9 90.9 91.1 88.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 307 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 247 O REMARK 620 2 HOH A 453 O 125.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 249 NE2 REMARK 620 2 GLU A 268 OE2 87.9 REMARK 620 3 GOL A 312 O1 155.1 68.5 REMARK 620 4 HOH A 516 O 71.2 124.8 128.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 308 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 272 O REMARK 620 2 HOH A 444 O 115.3 REMARK 620 3 HOH B 511 O 85.8 129.2 REMARK 620 4 HOH B 518 O 128.3 113.0 77.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 439 O REMARK 620 2 HOH A 474 O 86.4 REMARK 620 3 GLU B 104 OE2 174.4 96.7 REMARK 620 4 HOH B 415 O 85.6 85.5 99.3 REMARK 620 5 HOH B 442 O 94.8 178.5 82.3 93.5 REMARK 620 6 HOH B 472 O 91.9 81.0 83.9 166.5 99.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 308 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 521 O REMARK 620 2 HOH A 525 O 76.5 REMARK 620 3 ALA B 272 O 85.9 127.4 REMARK 620 4 HOH B 469 O 128.2 112.3 117.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 15 OG REMARK 620 2 GLU B 225 OE1 76.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 307 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 70 OD1 REMARK 620 2 ASP B 70 OD2 44.3 REMARK 620 N 1 DBREF1 9RFS A 2 272 UNP A0A1V0M4F6_XENHO DBREF2 9RFS A A0A1V0M4F6 2 272 DBREF1 9RFS B 2 272 UNP A0A1V0M4F6_XENHO DBREF2 9RFS B A0A1V0M4F6 2 272 SEQADV 9RFS SER A 1 UNP A0A1V0M4F EXPRESSION TAG SEQADV 9RFS SER B 1 UNP A0A1V0M4F EXPRESSION TAG SEQRES 1 A 272 SER ASN THR GLU ILE LEU LYS ASP PHE LEU PRO ALA ILE SEQRES 2 A 272 ARG SER SER ASP TYR ILE MET ASP PHE GLY ASP ARG ALA SEQRES 3 A 272 PHE SER GLN ARG MET LEU LYS GLU HIS LEU ASN GLN GLY SEQRES 4 A 272 SER GLU PHE ALA SER ARG THR ILE SER GLU ILE ASP ARG SEQRES 5 A 272 GLN VAL SER PHE LEU PHE ASP LYS TYR LEU THR GLN GLY SEQRES 6 A 272 ASP LYS LEU LEU ASP LEU GLY CYS GLY PRO GLY LEU TYR SEQRES 7 A 272 THR THR ARG PHE ALA GLU LYS GLY VAL THR THR LEU GLY SEQRES 8 A 272 VAL ASP VAL SER PRO ALA ALA ILE GLU TYR ALA LYS GLU SEQRES 9 A 272 HIS ALA THR SER ALA GLU THR TYR GLN GLN ILE ASP LEU SEQRES 10 A 272 ASP LYS PHE ASP SER ASN GLU GLN PHE ASP LEU VAL LEU SEQRES 11 A 272 LEU LEU PHE GLY ILE ALA ASN ASN LEU GLU ARG LEU ASP SEQRES 12 A 272 THR LEU LEU ARG LYS LEU LYS ARG ASN LEU LYS SER GLY SEQRES 13 A 272 ALA LYS LEU VAL PHE GLU LEU MET ASP LEU GLU PHE MET SEQRES 14 A 272 LYS SER LEU GLU GLN GLY ASN GLY THR TRP VAL PHE HIS SEQRES 15 A 272 PRO GLU GLY GLY LEU LEU SER GLU GLN PRO HIS TYR GLN SEQRES 16 A 272 LEU CYS ARG ARG VAL TRP PHE GLU ASP GLN LYS THR LEU SEQRES 17 A 272 ILE ASP ARG ASN MET VAL ILE THR ASP SER ALA GLN THR SEQRES 18 A 272 SER MET TYR GLU GLY VAL PHE PHE GLY PHE GLU LEU TYR SEQRES 19 A 272 ASP PHE ASN GLN LEU LEU GLN LYS ALA GLY TYR LYS GLU SEQRES 20 A 272 ALA HIS ILE ILE CYS ARG GLN LEU GLU LYS GLY GLU LEU SEQRES 21 A 272 THR LYS HIS PHE PHE MET VAL GLU THR GLU LEU ALA SEQRES 1 B 272 SER ASN THR GLU ILE LEU LYS ASP PHE LEU PRO ALA ILE SEQRES 2 B 272 ARG SER SER ASP TYR ILE MET ASP PHE GLY ASP ARG ALA SEQRES 3 B 272 PHE SER GLN ARG MET LEU LYS GLU HIS LEU ASN GLN GLY SEQRES 4 B 272 SER GLU PHE ALA SER ARG THR ILE SER GLU ILE ASP ARG SEQRES 5 B 272 GLN VAL SER PHE LEU PHE ASP LYS TYR LEU THR GLN GLY SEQRES 6 B 272 ASP LYS LEU LEU ASP LEU GLY CYS GLY PRO GLY LEU TYR SEQRES 7 B 272 THR THR ARG PHE ALA GLU LYS GLY VAL THR THR LEU GLY SEQRES 8 B 272 VAL ASP VAL SER PRO ALA ALA ILE GLU TYR ALA LYS GLU SEQRES 9 B 272 HIS ALA THR SER ALA GLU THR TYR GLN GLN ILE ASP LEU SEQRES 10 B 272 ASP LYS PHE ASP SER ASN GLU GLN PHE ASP LEU VAL LEU SEQRES 11 B 272 LEU LEU PHE GLY ILE ALA ASN ASN LEU GLU ARG LEU ASP SEQRES 12 B 272 THR LEU LEU ARG LYS LEU LYS ARG ASN LEU LYS SER GLY SEQRES 13 B 272 ALA LYS LEU VAL PHE GLU LEU MET ASP LEU GLU PHE MET SEQRES 14 B 272 LYS SER LEU GLU GLN GLY ASN GLY THR TRP VAL PHE HIS SEQRES 15 B 272 PRO GLU GLY GLY LEU LEU SER GLU GLN PRO HIS TYR GLN SEQRES 16 B 272 LEU CYS ARG ARG VAL TRP PHE GLU ASP GLN LYS THR LEU SEQRES 17 B 272 ILE ASP ARG ASN MET VAL ILE THR ASP SER ALA GLN THR SEQRES 18 B 272 SER MET TYR GLU GLY VAL PHE PHE GLY PHE GLU LEU TYR SEQRES 19 B 272 ASP PHE ASN GLN LEU LEU GLN LYS ALA GLY TYR LYS GLU SEQRES 20 B 272 ALA HIS ILE ILE CYS ARG GLN LEU GLU LYS GLY GLU LEU SEQRES 21 B 272 THR LYS HIS PHE PHE MET VAL GLU THR GLU LEU ALA HET SAH A 301 26 HET MG A 302 1 HET MG A 303 1 HET MG A 304 1 HET CL A 305 1 HET CL A 306 1 HET NA A 307 1 HET NA A 308 1 HET GOL A 309 6 HET GOL A 310 6 HET GOL A 311 6 HET GOL A 312 6 HET GOL A 313 6 HET SAH B 301 26 HET MG B 302 1 HET MG B 303 1 HET CL B 304 1 HET CL B 305 1 HET CL B 306 1 HET NA B 307 1 HET NA B 308 1 HET GOL B 309 6 HET GOL B 310 6 HET GOL B 311 6 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 4 MG 5(MG 2+) FORMUL 7 CL 5(CL 1-) FORMUL 9 NA 4(NA 1+) FORMUL 11 GOL 8(C3 H8 O3) FORMUL 27 HOH *411(H2 O) HELIX 1 AA1 SER A 1 PHE A 9 1 9 HELIX 2 AA2 ASP A 24 ASN A 37 1 14 HELIX 3 AA3 THR A 46 LEU A 62 1 17 HELIX 4 AA4 GLY A 76 LYS A 85 1 10 HELIX 5 AA5 SER A 95 HIS A 105 1 11 HELIX 6 AA6 ASP A 116 PHE A 120 5 5 HELIX 7 AA7 GLY A 134 ASN A 138 5 5 HELIX 8 AA8 ARG A 141 LYS A 150 1 10 HELIX 9 AA9 ASP A 165 LEU A 172 1 8 HELIX 10 AB1 GLU A 173 ASN A 176 5 4 HELIX 11 AB2 GLU A 232 GLY A 244 1 13 HELIX 12 AB3 LEU A 260 LYS A 262 5 3 HELIX 13 AB4 ASN B 2 PHE B 9 1 8 HELIX 14 AB5 ASP B 24 ASN B 37 1 14 HELIX 15 AB6 THR B 46 LEU B 62 1 17 HELIX 16 AB7 GLY B 76 LYS B 85 1 10 HELIX 17 AB8 SER B 95 HIS B 105 1 11 HELIX 18 AB9 ASP B 116 PHE B 120 5 5 HELIX 19 AC1 GLY B 134 ASN B 138 5 5 HELIX 20 AC2 ARG B 141 LYS B 150 1 10 HELIX 21 AC3 ASP B 165 LEU B 172 1 8 HELIX 22 AC4 GLU B 173 ASN B 176 5 4 HELIX 23 AC5 GLU B 232 GLY B 244 1 13 HELIX 24 AC6 LEU B 260 LYS B 262 5 3 SHEET 1 AA1 7 GLU A 110 GLN A 114 0 SHEET 2 AA1 7 THR A 88 ASP A 93 1 N GLY A 91 O GLN A 113 SHEET 3 AA1 7 LYS A 67 LEU A 71 1 N LEU A 68 O THR A 88 SHEET 4 AA1 7 PHE A 126 LEU A 131 1 O LEU A 130 N LEU A 71 SHEET 5 AA1 7 LEU A 153 MET A 164 1 O VAL A 160 N VAL A 129 SHEET 6 AA1 7 PHE A 264 THR A 269 -1 O PHE A 265 N LEU A 163 SHEET 7 AA1 7 HIS A 249 ILE A 250 -1 N HIS A 249 O GLU A 268 SHEET 1 AA2 4 THR A 178 HIS A 182 0 SHEET 2 AA2 4 HIS A 193 PHE A 202 -1 O HIS A 193 N HIS A 182 SHEET 3 AA2 4 THR A 207 THR A 216 -1 O ARG A 211 N ARG A 198 SHEET 4 AA2 4 THR A 221 PHE A 229 -1 O GLY A 226 N ASP A 210 SHEET 1 AA3 7 GLU B 110 GLN B 114 0 SHEET 2 AA3 7 THR B 88 ASP B 93 1 N GLY B 91 O GLN B 113 SHEET 3 AA3 7 LYS B 67 LEU B 71 1 N ASP B 70 O LEU B 90 SHEET 4 AA3 7 PHE B 126 LEU B 131 1 O LEU B 130 N LEU B 71 SHEET 5 AA3 7 LEU B 153 MET B 164 1 O LYS B 154 N PHE B 126 SHEET 6 AA3 7 PHE B 264 THR B 269 -1 O PHE B 265 N LEU B 163 SHEET 7 AA3 7 HIS B 249 ILE B 250 -1 N HIS B 249 O GLU B 268 SHEET 1 AA4 4 THR B 178 HIS B 182 0 SHEET 2 AA4 4 HIS B 193 PHE B 202 -1 O HIS B 193 N HIS B 182 SHEET 3 AA4 4 THR B 207 THR B 216 -1 O ARG B 211 N ARG B 198 SHEET 4 AA4 4 THR B 221 PHE B 229 -1 O GLY B 226 N ASP B 210 LINK OG BSER A 15 MG MG A 303 1555 1555 2.05 LINK OE2 GLU A 104 MG MG A 302 1555 1555 2.02 LINK OE1 GLU A 225 MG MG A 303 1555 1555 2.57 LINK O GLU A 247 NA NA A 307 1555 1555 2.77 LINK NE2 HIS A 249 MG MG A 304 1555 1555 2.90 LINK OE2 GLU A 268 MG MG A 304 1555 1555 2.71 LINK O ALA A 272 NA NA A 308 1555 1555 2.68 LINK MG MG A 302 O HOH A 418 1555 1555 2.05 LINK MG MG A 302 O HOH A 456 1555 1555 1.99 LINK MG MG A 302 O HOH A 498 1555 1555 2.10 LINK MG MG A 302 O HOH B 432 1555 1555 2.23 LINK MG MG A 302 O HOH B 459 1555 1555 2.05 LINK MG MG A 304 O1 GOL A 312 1555 1555 2.15 LINK MG MG A 304 O HOH A 516 1555 1555 2.22 LINK NA NA A 307 O HOH A 453 1555 1555 2.97 LINK NA NA A 308 O HOH A 444 1555 1555 2.31 LINK NA NA A 308 O HOH B 511 1555 1565 3.13 LINK NA NA A 308 O HOH B 518 1555 1565 3.04 LINK O HOH A 439 MG MG B 302 1645 1555 2.05 LINK O HOH A 474 MG MG B 302 1645 1555 2.21 LINK O HOH A 521 NA NA B 308 1545 1555 3.19 LINK O HOH A 525 NA NA B 308 1545 1555 3.06 LINK OG BSER B 15 MG MG B 303 1555 1555 2.00 LINK OD1 ASP B 70 NA NA B 307 1555 1555 3.11 LINK OD2 ASP B 70 NA NA B 307 1555 1555 2.55 LINK OE2 GLU B 104 MG MG B 302 1555 1555 2.03 LINK OE1 GLU B 225 MG MG B 303 1555 1555 2.66 LINK O ALA B 272 NA NA B 308 1555 1555 2.72 LINK MG MG B 302 O HOH B 415 1555 1555 2.07 LINK MG MG B 302 O HOH B 442 1555 1555 2.03 LINK MG MG B 302 O HOH B 472 1555 1555 2.05 LINK NA NA B 308 O HOH B 469 1555 1555 2.32 CRYST1 47.470 47.590 85.410 80.45 80.16 73.38 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021066 -0.006288 -0.002898 0.00000 SCALE2 0.000000 0.021929 -0.002740 0.00000 SCALE3 0.000000 0.000000 0.011976 0.00000 CONECT 125 4447 CONECT 790 4446 CONECT 1815 4447 CONECT 1997 4451 CONECT 2017 4448 CONECT 2178 4448 CONECT 2206 4452 CONECT 2334 4510 CONECT 2751 4514 CONECT 2752 4514 CONECT 2998 4509 CONECT 4025 4510 CONECT 4416 4515 CONECT 4420 4421 CONECT 4421 4420 4422 4425 CONECT 4422 4421 4423 CONECT 4423 4422 4424 CONECT 4424 4423 4428 CONECT 4425 4421 4426 4427 CONECT 4426 4425 CONECT 4427 4425 CONECT 4428 4424 4429 CONECT 4429 4428 4430 4431 CONECT 4430 4429 4435 CONECT 4431 4429 4432 4433 CONECT 4432 4431 CONECT 4433 4431 4434 4435 CONECT 4434 4433 CONECT 4435 4430 4433 4436 CONECT 4436 4435 4437 4445 CONECT 4437 4436 4438 CONECT 4438 4437 4439 CONECT 4439 4438 4440 4445 CONECT 4440 4439 4441 4442 CONECT 4441 4440 CONECT 4442 4440 4443 CONECT 4443 4442 4444 CONECT 4444 4443 4445 CONECT 4445 4436 4439 4444 CONECT 4446 790 4551 4589 4631 CONECT 4446 4771 4798 CONECT 4447 125 1815 CONECT 4448 2017 2178 4472 4649 CONECT 4451 1997 4586 CONECT 4452 2206 4577 CONECT 4453 4454 4455 CONECT 4454 4453 CONECT 4455 4453 4456 4457 CONECT 4456 4455 CONECT 4457 4455 4458 CONECT 4458 4457 CONECT 4459 4460 4461 CONECT 4460 4459 CONECT 4461 4459 4462 4463 CONECT 4462 4461 CONECT 4463 4461 4464 CONECT 4464 4463 CONECT 4465 4466 4467 CONECT 4466 4465 CONECT 4467 4465 4468 4469 CONECT 4468 4467 CONECT 4469 4467 4470 CONECT 4470 4469 CONECT 4471 4472 4473 CONECT 4472 4448 4471 CONECT 4473 4471 4474 4475 CONECT 4474 4473 CONECT 4475 4473 4476 CONECT 4476 4475 CONECT 4477 4478 4479 CONECT 4478 4477 CONECT 4479 4477 4480 4481 CONECT 4480 4479 CONECT 4481 4479 4482 CONECT 4482 4481 CONECT 4483 4484 CONECT 4484 4483 4485 4488 CONECT 4485 4484 4486 CONECT 4486 4485 4487 CONECT 4487 4486 4491 CONECT 4488 4484 4489 4490 CONECT 4489 4488 CONECT 4490 4488 CONECT 4491 4487 4492 CONECT 4492 4491 4493 4494 CONECT 4493 4492 4498 CONECT 4494 4492 4495 4496 CONECT 4495 4494 CONECT 4496 4494 4497 4498 CONECT 4497 4496 CONECT 4498 4493 4496 4499 CONECT 4499 4498 4500 4508 CONECT 4500 4499 4501 CONECT 4501 4500 4502 CONECT 4502 4501 4503 4508 CONECT 4503 4502 4504 4505 CONECT 4504 4503 CONECT 4505 4503 4506 CONECT 4506 4505 4507 CONECT 4507 4506 4508 CONECT 4508 4499 4502 4507 CONECT 4509 2998 4754 4781 4811 CONECT 4510 2334 4025 CONECT 4514 2751 2752 CONECT 4515 4416 4808 CONECT 4516 4517 4518 CONECT 4517 4516 CONECT 4518 4516 4519 4520 CONECT 4519 4518 CONECT 4520 4518 4521 CONECT 4521 4520 CONECT 4522 4523 4524 CONECT 4523 4522 CONECT 4524 4522 4525 4526 CONECT 4525 4524 CONECT 4526 4524 4527 CONECT 4527 4526 CONECT 4528 4529 4530 CONECT 4529 4528 CONECT 4530 4528 4531 4532 CONECT 4531 4530 CONECT 4532 4530 4533 CONECT 4533 4532 CONECT 4551 4446 CONECT 4577 4452 CONECT 4586 4451 CONECT 4589 4446 CONECT 4631 4446 CONECT 4649 4448 CONECT 4754 4509 CONECT 4771 4446 CONECT 4781 4509 CONECT 4798 4446 CONECT 4808 4515 CONECT 4811 4509 MASTER 388 0 24 24 22 0 0 6 4833 2 135 42 END