HEADER HYDROLASE 10-JUL-25 9RWX TITLE ANOXYBACILLUS AYDERENSIS BGLA9 GLUCOSE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCOSIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.21; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANOXYBACILLUS AYDERENSIS; SOURCE 3 ORGANISM_TAXID: 265546; SOURCE 4 GENE: JV16_01116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLUCOSYL HYDROLASE, COMPLEX, GLUCOSE LIGAND, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR U.RAHMAN,J.RAFFERTY,S.KHAN REVDAT 1 22-JUL-26 9RWX 0 JRNL AUTH U.RAHMAN,J.RAFFERTY,S.KHAN,N.S.ZADA JRNL TITL STRUCTURAL INSIGHTS INTO NOVEL GLUCOSE-TOLERANT BGLA9 REVEAL JRNL TITL 2 KEY DETERMINANTS FOR STEVIOSIDE BETA-1,2 GLYCOSIDIC BOND JRNL TITL 3 CLEAVAGE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 53737 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.564 REMARK 3 FREE R VALUE TEST SET COUNT : 1986 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.63 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2559 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 61.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.3300 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3716 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 281 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.27500 REMARK 3 B22 (A**2) : -0.29000 REMARK 3 B33 (A**2) : 0.01500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.089 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.088 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.852 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3849 ; 0.016 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3481 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5228 ; 2.300 ; 1.822 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8016 ; 0.802 ; 1.770 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 453 ; 6.654 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 18 ; 6.338 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 619 ;13.211 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 534 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4577 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 943 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 778 ; 0.231 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 53 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1885 ; 0.198 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 239 ; 0.132 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 6 ; 0.354 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1809 ; 1.751 ; 1.450 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1809 ; 1.752 ; 1.450 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2260 ; 2.391 ; 2.596 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2261 ; 2.395 ; 2.597 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2040 ; 3.599 ; 1.835 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2041 ; 3.598 ; 1.836 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2967 ; 5.454 ; 3.174 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2968 ; 5.453 ; 3.174 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Ap 1 Ap 502 REMARK 3 ORIGIN FOR THE GROUP (A): 19.2394 -0.1594 11.8587 REMARK 3 T TENSOR REMARK 3 T11: 0.0121 T22: 0.0049 REMARK 3 T33: 0.0029 T12: -0.0025 REMARK 3 T13: -0.0026 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.7441 L22: 0.9209 REMARK 3 L33: 0.7597 L12: 0.1066 REMARK 3 L13: 0.0311 L23: 0.2571 REMARK 3 S TENSOR REMARK 3 S11: -0.0171 S12: 0.0087 S13: -0.0008 REMARK 3 S21: -0.0149 S22: 0.0138 S23: 0.0196 REMARK 3 S31: -0.0246 S32: -0.0358 S33: 0.0033 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9RWX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1292149262. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-SEP-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55786 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 58.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.49100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20%W/V PEG4000, 20%V/V 2-PROPANOL, 0.1 REMARK 280 M NA CITRATE PH5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.75650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.20550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.91400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.20550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.75650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.91400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 453 REMARK 465 LYS A 454 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 62 CD GLU A 62 OE1 0.087 REMARK 500 GLU A 441 CD GLU A 441 OE1 0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 43 CD - CE - NZ ANGL. DEV. = -14.3 DEGREES REMARK 500 ARG A 59 NE - CZ - NH1 ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG A 59 NE - CZ - NH2 ANGL. DEV. = -9.3 DEGREES REMARK 500 ARG A 241 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 341 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 GLN A 367 CB - CA - C ANGL. DEV. = -18.8 DEGREES REMARK 500 GLN A 367 N - CA - CB ANGL. DEV. = 13.5 DEGREES REMARK 500 GLU A 369 CG - CD - OE2 ANGL. DEV. = -12.4 DEGREES REMARK 500 ARG A 380 NE - CZ - NH1 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG A 388 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 430 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 430 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 53 -125.81 55.79 REMARK 500 TRP A 121 -7.87 97.69 REMARK 500 ASP A 122 54.21 -93.27 REMARK 500 ASP A 274 61.51 -106.05 REMARK 500 GLN A 285 41.44 -80.78 REMARK 500 TYR A 296 -38.13 -134.65 REMARK 500 GLU A 409 58.28 -92.99 REMARK 500 TRP A 410 -128.69 49.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 141 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 503 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 OCS A 86 O REMARK 620 2 THR A 88 O 88.2 REMARK 620 3 LYS A 91 O 104.4 89.2 REMARK 620 4 HOH A 628 O 163.6 106.3 83.9 REMARK 620 5 HOH A 815 O 84.5 163.7 78.6 83.3 REMARK 620 6 HOH A 832 O 90.9 102.1 161.4 78.7 92.6 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9RVF RELATED DB: PDB REMARK 900 SAME PROTEIN WITHOUT GLUCOSE LIGAND DBREF1 9RWX A 1 454 UNP A0A0D0G9C2_9BACL DBREF2 9RWX A A0A0D0G9C2 1 453 SEQADV 9RWX VAL A 2 UNP A0A0D0G9C INSERTION SEQRES 1 A 454 MET VAL LEU GLN PHE PRO LYS ASP PHE ILE TRP GLY ALA SEQRES 2 A 454 ALA THR SER SER TYR GLN ILE GLU GLY THR ALA THR GLY SEQRES 3 A 454 GLU ASP LYS ILE TYR SER ILE TRP ASP HIS PHE SER ARG SEQRES 4 A 454 ILE PRO GLY LYS VAL ALA ASN GLY ASP ASN GLY ASP ILE SEQRES 5 A 454 ALA ILE ASP HIS TYR ASN ARG TYR VAL GLU ASP ILE ALA SEQRES 6 A 454 LEU MET LYS ALA LEU HIS LEU LYS ALA TYR ARG PHE SER SEQRES 7 A 454 THR SER TRP ALA ARG LEU TYR OCS GLU THR PRO GLY LYS SEQRES 8 A 454 PHE ASN GLU LYS GLY LEU ASP PHE TYR LYS ARG LEU VAL SEQRES 9 A 454 HIS GLU LEU LEU GLU ASN GLY ILE GLU PRO MET LEU THR SEQRES 10 A 454 ILE TYR HIS TRP ASP MET PRO GLN ALA LEU GLN GLU LYS SEQRES 11 A 454 GLY GLY TRP GLU ASN ARG ASP ILE VAL HIS TYR PHE GLN SEQRES 12 A 454 GLU TYR ALA ALA PHE LEU TYR GLU ASN LEU GLY ASP VAL SEQRES 13 A 454 VAL LYS LYS TRP ILE THR HIS ASN GLU PRO TRP VAL VAL SEQRES 14 A 454 THR TYR LEU GLY TYR GLY ASN GLY GLU HIS ALA PRO GLY SEQRES 15 A 454 ILE GLN ASN PHE THR SER PHE LEU LYS ALA ALA HIS HIS SEQRES 16 A 454 VAL LEU LEU SER HIS GLY GLU ALA VAL LYS ALA PHE ARG SEQRES 17 A 454 ALA ILE GLY SER LYS ASP GLY GLU ILE GLY ILE THR LEU SEQRES 18 A 454 ASN LEU THR PRO GLY TYR ALA VAL ASP PRO LYS ASP GLU SEQRES 19 A 454 LYS ALA VAL ASP ALA ALA ARG LYS TRP ASP GLY PHE MET SEQRES 20 A 454 ASN ARG TRP PHE LEU ASP PRO VAL PHE LYS GLY GLN TYR SEQRES 21 A 454 PRO ALA ASP MET LEU GLU VAL TYR LYS ASP TYR LEU PRO SEQRES 22 A 454 ASP VAL TYR LYS GLU GLY ASP LEU GLN THR ILE GLN GLN SEQRES 23 A 454 PRO ILE ASP PHE PHE GLY PHE ASN TYR TYR SER THR ALA SEQRES 24 A 454 THR LEU LYS ASP TRP LYS THR GLY ASP ARG GLU PRO ILE SEQRES 25 A 454 VAL PHE GLU HIS VAL SER THR GLY ARG PRO VAL THR ASP SEQRES 26 A 454 MET ASN TRP GLU VAL ASN PRO ASN GLY LEU PHE ASP LEU SEQRES 27 A 454 MET VAL ARG LEU LYS LYS ASP TYR GLY ASP ILE PRO LEU SEQRES 28 A 454 TYR ILE THR GLU ASN GLY ALA ALA TYR LYS ASP ARG VAL SEQRES 29 A 454 ASN GLU GLN GLY GLU VAL GLU ASP ASP GLU ARG VAL ALA SEQRES 30 A 454 TYR ILE ARG GLU HIS LEU ILE ALA CYS HIS ARG ALA ILE SEQRES 31 A 454 GLU GLN GLY VAL ASN LEU LYS GLY TYR TYR VAL TRP SER SEQRES 32 A 454 LEU PHE ASP ASN PHE GLU TRP ALA PHE GLY TYR ASP LYS SEQRES 33 A 454 ARG PHE GLY ILE VAL TYR VAL ASP TYR GLU THR LEU GLU SEQRES 34 A 454 ARG ILE PRO LYS LYS SER ALA LEU TRP TYR LYS GLU THR SEQRES 35 A 454 ILE ILE ASN ASN GLY LEU GLN VAL ASP ASN ASP LYS MODRES 9RWX OCS A 86 CYS MODIFIED RESIDUE HET OCS A 86 9 HET BGC A 501 12 HET EDO A 502 4 HET K A 503 1 HETNAM OCS CYSTEINESULFONIC ACID HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM K POTASSIUM ION HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 OCS C3 H7 N O5 S FORMUL 2 BGC C6 H12 O6 FORMUL 3 EDO C2 H6 O2 FORMUL 4 K K 1+ FORMUL 5 HOH *281(H2 O) HELIX 1 AA1 SER A 16 GLU A 21 1 6 HELIX 2 AA2 SER A 32 SER A 38 1 7 HELIX 3 AA3 VAL A 44 ASP A 48 5 5 HELIX 4 AA4 ASP A 55 LEU A 70 1 16 HELIX 5 AA5 SER A 80 TYR A 85 1 6 HELIX 6 AA6 ASN A 93 ASN A 110 1 18 HELIX 7 AA7 PRO A 124 GLU A 129 1 6 HELIX 8 AA8 LYS A 130 ARG A 136 5 7 HELIX 9 AA9 ASP A 137 GLY A 154 1 18 HELIX 10 AB1 GLU A 165 GLY A 175 1 11 HELIX 11 AB2 ASN A 185 ILE A 210 1 26 HELIX 12 AB3 ASP A 233 ASN A 248 1 16 HELIX 13 AB4 ASN A 248 GLY A 258 1 11 HELIX 14 AB5 PRO A 261 LYS A 269 1 9 HELIX 15 AB6 ASP A 270 LEU A 272 5 3 HELIX 16 AB7 GLY A 279 GLN A 285 1 7 HELIX 17 AB8 ASN A 331 GLY A 347 1 17 HELIX 18 AB9 ASP A 372 GLN A 392 1 21 HELIX 19 AC1 GLU A 409 LYS A 416 5 8 HELIX 20 AC2 LYS A 433 ASN A 446 1 14 SHEET 1 AA1 2 VAL A 2 GLN A 4 0 SHEET 2 AA1 2 GLY A 447 GLN A 449 -1 O LEU A 448 N LEU A 3 SHEET 1 AA2 9 ILE A 10 ALA A 14 0 SHEET 2 AA2 9 ALA A 74 SER A 78 1 O ARG A 76 N ALA A 13 SHEET 3 AA2 9 GLU A 113 TYR A 119 1 O THR A 117 N PHE A 77 SHEET 4 AA2 9 LYS A 159 ASN A 164 1 O ILE A 161 N ILE A 118 SHEET 5 AA2 9 GLU A 216 ASN A 222 1 O GLY A 218 N THR A 162 SHEET 6 AA2 9 PHE A 291 ASN A 294 1 O GLY A 292 N ILE A 219 SHEET 7 AA2 9 LEU A 351 ASN A 356 1 O TYR A 352 N PHE A 291 SHEET 8 AA2 9 LEU A 396 TRP A 402 1 O LYS A 397 N LEU A 351 SHEET 9 AA2 9 ILE A 10 ALA A 14 1 N GLY A 12 O TYR A 399 SHEET 1 AA3 3 GLY A 226 ALA A 228 0 SHEET 2 AA3 3 ALA A 299 LYS A 305 1 O ALA A 299 N TYR A 227 SHEET 3 AA3 3 VAL A 313 HIS A 316 -1 O GLU A 315 N LYS A 302 SHEET 1 AA4 2 VAL A 421 VAL A 423 0 SHEET 2 AA4 2 ARG A 430 PRO A 432 -1 O ILE A 431 N TYR A 422 LINK C TYR A 85 N OCS A 86 1555 1555 1.34 LINK C OCS A 86 N GLU A 87 1555 1555 1.32 LINK O OCS A 86 K K A 503 1555 1555 2.27 LINK O THR A 88 K K A 503 1555 1555 2.57 LINK O LYS A 91 K K A 503 1555 1555 2.41 LINK K K A 503 O HOH A 628 1555 1555 2.59 LINK K K A 503 O HOH A 815 1555 1555 2.43 LINK K K A 503 O HOH A 832 1555 1555 2.46 CISPEP 1 ALA A 180 PRO A 181 0 1.83 CISPEP 2 TRP A 402 SER A 403 0 10.83 CRYST1 61.513 67.828 112.411 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016257 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014743 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008896 0.00000 CONECT 681 691 CONECT 691 681 692 CONECT 692 691 693 695 CONECT 693 692 694 CONECT 694 693 697 698 699 CONECT 695 692 696 700 CONECT 696 695 3739 CONECT 697 694 CONECT 698 694 CONECT 699 694 CONECT 700 695 CONECT 712 3739 CONECT 730 3739 CONECT 3723 3724 3728 3730 CONECT 3724 3723 3725 3731 CONECT 3725 3724 3726 3732 CONECT 3726 3725 3727 3733 CONECT 3727 3726 3734 CONECT 3728 3723 3729 3733 CONECT 3729 3728 CONECT 3730 3723 CONECT 3731 3724 CONECT 3732 3725 CONECT 3733 3726 3728 CONECT 3734 3727 CONECT 3735 3736 3737 CONECT 3736 3735 CONECT 3737 3735 3738 CONECT 3738 3737 CONECT 3739 696 712 730 3767 CONECT 3739 3954 3971 CONECT 3767 3739 CONECT 3954 3739 CONECT 3971 3739 MASTER 372 0 4 20 16 0 0 6 4014 1 34 35 END