HEADER HYDROLASE 08-JUL-25 9RVF TITLE STRUCTURE OF BGLA9 FROM ANOXYBACILLUS AYDERENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCOSIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.21; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: CYS86 IS IN THE SULFONATED FORM SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANOXYBACILLUS AYDERENSIS; SOURCE 3 ORGANISM_TAXID: 265546; SOURCE 4 GENE: JV16_01116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLUCOSYL HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR U.RAHMAN,J.RAFFERTY,S.KHAN,N.S.ZADA REVDAT 1 22-JUL-26 9RVF 0 JRNL AUTH U.RAHMAN,S.KHAN JRNL TITL STRUCTURAL INSIGHTS INTO NOVEL GLUCOSE-TOLERANT BGLA9 REVEAL JRNL TITL 2 KEY DETERMINANTS FOR STEVIOSIDE BETA-1,2 GLYCOSIDIC BOND JRNL TITL 3 CLEAVAGE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 61784 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM SELECTION REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.389 REMARK 3 FREE R VALUE TEST SET COUNT : 2094 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2750 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 57.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.4000 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.4000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3716 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 253 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.44000 REMARK 3 B22 (A**2) : -0.83600 REMARK 3 B33 (A**2) : 0.39600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.088 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.472 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3831 ; 0.015 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3465 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5202 ; 2.239 ; 1.821 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7975 ; 0.797 ; 1.771 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 451 ; 6.751 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 18 ; 9.593 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 616 ;14.527 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 528 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4570 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 942 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 746 ; 0.242 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 23 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1872 ; 0.195 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 213 ; 0.142 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 6 ; 0.337 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1807 ; 1.913 ; 1.682 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1807 ; 1.910 ; 1.682 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2257 ; 2.365 ; 3.008 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2258 ; 2.364 ; 3.010 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2024 ; 3.520 ; 2.028 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2025 ; 3.519 ; 2.029 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2945 ; 5.122 ; 3.544 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2946 ; 5.121 ; 3.544 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Ap 1 Ap 452 REMARK 3 ORIGIN FOR THE GROUP (A): 11.2921 19.9490 20.5159 REMARK 3 T TENSOR REMARK 3 T11: 0.0805 T22: 0.0165 REMARK 3 T33: 0.0850 T12: -0.0076 REMARK 3 T13: -0.0245 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 0.8739 L22: 1.0673 REMARK 3 L33: 1.5835 L12: -0.0813 REMARK 3 L13: -0.0476 L23: -0.0969 REMARK 3 S TENSOR REMARK 3 S11: -0.0269 S12: -0.0478 S13: -0.0449 REMARK 3 S21: 0.1567 S22: -0.0345 S23: -0.1176 REMARK 3 S31: 0.0051 S32: 0.1375 S33: 0.0615 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9RVF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1292149136. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-SEP-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61852 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 51.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 56.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 1.83200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20%W/V PEG4000, 20%V/V 2-PROPANOL, 0.1 REMARK 280 M NA CITRATE PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.04400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.05150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.36650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.05150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.04400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.36650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 453 REMARK 465 LYS A 454 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H TRP A 133 HH TYR A 174 1.34 REMARK 500 CB THR A 25 O HOH A 1001 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 62 CD GLU A 62 OE2 0.066 REMARK 500 HIS A 120 CG HIS A 120 CD2 0.056 REMARK 500 GLU A 216 CD GLU A 216 OE2 -0.082 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 39 CD - NE - CZ ANGL. DEV. = 9.5 DEGREES REMARK 500 LEU A 72 CB - CG - CD1 ANGL. DEV. = -11.4 DEGREES REMARK 500 ARG A 76 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 GLU A 216 OE1 - CD - OE2 ANGL. DEV. = -8.0 DEGREES REMARK 500 ARG A 241 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 375 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 380 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 417 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASN A 452 CB - CA - C ANGL. DEV. = 13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 53 -122.49 51.18 REMARK 500 TRP A 121 -19.62 100.10 REMARK 500 GLU A 165 70.92 54.51 REMARK 500 ASP A 214 -2.11 71.11 REMARK 500 ASN A 248 -62.87 -105.13 REMARK 500 ASP A 274 68.57 -112.65 REMARK 500 TYR A 296 -38.89 -130.53 REMARK 500 GLU A 409 58.57 -90.71 REMARK 500 TRP A 410 -129.11 53.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 363 0.08 SIDE CHAIN REMARK 500 ARG A 388 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 902 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 OCS A 86 O REMARK 620 2 THR A 88 O 91.3 REMARK 620 3 LYS A 91 O 94.4 96.3 REMARK 620 4 HOH A1026 O 155.2 113.5 83.0 REMARK 620 5 HOH A1209 O 75.5 161.3 72.1 80.3 REMARK 620 6 HOH A1232 O 96.2 95.0 164.3 82.4 99.5 REMARK 620 N 1 2 3 4 5 DBREF1 9RVF A 1 454 UNP A0A0D0G9C2_9BACL DBREF2 9RVF A A0A0D0G9C2 1 453 SEQADV 9RVF VAL A 2 UNP A0A0D0G9C INSERTION SEQRES 1 A 454 MET VAL LEU GLN PHE PRO LYS ASP PHE ILE TRP GLY ALA SEQRES 2 A 454 ALA THR SER SER TYR GLN ILE GLU GLY THR ALA THR GLY SEQRES 3 A 454 GLU ASP LYS ILE TYR SER ILE TRP ASP HIS PHE SER ARG SEQRES 4 A 454 ILE PRO GLY LYS VAL ALA ASN GLY ASP ASN GLY ASP ILE SEQRES 5 A 454 ALA ILE ASP HIS TYR ASN ARG TYR VAL GLU ASP ILE ALA SEQRES 6 A 454 LEU MET LYS ALA LEU HIS LEU LYS ALA TYR ARG PHE SER SEQRES 7 A 454 THR SER TRP ALA ARG LEU TYR OCS GLU THR PRO GLY LYS SEQRES 8 A 454 PHE ASN GLU LYS GLY LEU ASP PHE TYR LYS ARG LEU VAL SEQRES 9 A 454 HIS GLU LEU LEU GLU ASN GLY ILE GLU PRO MET LEU THR SEQRES 10 A 454 ILE TYR HIS TRP ASP MET PRO GLN ALA LEU GLN GLU LYS SEQRES 11 A 454 GLY GLY TRP GLU ASN ARG ASP ILE VAL HIS TYR PHE GLN SEQRES 12 A 454 GLU TYR ALA ALA PHE LEU TYR GLU ASN LEU GLY ASP VAL SEQRES 13 A 454 VAL LYS LYS TRP ILE THR HIS ASN GLU PRO TRP VAL VAL SEQRES 14 A 454 THR TYR LEU GLY TYR GLY ASN GLY GLU HIS ALA PRO GLY SEQRES 15 A 454 ILE GLN ASN PHE THR SER PHE LEU LYS ALA ALA HIS HIS SEQRES 16 A 454 VAL LEU LEU SER HIS GLY GLU ALA VAL LYS ALA PHE ARG SEQRES 17 A 454 ALA ILE GLY SER LYS ASP GLY GLU ILE GLY ILE THR LEU SEQRES 18 A 454 ASN LEU THR PRO GLY TYR ALA VAL ASP PRO LYS ASP GLU SEQRES 19 A 454 LYS ALA VAL ASP ALA ALA ARG LYS TRP ASP GLY PHE MET SEQRES 20 A 454 ASN ARG TRP PHE LEU ASP PRO VAL PHE LYS GLY GLN TYR SEQRES 21 A 454 PRO ALA ASP MET LEU GLU VAL TYR LYS ASP TYR LEU PRO SEQRES 22 A 454 ASP VAL TYR LYS GLU GLY ASP LEU GLN THR ILE GLN GLN SEQRES 23 A 454 PRO ILE ASP PHE PHE GLY PHE ASN TYR TYR SER THR ALA SEQRES 24 A 454 THR LEU LYS ASP TRP LYS THR GLY ASP ARG GLU PRO ILE SEQRES 25 A 454 VAL PHE GLU HIS VAL SER THR GLY ARG PRO VAL THR ASP SEQRES 26 A 454 MET ASN TRP GLU VAL ASN PRO ASN GLY LEU PHE ASP LEU SEQRES 27 A 454 MET VAL ARG LEU LYS LYS ASP TYR GLY ASP ILE PRO LEU SEQRES 28 A 454 TYR ILE THR GLU ASN GLY ALA ALA TYR LYS ASP ARG VAL SEQRES 29 A 454 ASN GLU GLN GLY GLU VAL GLU ASP ASP GLU ARG VAL ALA SEQRES 30 A 454 TYR ILE ARG GLU HIS LEU ILE ALA CYS HIS ARG ALA ILE SEQRES 31 A 454 GLU GLN GLY VAL ASN LEU LYS GLY TYR TYR VAL TRP SER SEQRES 32 A 454 LEU PHE ASP ASN PHE GLU TRP ALA PHE GLY TYR ASP LYS SEQRES 33 A 454 ARG PHE GLY ILE VAL TYR VAL ASP TYR GLU THR LEU GLU SEQRES 34 A 454 ARG ILE PRO LYS LYS SER ALA LEU TRP TYR LYS GLU THR SEQRES 35 A 454 ILE ILE ASN ASN GLY LEU GLN VAL ASP ASN ASP LYS MODRES 9RVF OCS A 86 CYS MODIFIED RESIDUE HET OCS A 86 14 HET EDO A 901 10 HET K A 902 1 HETNAM OCS CYSTEINESULFONIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM K POTASSIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 OCS C3 H7 N O5 S FORMUL 2 EDO C2 H6 O2 FORMUL 3 K K 1+ FORMUL 4 HOH *253(H2 O) HELIX 1 AA1 SER A 16 GLU A 21 1 6 HELIX 2 AA2 SER A 32 ARG A 39 1 8 HELIX 3 AA3 VAL A 44 ASP A 48 5 5 HELIX 4 AA4 ASP A 55 LEU A 70 1 16 HELIX 5 AA5 SER A 80 TYR A 85 1 6 HELIX 6 AA6 ASN A 93 ASN A 110 1 18 HELIX 7 AA7 PRO A 124 GLU A 129 1 6 HELIX 8 AA8 LYS A 130 ASN A 135 5 6 HELIX 9 AA9 ARG A 136 GLY A 154 1 19 HELIX 10 AB1 GLU A 165 GLY A 175 1 11 HELIX 11 AB2 ASN A 185 GLY A 211 1 27 HELIX 12 AB3 ASP A 233 ASN A 248 1 16 HELIX 13 AB4 ASN A 248 GLY A 258 1 11 HELIX 14 AB5 PRO A 261 TYR A 268 1 8 HELIX 15 AB6 LYS A 269 LEU A 272 5 4 HELIX 16 AB7 GLY A 279 GLN A 285 1 7 HELIX 17 AB8 ASN A 331 GLY A 347 1 17 HELIX 18 AB9 ASP A 372 GLN A 392 1 21 HELIX 19 AC1 GLU A 409 LYS A 416 5 8 HELIX 20 AC2 LYS A 433 ASN A 446 1 14 SHEET 1 AA1 2 VAL A 2 GLN A 4 0 SHEET 2 AA1 2 GLY A 447 GLN A 449 -1 O LEU A 448 N LEU A 3 SHEET 1 AA2 9 ILE A 10 ALA A 14 0 SHEET 2 AA2 9 ALA A 74 SER A 78 1 O ARG A 76 N ALA A 13 SHEET 3 AA2 9 GLU A 113 TYR A 119 1 O THR A 117 N PHE A 77 SHEET 4 AA2 9 LYS A 159 ASN A 164 1 O ILE A 161 N ILE A 118 SHEET 5 AA2 9 GLU A 216 ASN A 222 1 O GLY A 218 N THR A 162 SHEET 6 AA2 9 PHE A 291 ASN A 294 1 O GLY A 292 N ILE A 219 SHEET 7 AA2 9 LEU A 351 ASN A 356 1 O TYR A 352 N PHE A 291 SHEET 8 AA2 9 LEU A 396 TRP A 402 1 O LYS A 397 N LEU A 351 SHEET 9 AA2 9 ILE A 10 ALA A 14 1 N GLY A 12 O TYR A 399 SHEET 1 AA3 3 GLY A 226 ALA A 228 0 SHEET 2 AA3 3 ALA A 299 LYS A 305 1 O LEU A 301 N TYR A 227 SHEET 3 AA3 3 VAL A 313 HIS A 316 -1 O GLU A 315 N LYS A 302 SHEET 1 AA4 2 VAL A 421 VAL A 423 0 SHEET 2 AA4 2 ARG A 430 PRO A 432 -1 O ILE A 431 N TYR A 422 LINK C TYR A 85 N OCS A 86 1555 1555 1.34 LINK C OCS A 86 N GLU A 87 1555 1555 1.33 LINK O OCS A 86 K K A 902 1555 1555 2.37 LINK O THR A 88 K K A 902 1555 1555 2.45 LINK O LYS A 91 K K A 902 1555 1555 2.40 LINK K K A 902 O HOH A1026 1555 1555 2.49 LINK K K A 902 O HOH A1209 1555 1555 2.73 LINK K K A 902 O HOH A1232 1555 1555 2.41 CISPEP 1 ALA A 180 PRO A 181 0 6.33 CISPEP 2 TRP A 402 SER A 403 0 9.92 CRYST1 62.088 90.733 92.103 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016106 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011021 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010857 0.00000 CONECT 1338 1357 CONECT 1357 1338 1358 1366 CONECT 1358 1357 1359 1361 1367 CONECT 1359 1358 1360 1368 1369 CONECT 1360 1359 1363 1364 1365 CONECT 1361 1358 1362 1371 CONECT 1362 1361 7282 CONECT 1363 1360 CONECT 1364 1360 1370 CONECT 1365 1360 CONECT 1366 1357 CONECT 1367 1358 CONECT 1368 1359 CONECT 1369 1359 CONECT 1370 1364 CONECT 1371 1361 CONECT 1389 7282 CONECT 1424 7282 CONECT 7272 7273 7274 7276 7277 CONECT 7273 7272 7278 CONECT 7274 7272 7275 7279 7280 CONECT 7275 7274 7281 CONECT 7276 7272 CONECT 7277 7272 CONECT 7278 7273 CONECT 7279 7274 CONECT 7280 7274 CONECT 7281 7275 CONECT 7282 1362 1389 1424 7308 CONECT 7282 7491 7514 CONECT 7308 7282 CONECT 7491 7282 CONECT 7514 7282 MASTER 379 0 3 20 16 0 0 6 3974 1 33 35 END