HEADER RNA 08-JUL-25 9RVP TITLE PROTEIN 2A FROM THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (TMEV) BOUND TITLE 2 TO RNA PSEUDOKNOT COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: N-TERMINAL EXTENSION GSHM... IS DUE TO TEV CLEAVAGE OF COMPND 6 AN N-TERMINAL HIS6-MBP TAG. C-TERMINAL ...VEMNPG RESIDUES WERE COMPND 7 DISORDERED AND COULD NOT BE MODELLED.; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RNA PSEUDOKNOT; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: UAA IN PSEUDOKNOT LOOP 2 IS DISORDERED AND COULD NOT COMPND 13 BE MODELLED. DENSITY FOR THE 3' C WAS INSUFFICIENT FOR MODELLING. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THEILER'S ENCEPHALOMYELITIS VIRUS; SOURCE 3 ORGANISM_TAXID: 12124; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: THEILER'S ENCEPHALOMYELITIS VIRUS; SOURCE 10 ORGANISM_TAXID: 12124 KEYWDS PSEUDOKNOT, RNA-PROTEIN COMPLEX, FRAMESHIFTING, CARDIOVIRUS, RNA EXPDTA X-RAY DIFFRACTION AUTHOR J.K.BETTS,C.M.JEFFRIES,T.C.PASSCHIER,H.C.Y.KUNG,S.P.GRAHAM, AUTHOR 2 M.A.S.ABDELHAMID,J.A.L.HOWARD,T.D.CRAGGS,S.C.GRAHAM,I.BRIERLEY, AUTHOR 3 M.C.LEAKE,S.D.QUINN,C.H.HILL REVDAT 1 30-JUL-25 9RVP 0 JRNL AUTH J.K.BETTS,C.M.JEFFRIES,T.C.PASSCHIER,H.C.Y.KUNG,S.P.GRAHAM, JRNL AUTH 2 M.A.ABDELHAMID,J.A.L.HOWARD,T.D.CRAGGS,S.C.GRAHAM, JRNL AUTH 3 I.BRIERLEY,M.C.LEAKE,S.D.QUINN,C.H.HILL JRNL TITL A NEW PROTEIN-DEPENDENT RIBOSWITCH ACTIVATES RIBOSOMAL JRNL TITL 2 FRAMESHIFTING JRNL REF BIORXIV 2025 JRNL REFN ISSN 2692-8205 JRNL DOI 10.1101/2025.07.17.665365 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 19410 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.610 REMARK 3 FREE R VALUE TEST SET COUNT : 894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.2500 - 3.4500 0.99 3211 125 0.1425 0.1542 REMARK 3 2 3.4500 - 2.7400 0.99 3125 151 0.1605 0.2020 REMARK 3 3 2.7400 - 2.3900 0.99 3086 145 0.1964 0.2613 REMARK 3 4 2.3900 - 2.1800 0.98 3033 155 0.2463 0.2882 REMARK 3 5 2.1700 - 2.0200 0.98 3050 154 0.2912 0.3239 REMARK 3 6 2.0200 - 1.9000 0.98 3011 164 0.3242 0.3409 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.306 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.893 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1771 REMARK 3 ANGLE : 0.831 2533 REMARK 3 CHIRALITY : 0.055 299 REMARK 3 PLANARITY : 0.012 209 REMARK 3 DIHEDRAL : 13.355 739 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0615 5.1541 12.0678 REMARK 3 T TENSOR REMARK 3 T11: 0.1542 T22: 0.0773 REMARK 3 T33: 0.1281 T12: -0.0326 REMARK 3 T13: -0.0083 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 5.7754 L22: 3.8575 REMARK 3 L33: 2.7436 L12: -1.3433 REMARK 3 L13: 0.2482 L23: 0.7894 REMARK 3 S TENSOR REMARK 3 S11: 0.0947 S12: 0.0400 S13: 0.0884 REMARK 3 S21: -0.0512 S22: -0.2246 S23: 0.2306 REMARK 3 S31: -0.1902 S32: -0.1694 S33: 0.1180 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0286 6.5069 23.4986 REMARK 3 T TENSOR REMARK 3 T11: 0.1969 T22: 0.1266 REMARK 3 T33: 0.1271 T12: -0.0017 REMARK 3 T13: -0.0085 T23: -0.0192 REMARK 3 L TENSOR REMARK 3 L11: 2.5320 L22: 4.9865 REMARK 3 L33: 2.4857 L12: -0.9818 REMARK 3 L13: 0.4818 L23: -1.9205 REMARK 3 S TENSOR REMARK 3 S11: -0.0753 S12: -0.2711 S13: 0.0869 REMARK 3 S21: 0.6224 S22: 0.0194 S23: -0.1183 REMARK 3 S31: -0.2654 S32: 0.1026 S33: 0.0180 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7586 -6.4526 13.8222 REMARK 3 T TENSOR REMARK 3 T11: 0.1972 T22: 0.0934 REMARK 3 T33: 0.1360 T12: 0.0054 REMARK 3 T13: -0.0030 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 4.0413 L22: 1.3229 REMARK 3 L33: 6.0739 L12: -0.1983 REMARK 3 L13: 2.5573 L23: -0.5290 REMARK 3 S TENSOR REMARK 3 S11: 0.2143 S12: -0.0133 S13: -0.2257 REMARK 3 S21: -0.1894 S22: -0.0690 S23: -0.0230 REMARK 3 S31: 0.6807 S32: -0.1045 S33: -0.1093 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 14 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0766 22.9160 14.2019 REMARK 3 T TENSOR REMARK 3 T11: 0.3947 T22: 0.2044 REMARK 3 T33: 0.3276 T12: -0.0341 REMARK 3 T13: 0.0716 T23: 0.0283 REMARK 3 L TENSOR REMARK 3 L11: 4.7376 L22: 4.2255 REMARK 3 L33: 7.3903 L12: 0.4193 REMARK 3 L13: -0.7006 L23: 2.1692 REMARK 3 S TENSOR REMARK 3 S11: -0.0103 S12: -0.3106 S13: 0.4802 REMARK 3 S21: -0.2321 S22: -0.1441 S23: 0.1777 REMARK 3 S31: -0.7540 S32: -0.2906 S33: 0.0299 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 19 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.5379 7.9828 -3.8544 REMARK 3 T TENSOR REMARK 3 T11: 0.2597 T22: 0.2142 REMARK 3 T33: 0.2550 T12: 0.0098 REMARK 3 T13: -0.0129 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 5.1674 L22: 0.0477 REMARK 3 L33: 7.1508 L12: 0.4815 REMARK 3 L13: -6.0517 L23: -0.5537 REMARK 3 S TENSOR REMARK 3 S11: -0.3099 S12: 0.8084 S13: -0.4257 REMARK 3 S21: -0.0175 S22: 0.0180 S23: 0.0822 REMARK 3 S31: 0.3556 S32: -0.7991 S33: 0.3168 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 29 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2635 14.1081 11.9980 REMARK 3 T TENSOR REMARK 3 T11: 0.4998 T22: 0.7494 REMARK 3 T33: 0.4170 T12: -0.3824 REMARK 3 T13: -0.0841 T23: 0.1039 REMARK 3 L TENSOR REMARK 3 L11: 4.4343 L22: 3.4042 REMARK 3 L33: 1.8864 L12: 3.8003 REMARK 3 L13: -2.4136 L23: -1.7703 REMARK 3 S TENSOR REMARK 3 S11: 0.5169 S12: -0.3917 S13: 0.8227 REMARK 3 S21: 0.3605 S22: -0.4654 S23: 0.3794 REMARK 3 S31: -1.2318 S32: 2.0796 S33: 0.0903 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 37 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.9060 11.0458 -5.4573 REMARK 3 T TENSOR REMARK 3 T11: 0.1955 T22: 0.1845 REMARK 3 T33: 0.3915 T12: -0.0716 REMARK 3 T13: 0.0058 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 3.1642 L22: 2.5842 REMARK 3 L33: 3.4226 L12: 0.4077 REMARK 3 L13: -2.6116 L23: -2.1434 REMARK 3 S TENSOR REMARK 3 S11: -0.0117 S12: 0.2393 S13: -0.4009 REMARK 3 S21: -0.3877 S22: 0.0128 S23: 0.2623 REMARK 3 S31: 0.2514 S32: -0.2992 S33: -0.0940 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9RVP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1292148204. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2, XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19441 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 52.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.15200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.72800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NEEDLES, REQUIRED DISSECTION REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 150 NL 2A-RNA COMPLEX (7.5 MG/ML, 693 REMARK 280 UM) IN 10 MM HEPES PH 7.4, 100 MM NACL, 1 MM MGCL2, 1 MM DTT WAS REMARK 280 MIXED WITH 150 NL 0.2 M AMMONIUM ACETATE, 0.1 M BIS-TRIS PH 5.9, REMARK 280 19% (W/V) PEG 3350., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 52.09550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.96550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 52.09550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.96550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 323 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 327 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 ASN A 1 REMARK 465 PRO A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 VAL A 128 REMARK 465 GLU A 129 REMARK 465 MET A 130 REMARK 465 ASN A 131 REMARK 465 PRO A 132 REMARK 465 GLY A 133 REMARK 465 U B 31 REMARK 465 A B 32 REMARK 465 A B 33 REMARK 465 C B 47 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H62 A B 29 O HOH B 101 1.27 REMARK 500 O HOH A 240 O HOH A 271 1.93 REMARK 500 O HOH A 281 O HOH A 311 1.94 REMARK 500 O HOH B 131 O HOH B 138 1.99 REMARK 500 O HOH A 204 O HOH A 266 2.01 REMARK 500 O HOH B 203 O HOH B 212 2.06 REMARK 500 O HOH A 285 O HOH A 294 2.10 REMARK 500 O HOH A 288 O HOH A 304 2.12 REMARK 500 N6 A B 29 O HOH B 101 2.12 REMARK 500 O HOH B 204 O HOH B 208 2.14 REMARK 500 O HOH A 318 O HOH A 324 2.16 REMARK 500 O HOH B 164 O HOH B 198 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 294 O HOH B 168 4545 1.93 REMARK 500 O HOH B 208 O HOH B 216 4545 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 326 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH A 328 DISTANCE = 8.54 ANGSTROMS REMARK 525 HOH B 219 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH B 220 DISTANCE = 7.08 ANGSTROMS REMARK 525 HOH B 221 DISTANCE = 8.61 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SASDWQ5 RELATED DB: SASBDB REMARK 900 2A PROTEIN FROM THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (TMEV) REMARK 900 RELATED ID: SASDWR5 RELATED DB: SASBDB REMARK 900 STIMULATORY ELEMENT RNA REMARK 900 RELATED ID: SASDWS5 RELATED DB: SASBDB REMARK 900 2A PROTEIN FROM THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (TMEV) REMARK 900 BOUND TO STIMULATORY ELEMENT RNA DBREF 9RVP A 1 133 UNP Q88595 Q88595_TMEVG 923 1055 DBREF 9RVP B 14 47 GB M20301.1 M20301.1 4249 4282 SEQADV 9RVP GLY A -3 UNP Q88595 EXPRESSION TAG SEQADV 9RVP SER A -2 UNP Q88595 EXPRESSION TAG SEQADV 9RVP HIS A -1 UNP Q88595 EXPRESSION TAG SEQADV 9RVP MET A 0 UNP Q88595 EXPRESSION TAG SEQRES 1 A 137 GLY SER HIS MET ASN PRO ALA SER LEU TYR ARG ILE ASP SEQRES 2 A 137 LEU PHE ILE THR PHE THR ASP GLU LEU ILE THR PHE ASP SEQRES 3 A 137 TYR LYS VAL HIS GLY ARG PRO VAL LEU THR PHE ARG ILE SEQRES 4 A 137 PRO GLY PHE GLY LEU THR PRO ALA GLY ARG MET LEU VAL SEQRES 5 A 137 CYS MET GLY GLU LYS PRO ALA HIS SER PRO PHE THR SER SEQRES 6 A 137 SER LYS SER LEU TYR HIS VAL ILE PHE THR SER THR CYS SEQRES 7 A 137 ASN SER PHE SER PHE THR ILE TYR LYS GLY ARG TYR ARG SEQRES 8 A 137 SER TRP LYS LYS PRO ILE HIS ASP GLU LEU VAL ASP ARG SEQRES 9 A 137 GLY TYR THR THR PHE ARG GLU PHE PHE LYS ALA VAL ARG SEQRES 10 A 137 GLY TYR HIS ALA ASP TYR TYR LYS GLN ARG LEU ILE HIS SEQRES 11 A 137 ASP VAL GLU MET ASN PRO GLY SEQRES 1 B 34 C A A G G U G C G G U G C SEQRES 2 B 34 U A A C U A A A U C C C U SEQRES 3 B 34 A G C A C C C C FORMUL 3 HOH *249(H2 O) HELIX 1 AA1 THR A 41 GLY A 51 1 11 HELIX 2 AA2 THR A 104 TYR A 115 1 12 HELIX 3 AA3 HIS A 116 LYS A 121 1 6 SHEET 1 AA1 6 ARG A 28 PRO A 36 0 SHEET 2 AA1 6 LEU A 18 VAL A 25 -1 N TYR A 23 O LEU A 31 SHEET 3 AA1 6 TYR A 6 PHE A 14 -1 N ASP A 9 O LYS A 24 SHEET 4 AA1 6 SER A 64 SER A 72 -1 O VAL A 68 N LEU A 10 SHEET 5 AA1 6 PHE A 77 LYS A 83 -1 O SER A 78 N THR A 71 SHEET 6 AA1 6 HIS A 94 VAL A 98 -1 O VAL A 98 N PHE A 77 CRYST1 104.191 45.931 65.720 90.00 127.34 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009598 0.000000 0.007322 0.00000 SCALE2 0.000000 0.021772 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019138 0.00000 MASTER 406 0 0 3 6 0 0 6 1914 2 0 14 END