HEADER OXIDOREDUCTASE 01-JUL-25 9RSZ TITLE CRYSTAL STRUCTURE OF AMBORELLA TRICHOPODA ACCO2 IN COMPLEX WITH FE AND TITLE 2 ACC COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOCYCLOPROPANECARBOXYLATE OXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.17.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMBORELLA TRICHOPODA; SOURCE 3 ORGANISM_TAXID: 13333; SOURCE 4 GENE: AMTR_S00112P00098670; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_ATCC_NUMBER: BAA-1025-B2 KEYWDS AMINOCYCLOPROPANECARBOXYLATE ETHYLENE OXIDASE PLANT HORMONE, PLANT KEYWDS 2 PROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.ZHANG,C.J.SCHOFIELD REVDAT 1 15-JUL-26 9RSZ 0 JRNL AUTH Z.ZHANG,C.J.SCHOFIELD JRNL TITL STRUCTURES AND MECHANISMS OF AMBORELLA ACC OXIDASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 38999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1953 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.0500 - 3.8600 0.99 2833 146 0.1573 0.1693 REMARK 3 2 3.8500 - 3.0600 1.00 2699 159 0.1515 0.1787 REMARK 3 3 3.0600 - 2.6700 1.00 2674 151 0.1701 0.1950 REMARK 3 4 2.6700 - 2.4300 1.00 2639 144 0.1574 0.1955 REMARK 3 5 2.4300 - 2.2500 0.99 2647 147 0.1533 0.1562 REMARK 3 6 2.2500 - 2.1200 1.00 2661 128 0.1592 0.2209 REMARK 3 7 2.1200 - 2.0200 1.00 2610 141 0.1840 0.2323 REMARK 3 8 2.0200 - 1.9300 1.00 2636 135 0.1719 0.2239 REMARK 3 9 1.9300 - 1.8500 1.00 2644 143 0.1852 0.2337 REMARK 3 10 1.8500 - 1.7900 1.00 2604 126 0.2200 0.2575 REMARK 3 11 1.7900 - 1.7300 1.00 2623 129 0.2538 0.2912 REMARK 3 12 1.7300 - 1.6800 1.00 2589 144 0.2982 0.3136 REMARK 3 13 1.6800 - 1.6400 0.98 2584 139 0.3020 0.3385 REMARK 3 14 1.6400 - 1.6000 0.99 2603 121 0.3157 0.3270 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.195 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.463 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2565 REMARK 3 ANGLE : 0.888 3466 REMARK 3 CHIRALITY : 0.086 370 REMARK 3 PLANARITY : 0.008 447 REMARK 3 DIHEDRAL : 14.481 990 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3717 3.5984 1.8641 REMARK 3 T TENSOR REMARK 3 T11: 0.3985 T22: 0.2730 REMARK 3 T33: 0.1915 T12: -0.0561 REMARK 3 T13: 0.0329 T23: -0.0480 REMARK 3 L TENSOR REMARK 3 L11: 1.4508 L22: 3.3944 REMARK 3 L33: 2.4265 L12: -0.4358 REMARK 3 L13: 0.3086 L23: -0.2175 REMARK 3 S TENSOR REMARK 3 S11: 0.1121 S12: -0.5362 S13: 0.3015 REMARK 3 S21: 0.8025 S22: -0.0973 S23: 0.2374 REMARK 3 S31: -0.4758 S32: 0.0009 S33: 0.0135 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5942 -21.3878 -15.6264 REMARK 3 T TENSOR REMARK 3 T11: 0.2086 T22: 0.2160 REMARK 3 T33: 0.2932 T12: 0.0053 REMARK 3 T13: -0.0556 T23: -0.0353 REMARK 3 L TENSOR REMARK 3 L11: 5.2032 L22: 3.2868 REMARK 3 L33: 3.4291 L12: -0.3630 REMARK 3 L13: -3.7192 L23: 1.6234 REMARK 3 S TENSOR REMARK 3 S11: -0.0764 S12: 0.4148 S13: -0.5996 REMARK 3 S21: -0.0482 S22: 0.0592 S23: -0.2400 REMARK 3 S31: 0.4298 S32: -0.0737 S33: 0.0446 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5734 -15.1591 -21.1336 REMARK 3 T TENSOR REMARK 3 T11: 0.1955 T22: 0.2193 REMARK 3 T33: 0.1391 T12: 0.0106 REMARK 3 T13: -0.0411 T23: -0.0248 REMARK 3 L TENSOR REMARK 3 L11: 3.0617 L22: 3.4328 REMARK 3 L33: 2.3563 L12: -0.7258 REMARK 3 L13: -0.3288 L23: 0.5677 REMARK 3 S TENSOR REMARK 3 S11: 0.0093 S12: 0.5663 S13: -0.1014 REMARK 3 S21: -0.2518 S22: 0.0456 S23: 0.0227 REMARK 3 S31: 0.1275 S32: 0.0322 S33: 0.0074 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 108 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8539 -8.1331 -5.4880 REMARK 3 T TENSOR REMARK 3 T11: 0.1823 T22: 0.2354 REMARK 3 T33: 0.1648 T12: -0.0400 REMARK 3 T13: 0.0190 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 1.9682 L22: 9.5854 REMARK 3 L33: 2.9098 L12: -1.1317 REMARK 3 L13: -0.5894 L23: 2.2995 REMARK 3 S TENSOR REMARK 3 S11: 0.0180 S12: -0.1927 S13: -0.1463 REMARK 3 S21: 0.5459 S22: -0.0739 S23: 0.5226 REMARK 3 S31: 0.1625 S32: -0.1824 S33: 0.0593 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 137 THROUGH 267 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9548 -1.1826 -13.2552 REMARK 3 T TENSOR REMARK 3 T11: 0.1541 T22: 0.1385 REMARK 3 T33: 0.1086 T12: -0.0212 REMARK 3 T13: 0.0043 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 2.1898 L22: 1.5687 REMARK 3 L33: 1.3655 L12: -0.2353 REMARK 3 L13: 0.1819 L23: -0.3638 REMARK 3 S TENSOR REMARK 3 S11: 0.0422 S12: 0.0209 S13: 0.1150 REMARK 3 S21: 0.1292 S22: -0.0367 S23: 0.0270 REMARK 3 S31: -0.1066 S32: -0.0002 S33: -0.0157 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 268 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8867 7.9544 -23.5242 REMARK 3 T TENSOR REMARK 3 T11: 0.2298 T22: 0.2760 REMARK 3 T33: 0.2011 T12: -0.0152 REMARK 3 T13: 0.0057 T23: 0.0649 REMARK 3 L TENSOR REMARK 3 L11: 4.0961 L22: 3.8793 REMARK 3 L33: 2.8713 L12: -0.8117 REMARK 3 L13: -0.1090 L23: -0.4308 REMARK 3 S TENSOR REMARK 3 S11: 0.1703 S12: 0.3356 S13: 0.2745 REMARK 3 S21: -0.0958 S22: 0.0174 S23: -0.0564 REMARK 3 S31: -0.2644 S32: 0.0375 S33: -0.1595 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 295 THROUGH 311 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2711 12.1517 -28.6443 REMARK 3 T TENSOR REMARK 3 T11: 0.2491 T22: 0.2773 REMARK 3 T33: 0.2573 T12: 0.0077 REMARK 3 T13: 0.0130 T23: 0.0521 REMARK 3 L TENSOR REMARK 3 L11: 4.0157 L22: 2.9041 REMARK 3 L33: 5.9069 L12: -1.5795 REMARK 3 L13: 4.8468 L23: -2.1662 REMARK 3 S TENSOR REMARK 3 S11: -0.3842 S12: -0.3609 S13: 0.2931 REMARK 3 S21: 0.2321 S22: 0.2839 S23: 0.1728 REMARK 3 S31: -0.2617 S32: -0.3362 S33: 0.1589 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9RSZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1292148939. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97628 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39112 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 52.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.17100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: GOLD BAR SHAPED IN VARIOUS SIZES. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CHES PH9.5, 25% PEG 3350, REMARK 280 MICROSEEDING., EVAPORATION, TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.78100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.59050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.30900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.59050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.78100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.30900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 78 REMARK 465 GLU A 79 REMARK 465 GLU A 80 REMARK 465 ILE A 312 REMARK 465 ALA A 313 REMARK 465 THR A 314 REMARK 465 ALA A 315 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 590 O HOH A 599 1.68 REMARK 500 O HOH A 633 O HOH A 673 1.80 REMARK 500 O HOH A 685 O HOH A 691 1.97 REMARK 500 OG SER A 97 O HOH A 501 2.01 REMARK 500 O HOH A 655 O HOH A 686 2.06 REMARK 500 O HOH A 644 O HOH A 664 2.07 REMARK 500 O HOH A 505 O HOH A 658 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH22 ARG A 65 OE2 GLU A 280 3544 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 76 63.00 -101.49 REMARK 500 ASP A 105 -8.20 78.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 401 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 178 NE2 REMARK 620 2 ASP A 180 OD1 90.7 REMARK 620 3 HIS A 235 NE2 87.4 93.4 REMARK 620 4 1AC A 402 O 90.5 174.5 92.1 REMARK 620 5 1AC A 402 N 170.9 98.4 93.2 80.4 REMARK 620 6 HOH A 642 O 90.9 88.2 177.7 86.4 88.2 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9QIF RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH THE SAME SUBSTRATE BUT DIFFERNT METAL DBREF 9RSZ A 22 315 UNP W1NXW4 W1NXW4_AMBTC 1 294 SEQADV 9RSZ MET A 1 UNP W1NXW4 INITIATING METHIONINE SEQADV 9RSZ GLY A 2 UNP W1NXW4 EXPRESSION TAG SEQADV 9RSZ PHE A 3 UNP W1NXW4 EXPRESSION TAG SEQADV 9RSZ SER A 4 UNP W1NXW4 EXPRESSION TAG SEQADV 9RSZ PHE A 5 UNP W1NXW4 EXPRESSION TAG SEQADV 9RSZ PRO A 6 UNP W1NXW4 EXPRESSION TAG SEQADV 9RSZ VAL A 7 UNP W1NXW4 EXPRESSION TAG SEQADV 9RSZ VAL A 8 UNP W1NXW4 EXPRESSION TAG SEQADV 9RSZ ASP A 9 UNP W1NXW4 EXPRESSION TAG SEQADV 9RSZ LEU A 10 UNP W1NXW4 EXPRESSION TAG SEQADV 9RSZ GLN A 11 UNP W1NXW4 EXPRESSION TAG SEQADV 9RSZ GLU A 12 UNP W1NXW4 EXPRESSION TAG SEQADV 9RSZ LEU A 13 UNP W1NXW4 EXPRESSION TAG SEQADV 9RSZ GLU A 14 UNP W1NXW4 EXPRESSION TAG SEQADV 9RSZ GLY A 15 UNP W1NXW4 EXPRESSION TAG SEQADV 9RSZ GLY A 16 UNP W1NXW4 EXPRESSION TAG SEQADV 9RSZ GLU A 17 UNP W1NXW4 EXPRESSION TAG SEQADV 9RSZ ARG A 18 UNP W1NXW4 EXPRESSION TAG SEQADV 9RSZ LYS A 19 UNP W1NXW4 EXPRESSION TAG SEQADV 9RSZ SER A 20 UNP W1NXW4 EXPRESSION TAG SEQADV 9RSZ ALA A 21 UNP W1NXW4 EXPRESSION TAG SEQRES 1 A 315 MET GLY PHE SER PHE PRO VAL VAL ASP LEU GLN GLU LEU SEQRES 2 A 315 GLU GLY GLY GLU ARG LYS SER ALA MET GLU LEU ILE ASN SEQRES 3 A 315 ASP ALA CYS GLU ASN TRP GLY PHE PHE GLU VAL VAL ASN SEQRES 4 A 315 HIS GLY LEU SER GLN GLU PHE MET ASP GLN VAL GLU SER SEQRES 5 A 315 LEU THR LYS GLU HIS TYR ARG LYS TYR MET GLU LYS ARG SEQRES 6 A 315 PHE LYS ASP GLU VAL ALA GLU ARG VAL LEU LYS LYS GLU SEQRES 7 A 315 GLU GLU VAL LYS ASP LEU ASP TRP GLU SER THR PHE TYR SEQRES 8 A 315 LEU ARG HIS LEU PRO SER SER ASN ILE SER GLU ILE PRO SEQRES 9 A 315 ASP LEU ASP HIS GLU TYR ARG ARG VAL MET LYS GLU PHE SEQRES 10 A 315 ALA GLY VAL ILE GLU LYS LEU ALA GLU LYS LEU LEU ASP SEQRES 11 A 315 VAL LEU CYS GLU ASN LEU GLY LEU GLU LYS GLY TYR LEU SEQRES 12 A 315 LYS LYS ALA PHE GLN GLY LYS ASN GLY TYR PRO THR PHE SEQRES 13 A 315 GLY THR LYS VAL SER SER TYR PRO PRO CYS PRO ARG PRO SEQRES 14 A 315 GLU LEU VAL LYS GLY LEU ARG ALA HIS THR ASP ALA GLY SEQRES 15 A 315 GLY LEU VAL LEU LEU PHE GLN ASP PRO GLN VAL SER GLY SEQRES 16 A 315 LEU GLN LEU LEU LYS ASP GLY GLU TRP VAL ASP VAL PRO SEQRES 17 A 315 PRO LEU ARG HIS SER ILE VAL ILE ASN ILE GLY ASP GLN SEQRES 18 A 315 LEU GLU VAL ILE THR ASN GLY ARG TYR LYS SER VAL MET SEQRES 19 A 315 HIS ARG VAL VAL ALA GLN THR ASN GLY ASN ARG MET SER SEQRES 20 A 315 ILE ALA SER PHE TYR ASN PRO GLY SER ASP ALA VAL ILE SEQRES 21 A 315 PHE PRO ALA PRO THR LEU LEU LYS LYS GLU THR ALA GLU SEQRES 22 A 315 TYR PRO LYS PHE VAL PHE GLU ASP TYR MET LYS LEU TYR SEQRES 23 A 315 VAL GLY GLN LYS PHE GLN ALA LYS GLU PRO ARG PHE GLU SEQRES 24 A 315 THR MET LYS ALA MET GLU THR VAL SER LEU GLY PRO ILE SEQRES 25 A 315 ALA THR ALA HET CO A 401 1 HET 1AC A 402 13 HET NHE A 403 29 HETNAM CO COBALT (II) ION HETNAM 1AC 1-AMINOCYCLOPROPANECARBOXYLIC ACID HETNAM NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID HETSYN NHE N-CYCLOHEXYLTAURINE; CHES FORMUL 2 CO CO 2+ FORMUL 3 1AC C4 H7 N O2 FORMUL 4 NHE C8 H17 N O3 S FORMUL 5 HOH *193(H2 O) HELIX 1 AA1 GLN A 11 GLY A 15 5 5 HELIX 2 AA2 GLU A 17 TRP A 32 1 16 HELIX 3 AA3 SER A 43 LYS A 76 1 34 HELIX 4 AA4 ASP A 107 GLY A 137 1 31 HELIX 5 AA5 GLY A 141 PHE A 147 1 7 HELIX 6 AA6 GLY A 219 THR A 226 1 8 HELIX 7 AA7 ALA A 263 LYS A 268 5 6 HELIX 8 AA8 PHE A 279 LYS A 290 1 12 HELIX 9 AA9 LYS A 294 GLU A 305 1 12 HELIX 10 AB1 THR A 306 SER A 308 5 3 SHEET 1 AA1 7 VAL A 7 ASP A 9 0 SHEET 2 AA1 7 PHE A 34 VAL A 38 1 O GLU A 36 N VAL A 8 SHEET 3 AA1 7 ILE A 214 ILE A 218 -1 O ILE A 216 N PHE A 35 SHEET 4 AA1 7 LEU A 184 GLN A 189 -1 N LEU A 187 O VAL A 215 SHEET 5 AA1 7 ARG A 245 ASN A 253 -1 O TYR A 252 N LEU A 184 SHEET 6 AA1 7 THR A 155 TYR A 163 -1 N THR A 155 O ASN A 253 SHEET 7 AA1 7 SER A 88 LEU A 95 -1 N PHE A 90 O VAL A 160 SHEET 1 AA2 4 LEU A 175 HIS A 178 0 SHEET 2 AA2 4 HIS A 235 VAL A 237 -1 O VAL A 237 N LEU A 175 SHEET 3 AA2 4 LEU A 196 LYS A 200 -1 N GLN A 197 O ARG A 236 SHEET 4 AA2 4 GLU A 203 ASP A 206 -1 O VAL A 205 N LEU A 198 SHEET 1 AA3 2 VAL A 259 ILE A 260 0 SHEET 2 AA3 2 PHE A 277 VAL A 278 -1 O PHE A 277 N ILE A 260 LINK NE2 HIS A 178 CO CO A 401 1555 1555 2.10 LINK OD1 ASP A 180 CO CO A 401 1555 1555 2.09 LINK NE2 HIS A 235 CO CO A 401 1555 1555 2.13 LINK CO CO A 401 O 1AC A 402 1555 1555 2.03 LINK CO CO A 401 N 1AC A 402 1555 1555 2.11 LINK CO CO A 401 O HOH A 642 1555 1555 2.29 CISPEP 1 LEU A 95 PRO A 96 0 7.18 CRYST1 43.562 58.618 113.181 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022956 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017060 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008835 0.00000 CONECT 2838 4965 CONECT 2866 4965 CONECT 3733 4965 CONECT 4965 2838 2866 3733 4971 CONECT 4965 4972 5149 CONECT 4966 4967 4968 4974 4975 CONECT 4967 4966 4968 4976 4977 CONECT 4968 4966 4967 4969 4972 CONECT 4969 4968 4970 4971 CONECT 4970 4969 CONECT 4971 4965 4969 CONECT 4972 4965 4968 4973 4978 CONECT 4973 4972 CONECT 4974 4966 CONECT 4975 4966 CONECT 4976 4967 CONECT 4977 4967 CONECT 4978 4972 CONECT 4979 4980 4991 4992 4993 CONECT 4980 4979 4981 4994 4995 CONECT 4981 4980 4982 4983 4996 CONECT 4982 4981 4990 4997 4998 CONECT 4983 4981 4984 4999 CONECT 4984 4983 4985 5000 5001 CONECT 4985 4984 4986 5002 5003 CONECT 4986 4985 4987 4988 4989 CONECT 4987 4986 CONECT 4988 4986 CONECT 4989 4986 CONECT 4990 4982 4991 5004 5005 CONECT 4991 4979 4990 5006 5007 CONECT 4992 4979 CONECT 4993 4979 CONECT 4994 4980 CONECT 4995 4980 CONECT 4996 4981 CONECT 4997 4982 CONECT 4998 4982 CONECT 4999 4983 CONECT 5000 4984 CONECT 5001 4984 CONECT 5002 4985 CONECT 5003 4985 CONECT 5004 4990 CONECT 5005 4990 CONECT 5006 4991 CONECT 5007 4991 CONECT 5149 4965 MASTER 398 0 3 10 13 0 0 6 2682 1 48 25 END