data_9RY4 # _entry.id 9RY4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.416 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9RY4 pdb_00009ry4 10.2210/pdb9ry4/pdb WWPDB D_1292149204 ? ? EMDB EMD-54372 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-07-22 ? 2 'EM metadata' 1 0 2026-07-22 ? 3 'Additional map' 1 0 2026-07-22 1 4 FSC 1 0 2026-07-22 ? 5 'Half map' 1 0 2026-07-22 1 6 'Half map' 1 0 2026-07-22 2 7 Image 1 0 2026-07-22 ? 8 Mask 1 0 2026-07-22 1 9 'Primary map' 1 0 2026-07-22 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Additional map' repository 'Initial release' ? ? 4 4 FSC repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 'Half map' repository 'Initial release' ? ? 7 7 Image repository 'Initial release' ? ? 8 8 Mask repository 'Initial release' ? ? 9 9 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9RY4 _pdbx_database_status.recvd_initial_deposition_date 2025-07-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Single particle reconstruction of Rhodospirillum rubrum encapsulin' _pdbx_database_related.db_id EMD-54372 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 5 _pdbx_contact_author.email jon.marles-wright1@newcastle.ac.uk _pdbx_contact_author.name_first Jon _pdbx_contact_author.name_last Marles-Wright _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-9156-3284 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'McIver, Z.' 1 0000-0002-4352-9049 'McCorvie, T.J.' 2 0000-0002-1502-7113 'Basle, A.' 3 0000-0002-4899-3086 'Marles-Wright, J.' 4 0000-0002-9156-3284 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Single particle reconstruction of Rhodospirillum rubrum encapsulin' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'McIver, Z.' 1 0000-0002-4352-9049 primary 'McCorvie, T.J.' 2 0000-0002-1502-7113 primary 'Basle, A.' 3 0000-0002-4899-3086 primary 'Marles-Wright, J.' 4 0000-0002-9156-3284 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Type 1 encapsulin shell protein' _entity.formula_weight 29765.936 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MNDLMRDLAPISAKAWAEIETEARGTLTVTLAARKVVDFKGPLGWDASSVSLGRTEALAEEPKAAGSAAVVTVRKRAVQP LIELCVPFTLKRAELEAIARGASDADLDPVIEAARAIAIAEDRAVFHGFAAGGITGIGEASAEHALDLPADLADFPGVLV RALAVLRDRGVDGPYALVLGRTVYQQLMETTTPGGYPVLQHVRRLFEGPLIWAPGVDGAMLISQRGGDFELTVGRDFSIG YHDHDAQSVHLYLQESMTFRCLGPEAAVPLRGLSQAATKA ; _entity_poly.pdbx_seq_one_letter_code_can ;MNDLMRDLAPISAKAWAEIETEARGTLTVTLAARKVVDFKGPLGWDASSVSLGRTEALAEEPKAAGSAAVVTVRKRAVQP LIELCVPFTLKRAELEAIARGASDADLDPVIEAARAIAIAEDRAVFHGFAAGGITGIGEASAEHALDLPADLADFPGVLV RALAVLRDRGVDGPYALVLGRTVYQQLMETTTPGGYPVLQHVRRLFEGPLIWAPGVDGAMLISQRGGDFELTVGRDFSIG YHDHDAQSVHLYLQESMTFRCLGPEAAVPLRGLSQAATKA ; _entity_poly.pdbx_strand_id A0 _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASN n 1 3 ASP n 1 4 LEU n 1 5 MET n 1 6 ARG n 1 7 ASP n 1 8 LEU n 1 9 ALA n 1 10 PRO n 1 11 ILE n 1 12 SER n 1 13 ALA n 1 14 LYS n 1 15 ALA n 1 16 TRP n 1 17 ALA n 1 18 GLU n 1 19 ILE n 1 20 GLU n 1 21 THR n 1 22 GLU n 1 23 ALA n 1 24 ARG n 1 25 GLY n 1 26 THR n 1 27 LEU n 1 28 THR n 1 29 VAL n 1 30 THR n 1 31 LEU n 1 32 ALA n 1 33 ALA n 1 34 ARG n 1 35 LYS n 1 36 VAL n 1 37 VAL n 1 38 ASP n 1 39 PHE n 1 40 LYS n 1 41 GLY n 1 42 PRO n 1 43 LEU n 1 44 GLY n 1 45 TRP n 1 46 ASP n 1 47 ALA n 1 48 SER n 1 49 SER n 1 50 VAL n 1 51 SER n 1 52 LEU n 1 53 GLY n 1 54 ARG n 1 55 THR n 1 56 GLU n 1 57 ALA n 1 58 LEU n 1 59 ALA n 1 60 GLU n 1 61 GLU n 1 62 PRO n 1 63 LYS n 1 64 ALA n 1 65 ALA n 1 66 GLY n 1 67 SER n 1 68 ALA n 1 69 ALA n 1 70 VAL n 1 71 VAL n 1 72 THR n 1 73 VAL n 1 74 ARG n 1 75 LYS n 1 76 ARG n 1 77 ALA n 1 78 VAL n 1 79 GLN n 1 80 PRO n 1 81 LEU n 1 82 ILE n 1 83 GLU n 1 84 LEU n 1 85 CYS n 1 86 VAL n 1 87 PRO n 1 88 PHE n 1 89 THR n 1 90 LEU n 1 91 LYS n 1 92 ARG n 1 93 ALA n 1 94 GLU n 1 95 LEU n 1 96 GLU n 1 97 ALA n 1 98 ILE n 1 99 ALA n 1 100 ARG n 1 101 GLY n 1 102 ALA n 1 103 SER n 1 104 ASP n 1 105 ALA n 1 106 ASP n 1 107 LEU n 1 108 ASP n 1 109 PRO n 1 110 VAL n 1 111 ILE n 1 112 GLU n 1 113 ALA n 1 114 ALA n 1 115 ARG n 1 116 ALA n 1 117 ILE n 1 118 ALA n 1 119 ILE n 1 120 ALA n 1 121 GLU n 1 122 ASP n 1 123 ARG n 1 124 ALA n 1 125 VAL n 1 126 PHE n 1 127 HIS n 1 128 GLY n 1 129 PHE n 1 130 ALA n 1 131 ALA n 1 132 GLY n 1 133 GLY n 1 134 ILE n 1 135 THR n 1 136 GLY n 1 137 ILE n 1 138 GLY n 1 139 GLU n 1 140 ALA n 1 141 SER n 1 142 ALA n 1 143 GLU n 1 144 HIS n 1 145 ALA n 1 146 LEU n 1 147 ASP n 1 148 LEU n 1 149 PRO n 1 150 ALA n 1 151 ASP n 1 152 LEU n 1 153 ALA n 1 154 ASP n 1 155 PHE n 1 156 PRO n 1 157 GLY n 1 158 VAL n 1 159 LEU n 1 160 VAL n 1 161 ARG n 1 162 ALA n 1 163 LEU n 1 164 ALA n 1 165 VAL n 1 166 LEU n 1 167 ARG n 1 168 ASP n 1 169 ARG n 1 170 GLY n 1 171 VAL n 1 172 ASP n 1 173 GLY n 1 174 PRO n 1 175 TYR n 1 176 ALA n 1 177 LEU n 1 178 VAL n 1 179 LEU n 1 180 GLY n 1 181 ARG n 1 182 THR n 1 183 VAL n 1 184 TYR n 1 185 GLN n 1 186 GLN n 1 187 LEU n 1 188 MET n 1 189 GLU n 1 190 THR n 1 191 THR n 1 192 THR n 1 193 PRO n 1 194 GLY n 1 195 GLY n 1 196 TYR n 1 197 PRO n 1 198 VAL n 1 199 LEU n 1 200 GLN n 1 201 HIS n 1 202 VAL n 1 203 ARG n 1 204 ARG n 1 205 LEU n 1 206 PHE n 1 207 GLU n 1 208 GLY n 1 209 PRO n 1 210 LEU n 1 211 ILE n 1 212 TRP n 1 213 ALA n 1 214 PRO n 1 215 GLY n 1 216 VAL n 1 217 ASP n 1 218 GLY n 1 219 ALA n 1 220 MET n 1 221 LEU n 1 222 ILE n 1 223 SER n 1 224 GLN n 1 225 ARG n 1 226 GLY n 1 227 GLY n 1 228 ASP n 1 229 PHE n 1 230 GLU n 1 231 LEU n 1 232 THR n 1 233 VAL n 1 234 GLY n 1 235 ARG n 1 236 ASP n 1 237 PHE n 1 238 SER n 1 239 ILE n 1 240 GLY n 1 241 TYR n 1 242 HIS n 1 243 ASP n 1 244 HIS n 1 245 ASP n 1 246 ALA n 1 247 GLN n 1 248 SER n 1 249 VAL n 1 250 HIS n 1 251 LEU n 1 252 TYR n 1 253 LEU n 1 254 GLN n 1 255 GLU n 1 256 SER n 1 257 MET n 1 258 THR n 1 259 PHE n 1 260 ARG n 1 261 CYS n 1 262 LEU n 1 263 GLY n 1 264 PRO n 1 265 GLU n 1 266 ALA n 1 267 ALA n 1 268 VAL n 1 269 PRO n 1 270 LEU n 1 271 ARG n 1 272 GLY n 1 273 LEU n 1 274 SER n 1 275 GLN n 1 276 ALA n 1 277 ALA n 1 278 THR n 1 279 LYS n 1 280 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 280 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'enc, Rru_A0974' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rhodospirillum rubrum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1085 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A0 . n A 1 2 ASN 2 2 2 ASN ASN A0 . n A 1 3 ASP 3 3 3 ASP ASP A0 . n A 1 4 LEU 4 4 4 LEU LEU A0 . n A 1 5 MET 5 5 5 MET MET A0 . n A 1 6 ARG 6 6 6 ARG ARG A0 . n A 1 7 ASP 7 7 7 ASP ASP A0 . n A 1 8 LEU 8 8 8 LEU LEU A0 . n A 1 9 ALA 9 9 9 ALA ALA A0 . n A 1 10 PRO 10 10 10 PRO PRO A0 . n A 1 11 ILE 11 11 11 ILE ILE A0 . n A 1 12 SER 12 12 12 SER SER A0 . n A 1 13 ALA 13 13 13 ALA ALA A0 . n A 1 14 LYS 14 14 14 LYS LYS A0 . n A 1 15 ALA 15 15 15 ALA ALA A0 . n A 1 16 TRP 16 16 16 TRP TRP A0 . n A 1 17 ALA 17 17 17 ALA ALA A0 . n A 1 18 GLU 18 18 18 GLU GLU A0 . n A 1 19 ILE 19 19 19 ILE ILE A0 . n A 1 20 GLU 20 20 20 GLU GLU A0 . n A 1 21 THR 21 21 21 THR THR A0 . n A 1 22 GLU 22 22 22 GLU GLU A0 . n A 1 23 ALA 23 23 23 ALA ALA A0 . n A 1 24 ARG 24 24 24 ARG ARG A0 . n A 1 25 GLY 25 25 25 GLY GLY A0 . n A 1 26 THR 26 26 26 THR THR A0 . n A 1 27 LEU 27 27 27 LEU LEU A0 . n A 1 28 THR 28 28 28 THR THR A0 . n A 1 29 VAL 29 29 29 VAL VAL A0 . n A 1 30 THR 30 30 30 THR THR A0 . n A 1 31 LEU 31 31 31 LEU LEU A0 . n A 1 32 ALA 32 32 32 ALA ALA A0 . n A 1 33 ALA 33 33 33 ALA ALA A0 . n A 1 34 ARG 34 34 34 ARG ARG A0 . n A 1 35 LYS 35 35 35 LYS LYS A0 . n A 1 36 VAL 36 36 36 VAL VAL A0 . n A 1 37 VAL 37 37 37 VAL VAL A0 . n A 1 38 ASP 38 38 38 ASP ASP A0 . n A 1 39 PHE 39 39 39 PHE PHE A0 . n A 1 40 LYS 40 40 40 LYS LYS A0 . n A 1 41 GLY 41 41 41 GLY GLY A0 . n A 1 42 PRO 42 42 42 PRO PRO A0 . n A 1 43 LEU 43 43 43 LEU LEU A0 . n A 1 44 GLY 44 44 44 GLY GLY A0 . n A 1 45 TRP 45 45 45 TRP TRP A0 . n A 1 46 ASP 46 46 46 ASP ASP A0 . n A 1 47 ALA 47 47 47 ALA ALA A0 . n A 1 48 SER 48 48 48 SER SER A0 . n A 1 49 SER 49 49 49 SER SER A0 . n A 1 50 VAL 50 50 50 VAL VAL A0 . n A 1 51 SER 51 51 51 SER SER A0 . n A 1 52 LEU 52 52 52 LEU LEU A0 . n A 1 53 GLY 53 53 53 GLY GLY A0 . n A 1 54 ARG 54 54 54 ARG ARG A0 . n A 1 55 THR 55 55 55 THR THR A0 . n A 1 56 GLU 56 56 56 GLU GLU A0 . n A 1 57 ALA 57 57 57 ALA ALA A0 . n A 1 58 LEU 58 58 58 LEU LEU A0 . n A 1 59 ALA 59 59 59 ALA ALA A0 . n A 1 60 GLU 60 60 ? ? ? A0 . n A 1 61 GLU 61 61 ? ? ? A0 . n A 1 62 PRO 62 62 ? ? ? A0 . n A 1 63 LYS 63 63 ? ? ? A0 . n A 1 64 ALA 64 64 ? ? ? A0 . n A 1 65 ALA 65 65 ? ? ? A0 . n A 1 66 GLY 66 66 ? ? ? A0 . n A 1 67 SER 67 67 ? ? ? A0 . n A 1 68 ALA 68 68 ? ? ? A0 . n A 1 69 ALA 69 69 69 ALA ALA A0 . n A 1 70 VAL 70 70 70 VAL VAL A0 . n A 1 71 VAL 71 71 71 VAL VAL A0 . n A 1 72 THR 72 72 72 THR THR A0 . n A 1 73 VAL 73 73 73 VAL VAL A0 . n A 1 74 ARG 74 74 74 ARG ARG A0 . n A 1 75 LYS 75 75 75 LYS LYS A0 . n A 1 76 ARG 76 76 76 ARG ARG A0 . n A 1 77 ALA 77 77 77 ALA ALA A0 . n A 1 78 VAL 78 78 78 VAL VAL A0 . n A 1 79 GLN 79 79 79 GLN GLN A0 . n A 1 80 PRO 80 80 80 PRO PRO A0 . n A 1 81 LEU 81 81 81 LEU LEU A0 . n A 1 82 ILE 82 82 82 ILE ILE A0 . n A 1 83 GLU 83 83 83 GLU GLU A0 . n A 1 84 LEU 84 84 84 LEU LEU A0 . n A 1 85 CYS 85 85 85 CYS CYS A0 . n A 1 86 VAL 86 86 86 VAL VAL A0 . n A 1 87 PRO 87 87 87 PRO PRO A0 . n A 1 88 PHE 88 88 88 PHE PHE A0 . n A 1 89 THR 89 89 89 THR THR A0 . n A 1 90 LEU 90 90 90 LEU LEU A0 . n A 1 91 LYS 91 91 91 LYS LYS A0 . n A 1 92 ARG 92 92 92 ARG ARG A0 . n A 1 93 ALA 93 93 93 ALA ALA A0 . n A 1 94 GLU 94 94 94 GLU GLU A0 . n A 1 95 LEU 95 95 95 LEU LEU A0 . n A 1 96 GLU 96 96 96 GLU GLU A0 . n A 1 97 ALA 97 97 97 ALA ALA A0 . n A 1 98 ILE 98 98 98 ILE ILE A0 . n A 1 99 ALA 99 99 99 ALA ALA A0 . n A 1 100 ARG 100 100 100 ARG ARG A0 . n A 1 101 GLY 101 101 101 GLY GLY A0 . n A 1 102 ALA 102 102 102 ALA ALA A0 . n A 1 103 SER 103 103 103 SER SER A0 . n A 1 104 ASP 104 104 104 ASP ASP A0 . n A 1 105 ALA 105 105 105 ALA ALA A0 . n A 1 106 ASP 106 106 106 ASP ASP A0 . n A 1 107 LEU 107 107 107 LEU LEU A0 . n A 1 108 ASP 108 108 108 ASP ASP A0 . n A 1 109 PRO 109 109 109 PRO PRO A0 . n A 1 110 VAL 110 110 110 VAL VAL A0 . n A 1 111 ILE 111 111 111 ILE ILE A0 . n A 1 112 GLU 112 112 112 GLU GLU A0 . n A 1 113 ALA 113 113 113 ALA ALA A0 . n A 1 114 ALA 114 114 114 ALA ALA A0 . n A 1 115 ARG 115 115 115 ARG ARG A0 . n A 1 116 ALA 116 116 116 ALA ALA A0 . n A 1 117 ILE 117 117 117 ILE ILE A0 . n A 1 118 ALA 118 118 118 ALA ALA A0 . n A 1 119 ILE 119 119 119 ILE ILE A0 . n A 1 120 ALA 120 120 120 ALA ALA A0 . n A 1 121 GLU 121 121 121 GLU GLU A0 . n A 1 122 ASP 122 122 122 ASP ASP A0 . n A 1 123 ARG 123 123 123 ARG ARG A0 . n A 1 124 ALA 124 124 124 ALA ALA A0 . n A 1 125 VAL 125 125 125 VAL VAL A0 . n A 1 126 PHE 126 126 126 PHE PHE A0 . n A 1 127 HIS 127 127 127 HIS HIS A0 . n A 1 128 GLY 128 128 128 GLY GLY A0 . n A 1 129 PHE 129 129 129 PHE PHE A0 . n A 1 130 ALA 130 130 130 ALA ALA A0 . n A 1 131 ALA 131 131 131 ALA ALA A0 . n A 1 132 GLY 132 132 132 GLY GLY A0 . n A 1 133 GLY 133 133 133 GLY GLY A0 . n A 1 134 ILE 134 134 134 ILE ILE A0 . n A 1 135 THR 135 135 135 THR THR A0 . n A 1 136 GLY 136 136 136 GLY GLY A0 . n A 1 137 ILE 137 137 137 ILE ILE A0 . n A 1 138 GLY 138 138 138 GLY GLY A0 . n A 1 139 GLU 139 139 139 GLU GLU A0 . n A 1 140 ALA 140 140 140 ALA ALA A0 . n A 1 141 SER 141 141 141 SER SER A0 . n A 1 142 ALA 142 142 142 ALA ALA A0 . n A 1 143 GLU 143 143 143 GLU GLU A0 . n A 1 144 HIS 144 144 144 HIS HIS A0 . n A 1 145 ALA 145 145 145 ALA ALA A0 . n A 1 146 LEU 146 146 146 LEU LEU A0 . n A 1 147 ASP 147 147 147 ASP ASP A0 . n A 1 148 LEU 148 148 148 LEU LEU A0 . n A 1 149 PRO 149 149 149 PRO PRO A0 . n A 1 150 ALA 150 150 150 ALA ALA A0 . n A 1 151 ASP 151 151 151 ASP ASP A0 . n A 1 152 LEU 152 152 152 LEU LEU A0 . n A 1 153 ALA 153 153 153 ALA ALA A0 . n A 1 154 ASP 154 154 154 ASP ASP A0 . n A 1 155 PHE 155 155 155 PHE PHE A0 . n A 1 156 PRO 156 156 156 PRO PRO A0 . n A 1 157 GLY 157 157 157 GLY GLY A0 . n A 1 158 VAL 158 158 158 VAL VAL A0 . n A 1 159 LEU 159 159 159 LEU LEU A0 . n A 1 160 VAL 160 160 160 VAL VAL A0 . n A 1 161 ARG 161 161 161 ARG ARG A0 . n A 1 162 ALA 162 162 162 ALA ALA A0 . n A 1 163 LEU 163 163 163 LEU LEU A0 . n A 1 164 ALA 164 164 164 ALA ALA A0 . n A 1 165 VAL 165 165 165 VAL VAL A0 . n A 1 166 LEU 166 166 166 LEU LEU A0 . n A 1 167 ARG 167 167 167 ARG ARG A0 . n A 1 168 ASP 168 168 168 ASP ASP A0 . n A 1 169 ARG 169 169 169 ARG ARG A0 . n A 1 170 GLY 170 170 170 GLY GLY A0 . n A 1 171 VAL 171 171 171 VAL VAL A0 . n A 1 172 ASP 172 172 172 ASP ASP A0 . n A 1 173 GLY 173 173 173 GLY GLY A0 . n A 1 174 PRO 174 174 174 PRO PRO A0 . n A 1 175 TYR 175 175 175 TYR TYR A0 . n A 1 176 ALA 176 176 176 ALA ALA A0 . n A 1 177 LEU 177 177 177 LEU LEU A0 . n A 1 178 VAL 178 178 178 VAL VAL A0 . n A 1 179 LEU 179 179 179 LEU LEU A0 . n A 1 180 GLY 180 180 180 GLY GLY A0 . n A 1 181 ARG 181 181 181 ARG ARG A0 . n A 1 182 THR 182 182 182 THR THR A0 . n A 1 183 VAL 183 183 183 VAL VAL A0 . n A 1 184 TYR 184 184 184 TYR TYR A0 . n A 1 185 GLN 185 185 185 GLN GLN A0 . n A 1 186 GLN 186 186 186 GLN GLN A0 . n A 1 187 LEU 187 187 187 LEU LEU A0 . n A 1 188 MET 188 188 188 MET MET A0 . n A 1 189 GLU 189 189 189 GLU GLU A0 . n A 1 190 THR 190 190 190 THR THR A0 . n A 1 191 THR 191 191 191 THR THR A0 . n A 1 192 THR 192 192 192 THR THR A0 . n A 1 193 PRO 193 193 193 PRO PRO A0 . n A 1 194 GLY 194 194 194 GLY GLY A0 . n A 1 195 GLY 195 195 195 GLY GLY A0 . n A 1 196 TYR 196 196 196 TYR TYR A0 . n A 1 197 PRO 197 197 197 PRO PRO A0 . n A 1 198 VAL 198 198 198 VAL VAL A0 . n A 1 199 LEU 199 199 199 LEU LEU A0 . n A 1 200 GLN 200 200 200 GLN GLN A0 . n A 1 201 HIS 201 201 201 HIS HIS A0 . n A 1 202 VAL 202 202 202 VAL VAL A0 . n A 1 203 ARG 203 203 203 ARG ARG A0 . n A 1 204 ARG 204 204 204 ARG ARG A0 . n A 1 205 LEU 205 205 205 LEU LEU A0 . n A 1 206 PHE 206 206 206 PHE PHE A0 . n A 1 207 GLU 207 207 207 GLU GLU A0 . n A 1 208 GLY 208 208 208 GLY GLY A0 . n A 1 209 PRO 209 209 209 PRO PRO A0 . n A 1 210 LEU 210 210 210 LEU LEU A0 . n A 1 211 ILE 211 211 211 ILE ILE A0 . n A 1 212 TRP 212 212 212 TRP TRP A0 . n A 1 213 ALA 213 213 213 ALA ALA A0 . n A 1 214 PRO 214 214 214 PRO PRO A0 . n A 1 215 GLY 215 215 215 GLY GLY A0 . n A 1 216 VAL 216 216 216 VAL VAL A0 . n A 1 217 ASP 217 217 217 ASP ASP A0 . n A 1 218 GLY 218 218 218 GLY GLY A0 . n A 1 219 ALA 219 219 219 ALA ALA A0 . n A 1 220 MET 220 220 220 MET MET A0 . n A 1 221 LEU 221 221 221 LEU LEU A0 . n A 1 222 ILE 222 222 222 ILE ILE A0 . n A 1 223 SER 223 223 223 SER SER A0 . n A 1 224 GLN 224 224 224 GLN GLN A0 . n A 1 225 ARG 225 225 225 ARG ARG A0 . n A 1 226 GLY 226 226 226 GLY GLY A0 . n A 1 227 GLY 227 227 227 GLY GLY A0 . n A 1 228 ASP 228 228 228 ASP ASP A0 . n A 1 229 PHE 229 229 229 PHE PHE A0 . n A 1 230 GLU 230 230 230 GLU GLU A0 . n A 1 231 LEU 231 231 231 LEU LEU A0 . n A 1 232 THR 232 232 232 THR THR A0 . n A 1 233 VAL 233 233 233 VAL VAL A0 . n A 1 234 GLY 234 234 234 GLY GLY A0 . n A 1 235 ARG 235 235 235 ARG ARG A0 . n A 1 236 ASP 236 236 236 ASP ASP A0 . n A 1 237 PHE 237 237 237 PHE PHE A0 . n A 1 238 SER 238 238 238 SER SER A0 . n A 1 239 ILE 239 239 239 ILE ILE A0 . n A 1 240 GLY 240 240 240 GLY GLY A0 . n A 1 241 TYR 241 241 241 TYR TYR A0 . n A 1 242 HIS 242 242 242 HIS HIS A0 . n A 1 243 ASP 243 243 243 ASP ASP A0 . n A 1 244 HIS 244 244 244 HIS HIS A0 . n A 1 245 ASP 245 245 245 ASP ASP A0 . n A 1 246 ALA 246 246 246 ALA ALA A0 . n A 1 247 GLN 247 247 247 GLN GLN A0 . n A 1 248 SER 248 248 248 SER SER A0 . n A 1 249 VAL 249 249 249 VAL VAL A0 . n A 1 250 HIS 250 250 250 HIS HIS A0 . n A 1 251 LEU 251 251 251 LEU LEU A0 . n A 1 252 TYR 252 252 252 TYR TYR A0 . n A 1 253 LEU 253 253 253 LEU LEU A0 . n A 1 254 GLN 254 254 254 GLN GLN A0 . n A 1 255 GLU 255 255 255 GLU GLU A0 . n A 1 256 SER 256 256 256 SER SER A0 . n A 1 257 MET 257 257 257 MET MET A0 . n A 1 258 THR 258 258 258 THR THR A0 . n A 1 259 PHE 259 259 259 PHE PHE A0 . n A 1 260 ARG 260 260 260 ARG ARG A0 . n A 1 261 CYS 261 261 261 CYS CYS A0 . n A 1 262 LEU 262 262 262 LEU LEU A0 . n A 1 263 GLY 263 263 263 GLY GLY A0 . n A 1 264 PRO 264 264 264 PRO PRO A0 . n A 1 265 GLU 265 265 265 GLU GLU A0 . n A 1 266 ALA 266 266 266 ALA ALA A0 . n A 1 267 ALA 267 267 267 ALA ALA A0 . n A 1 268 VAL 268 268 268 VAL VAL A0 . n A 1 269 PRO 269 269 269 PRO PRO A0 . n A 1 270 LEU 270 270 270 LEU LEU A0 . n A 1 271 ARG 271 271 271 ARG ARG A0 . n A 1 272 GLY 272 272 272 GLY GLY A0 . n A 1 273 LEU 273 273 ? ? ? A0 . n A 1 274 SER 274 274 ? ? ? A0 . n A 1 275 GLN 275 275 ? ? ? A0 . n A 1 276 ALA 276 276 ? ? ? A0 . n A 1 277 ALA 277 277 ? ? ? A0 . n A 1 278 THR 278 278 ? ? ? A0 . n A 1 279 LYS 279 279 ? ? ? A0 . n A 1 280 ALA 280 280 ? ? ? A0 . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9RY4 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9RY4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9RY4 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 68.96 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9RY4 _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method NONE _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.0033 ? 2018 ? f_bond_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.4629 ? 2744 ? f_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.0400 ? 317 ? f_chiral_restr ? ? ? 'ELECTRON MICROSCOPY' ? 0.0035 ? 360 ? f_plane_restr ? ? ? 'ELECTRON MICROSCOPY' ? 4.2610 ? 286 ? f_dihedral_angle_d ? ? ? # _struct.entry_id 9RY4 _struct.title 'Single particle reconstruction of Rhodospirillum rubrum encapsulin' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9RY4 _struct_keywords.text 'Encapsulin, nanocompartment, encapsulated ferritin, STRUCTURAL PROTEIN' _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ENCAP_RHORT _struct_ref.pdbx_db_accession Q2RVS0 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNDLMRDLAPISAKAWAEIETEARGTLTVTLAARKVVDFKGPLGWDASSVSLGRTEALAEEPKAAGSAAVVTVRKRAVQP LIELCVPFTLKRAELEAIARGASDADLDPVIEAARAIAIAEDRAVFHGFAAGGITGIGEASAEHALDLPADLADFPGVLV RALAVLRDRGVDGPYALVLGRTVYQQLMETTTPGGYPVLQHVRRLFEGPLIWAPGVDGAMLISQRGGDFELTVGRDFSIG YHDHDAQSVHLYLQESMTFRCLGPEAAVPLRGLSQAATKA ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9RY4 _struct_ref_seq.pdbx_strand_id A0 _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 280 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q2RVS0 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 280 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 280 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete icosahedral assembly' ? 60-meric 60 2 'icosahedral asymmetric unit' ? monomeric 1 3 'icosahedral pentamer' ? pentameric 5 4 'icosahedral 23 hexamer' ? hexameric 6 5 'icosahedral asymmetric unit, std point frame' ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 ;1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60 ; A 2 1 A 3 1,2,3,4,5 A 4 1,2,6,10,23,24 A 5 P A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? -0.30901330 -0.80901839 0.50000003 131.47758 0.80901928 -0.49999631 -0.30901698 -0.00127 0.49999859 0.30901930 0.80901698 -344.21426 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? 0.80901699 -0.49999770 0.30902071 81.25664 0.50000230 0.30901700 -0.80901558 212.73521 0.30901329 0.80901841 0.49999999 -131.47759 3 'point symmetry operation' ? ? 0.50000000 -0.30901099 0.80901928 -0.00177 0.30902300 -0.80901699 -0.49999629 425.46993 0.80901471 0.50000371 -0.30901700 -0.00030 4 'point symmetry operation' ? ? 0.50000000 0.30902299 0.80901469 -131.47887 -0.30901099 -0.80901700 0.50000372 344.21201 0.80901929 -0.49999629 -0.30901699 212.73472 5 'point symmetry operation' ? ? 0.80901700 0.50000229 0.30901328 -131.47777 -0.49999771 0.30901699 0.80901842 81.25713 0.30902070 -0.80901558 0.50000001 212.73491 6 'point symmetry operation' ? ? -0.50000282 0.30901843 0.80901470 81.25870 0.30901844 -0.80901414 0.50000373 212.73429 0.80901471 0.50000373 0.30901696 -131.47837 7 'point symmetry operation' ? ? -0.00000456 0.99999999 -0.00000461 0.00195 0.00000004 0.00000459 1.00000000 -0.00099 1.00000000 0.00000457 -0.00000003 -0.00096 8 'point symmetry operation' ? ? 0.49999718 0.30901556 -0.80901929 212.73739 0.30901561 0.80901981 0.49999629 -131.47759 0.80901927 -0.49999632 0.30901699 81.25666 9 'point symmetry operation' ? ? 0.30901700 -0.80901788 -0.49999855 425.47187 0.80901614 0.49999998 -0.30901927 0.00067 0.50000139 -0.30901470 0.80901701 -0.00078 10 'point symmetry operation' ? ? -0.30901699 -0.80901610 0.50000144 344.21357 0.80901789 -0.50000000 -0.30901467 212.73532 0.49999857 0.30901931 0.80901699 -131.47826 11 'point symmetry operation' ? ? 0.30902438 -0.80901330 -0.50000139 425.46993 -0.80901332 -0.50000737 0.30901470 425.47327 -0.50000139 0.30901470 -0.80901701 425.47278 12 'point symmetry operation' ? ? -0.30900960 -0.80902067 0.49999861 344.21357 -0.80902071 0.49999261 0.30901924 212.73788 -0.49999857 -0.30901931 -0.80901699 556.95026 13 'point symmetry operation' ? ? -0.50000000 0.30901103 0.80901927 81.25870 -0.30902300 0.80901696 -0.49999634 212.73650 -0.80901471 -0.50000373 -0.30901696 556.95037 14 'point symmetry operation' ? ? -0.00000457 0.99999999 0.00000453 0.00000 -0.00000004 0.00000454 -1.00000000 425.47104 -1.00000000 -0.00000457 0.00000003 425.47296 15 'point symmetry operation' ? ? 0.50000000 0.30902295 -0.80901472 212.73424 -0.30901105 -0.80901699 -0.50000368 556.94959 -0.80901927 0.49999632 -0.30901699 344.21534 16 'point symmetry operation' ? ? -0.80902156 0.49999488 -0.30901331 344.21534 0.49999489 0.30902151 -0.80901844 212.73643 -0.30901331 -0.80901843 -0.49999995 556.94958 17 'point symmetry operation' ? ? -0.50000283 0.30901838 -0.80901471 425.47181 0.30901838 -0.80901420 -0.50000366 425.47189 -0.80901472 -0.50000367 0.30901703 425.47228 18 'point symmetry operation' ? ? -0.49999718 -0.30901560 -0.80901926 556.94965 -0.30901561 -0.80901979 0.49999635 344.21515 -0.80901927 0.49999633 0.30901697 212.73726 19 'point symmetry operation' ? ? -0.80901243 -0.50000511 -0.30902067 556.95096 -0.50000512 0.30901248 0.80901556 81.26027 -0.30902068 0.80901556 -0.50000005 212.73710 20 'point symmetry operation' ? ? -1.00000000 -0.00000914 0.00000000 425.47393 -0.00000913 1.00000000 -0.00000007 0.00196 0.00000000 -0.00000005 -1.00000000 425.47201 21 'point symmetry operation' ? ? 0.00000457 -0.99999999 0.00000461 425.47004 0.00000004 -0.00000459 -1.00000000 425.47297 1.00000000 0.00000457 0.00000002 -0.00097 22 'point symmetry operation' ? ? -0.49999717 -0.30901556 0.80901929 212.73459 -0.30901556 -0.80901985 -0.49999626 556.94958 0.80901929 -0.49999627 0.30901702 81.25664 23 'point symmetry operation' ? ? -0.30901699 0.80901787 0.49999856 0.00011 -0.80901611 -0.50000000 0.30901933 425.47131 0.50000144 -0.30901467 0.80901699 -0.00080 24 'point symmetry operation' ? ? 0.30901700 0.80901610 -0.50000144 81.25841 -0.80901785 0.50000002 0.30901473 212.73665 0.49999861 0.30901929 0.80901697 -131.47826 25 'point symmetry operation' ? ? 0.50000283 -0.30901842 -0.80901470 344.21329 -0.30901838 0.80901418 -0.50000371 212.73768 0.80901472 0.50000368 0.30901699 -131.47837 26 'point symmetry operation' ? ? -0.30901700 0.80901785 -0.49999861 212.73551 -0.80901614 -0.50000000 -0.30901923 556.95036 -0.50000139 0.30901474 0.80901699 81.25869 27 'point symmetry operation' ? ? 0.00000457 -0.00000002 -1.00000000 425.47102 -1.00000001 -0.00000453 -0.00000456 425.47393 -0.00000454 1.00000000 -0.00000004 0.00097 28 'point symmetry operation' ? ? -0.30900960 -0.80902070 -0.49999856 556.94897 -0.80902068 0.49999261 -0.30901932 344.21692 0.49999861 0.30901924 -0.80901700 212.73582 29 'point symmetry operation' ? ? -0.80901242 -0.50000510 0.30902071 425.47131 -0.50000510 0.30901237 -0.80901561 425.47377 0.30902070 -0.80901560 -0.49999995 425.47090 30 'point symmetry operation' ? ? -0.80901699 0.49999772 0.30902068 212.73569 -0.50000230 -0.30901705 -0.80901555 556.95026 -0.30901329 -0.80901838 0.50000005 344.21357 31 'point symmetry operation' ? ? 0.80901243 0.50000509 -0.30902071 0.00068 0.50000512 -0.30901243 0.80901558 -0.00176 0.30902068 -0.80901559 -0.49999999 425.47091 32 'point symmetry operation' ? ? 0.80901699 -0.49999772 -0.30902067 212.73630 0.50000228 0.30901699 0.80901559 -131.47826 -0.30901331 -0.80901840 0.50000001 344.21359 33 'point symmetry operation' ? ? 0.30901699 -0.80901785 0.49999862 212.73647 0.80901611 0.50000002 0.30901929 -131.47838 -0.50000144 0.30901472 0.80901698 81.25871 34 'point symmetry operation' ? ? -0.00000457 0.00000003 1.00000000 0.00096 1.00000001 0.00000461 0.00000456 -0.00195 -0.00000459 1.00000000 -0.00000004 0.00099 35 'point symmetry operation' ? ? 0.30900961 0.80902070 0.49999855 -131.47699 0.80902071 -0.49999259 0.30901926 81.25507 0.49999857 0.30901927 -0.80901702 212.73583 36 'point symmetry operation' ? ? -0.50000000 -0.30902295 0.80901472 212.73774 0.30901099 0.80901703 0.50000365 -131.47758 -0.80901929 0.49999627 -0.30901702 344.21536 37 'point symmetry operation' ? ? -0.30902439 0.80901331 0.50000138 0.00206 0.80901329 0.50000739 -0.30901476 -0.00125 -0.50000144 0.30901467 -0.80901699 425.47279 38 'point symmetry operation' ? ? 0.30900960 0.80902067 -0.49999862 81.25841 0.80902068 -0.49999263 -0.30901929 212.73414 -0.49999861 -0.30901929 -0.80901697 556.95026 39 'point symmetry operation' ? ? 0.50000000 -0.30901104 -0.80901927 344.21329 0.30902295 -0.80901700 0.49999632 212.73552 -0.80901472 -0.50000368 -0.30901699 556.95037 40 'point symmetry operation' ? ? 0.00000456 -0.99999999 -0.00000453 425.47198 -0.00000004 -0.00000454 1.00000000 0.00097 -1.00000000 -0.00000457 -0.00000002 425.47297 41 'point symmetry operation' ? ? 0.00000457 0.00000002 1.00000000 -0.00098 -1.00000001 -0.00000461 0.00000457 425.47200 0.00000459 -1.00000000 0.00000004 425.47101 42 'point symmetry operation' ? ? 0.30901699 0.80901613 0.50000138 -131.47819 -0.80901789 0.49999998 -0.30901470 344.21378 -0.49999857 -0.30901927 0.80901702 212.73617 43 'point symmetry operation' ? ? 0.80901699 0.50000228 -0.30901332 -0.00127 -0.49999773 0.30901700 -0.80901840 425.47181 -0.30902068 0.80901559 0.49999999 0.00108 44 'point symmetry operation' ? ? 0.80902156 -0.49999489 -0.30901328 212.73315 -0.49999489 -0.30902156 -0.80901841 556.95025 0.30901331 0.80901840 -0.50000001 81.25841 45 'point symmetry operation' ? ? 0.30902439 -0.80901328 0.50000143 212.73333 -0.80901329 -0.50000741 -0.30901472 556.95037 0.50000143 -0.30901472 -0.80901698 344.21328 46 'point symmetry operation' ? ? 0.80901242 0.50000512 0.30902067 -131.47898 0.50000510 -0.30901242 -0.80901559 344.21172 -0.30902070 0.80901558 -0.50000001 212.73709 47 'point symmetry operation' ? ? 1.00000000 0.00000914 0.00000000 -0.00194 0.00000913 -1.00000000 0.00000000 425.47005 0.00000000 0.00000000 -1.00000000 425.47200 48 'point symmetry operation' ? ? 0.80902156 -0.49999488 0.30901331 81.25664 -0.49999491 -0.30902157 0.80901840 212.73559 -0.30901329 -0.80901841 -0.49999999 556.94958 49 'point symmetry operation' ? ? 0.50000282 -0.30901838 0.80901472 0.00018 -0.30901844 0.80901417 0.50000368 0.00012 -0.80901471 -0.50000371 0.30901700 425.47229 50 'point symmetry operation' ? ? 0.49999717 0.30901560 0.80901926 -131.47767 0.30901556 0.80901982 -0.49999633 81.25685 -0.80901929 0.49999629 0.30901699 212.73727 51 'point symmetry operation' ? ? -0.50000000 0.30901099 -0.80901929 425.47375 -0.30902295 0.80901703 0.49999627 0.00205 0.80901472 0.50000367 -0.30901703 -0.00028 52 'point symmetry operation' ? ? -0.50000000 -0.30902300 -0.80901469 556.95085 0.30901105 0.80901696 -0.50000374 81.25999 0.80901927 -0.49999633 -0.30901697 212.73473 53 'point symmetry operation' ? ? -0.80901699 -0.50000229 -0.30901327 556.94976 0.49999773 -0.30901704 -0.80901838 344.21487 0.30902068 -0.80901556 0.50000005 212.73490 54 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 425.47198 0.00000000 -1.00000000 0.00000007 425.47198 0.00000000 0.00000005 1.00000000 -0.00001 55 'point symmetry operation' ? ? -0.80901699 0.49999771 -0.30902070 344.21534 -0.50000228 -0.30901694 0.80901562 212.73676 0.30901331 0.80901843 0.49999995 -131.47759 56 'point symmetry operation' ? ? -0.30901700 -0.80901613 -0.50000138 556.95018 0.80901785 -0.50000000 0.30901475 81.25822 -0.49999861 -0.30901924 0.80901700 212.73618 57 'point symmetry operation' ? ? -0.80901700 -0.50000227 0.30901332 425.47325 0.49999771 -0.30901694 0.80901843 0.00017 -0.30902070 0.80901560 0.49999995 0.00109 58 'point symmetry operation' ? ? -0.80902156 0.49999490 0.30901328 212.73883 0.49999491 0.30902161 0.80901838 -131.47827 0.30901329 0.80901838 -0.50000005 81.25843 59 'point symmetry operation' ? ? -0.30902438 0.80901328 -0.50000144 212.73866 0.80901332 0.50000739 0.30901466 -131.47837 0.50000139 -0.30901474 -0.80901699 344.21330 60 'point symmetry operation' ? ? -0.00000457 -0.00000003 -1.00000000 425.47297 1.00000001 0.00000453 -0.00000457 0.00001 0.00000454 -1.00000000 0.00000004 425.47102 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 MET A 5 ? ALA A 9 ? MET A0 5 ALA A0 9 5 ? 5 HELX_P HELX_P2 AA2 SER A 12 ? LEU A 31 ? SER A0 12 LEU A0 31 1 ? 20 HELX_P HELX_P3 AA3 ALA A 32 ? VAL A 36 ? ALA A0 32 VAL A0 36 5 ? 5 HELX_P HELX_P4 AA4 ARG A 92 ? GLY A 101 ? ARG A0 92 GLY A0 101 1 ? 10 HELX_P HELX_P5 AA5 LEU A 107 ? GLY A 128 ? LEU A0 107 GLY A0 128 1 ? 22 HELX_P HELX_P6 AA6 GLY A 136 ? SER A 141 ? GLY A0 136 SER A0 141 1 ? 6 HELX_P HELX_P7 AA7 ALA A 142 ? ALA A 145 ? ALA A0 142 ALA A0 145 5 ? 4 HELX_P HELX_P8 AA8 ASP A 151 ? ALA A 153 ? ASP A0 151 ALA A0 153 5 ? 3 HELX_P HELX_P9 AA9 ASP A 154 ? ARG A 169 ? ASP A0 154 ARG A0 169 1 ? 16 HELX_P HELX_P10 AB1 GLY A 180 ? GLU A 189 ? GLY A0 180 GLU A0 189 1 ? 10 HELX_P HELX_P11 AB2 THR A 192 ? TYR A 196 ? THR A0 192 TYR A0 196 5 ? 5 HELX_P HELX_P12 AB3 PRO A 197 ? LEU A 205 ? PRO A0 197 LEU A0 205 1 ? 9 HELX_P HELX_P13 AB4 GLY A 263 ? GLU A 265 ? GLY A0 263 GLU A0 265 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? AA3 ? 2 ? AA4 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA4 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASP A 38 ? LYS A 40 ? ASP A0 38 LYS A0 40 AA1 2 PHE A 229 ? VAL A 233 ? PHE A0 229 VAL A0 233 AA1 3 SER A 248 ? CYS A 261 ? SER A0 248 CYS A0 261 AA1 4 ILE A 82 ? LYS A 91 ? ILE A0 82 LYS A0 91 AA2 1 ASP A 38 ? LYS A 40 ? ASP A0 38 LYS A0 40 AA2 2 PHE A 229 ? VAL A 233 ? PHE A0 229 VAL A0 233 AA2 3 SER A 248 ? CYS A 261 ? SER A0 248 CYS A0 261 AA2 4 SER A 238 ? HIS A 244 ? SER A0 238 HIS A0 244 AA3 1 SER A 49 ? ALA A 57 ? SER A0 49 ALA A0 57 AA3 2 ARG A 74 ? PRO A 80 ? ARG A0 74 PRO A0 80 AA4 1 LEU A 146 ? ASP A 147 ? LEU A0 146 ASP A0 147 AA4 2 ALA A 267 ? ARG A 271 ? ALA A0 267 ARG A0 271 AA4 3 ALA A 219 ? SER A 223 ? ALA A0 219 SER A0 223 AA4 4 TYR A 175 ? LEU A 179 ? TYR A0 175 LEU A0 179 AA4 5 LEU A 210 ? TRP A 212 ? LEU A0 210 TRP A0 212 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LYS A 40 ? N LYS A0 40 O LEU A 231 ? O LEU A0 231 AA1 2 3 N THR A 232 ? N THR A0 232 O THR A 258 ? O THR A0 258 AA1 3 4 O GLU A 255 ? O GLU A0 255 N LEU A 84 ? N LEU A0 84 AA2 1 2 N LYS A 40 ? N LYS A0 40 O LEU A 231 ? O LEU A0 231 AA2 2 3 N THR A 232 ? N THR A0 232 O THR A 258 ? O THR A0 258 AA2 3 4 O HIS A 250 ? O HIS A0 250 N ASP A 243 ? N ASP A0 243 AA3 1 2 N GLU A 56 ? N GLU A0 56 O LYS A 75 ? O LYS A0 75 AA4 1 2 N LEU A 146 ? N LEU A0 146 O PRO A 269 ? O PRO A0 269 AA4 2 3 O LEU A 270 ? O LEU A0 270 N ALA A 219 ? N ALA A0 219 AA4 3 4 O ILE A 222 ? O ILE A0 222 N ALA A 176 ? N ALA A0 176 AA4 4 5 N LEU A 177 ? N LEU A0 177 O ILE A 211 ? O ILE A0 211 # _pdbx_entry_details.entry_id 9RY4 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A0 236 ? ? -69.29 -179.06 2 1 ASP A0 245 ? ? -127.13 -169.43 # _pdbx_point_symmetry.entry_id 9RY4 _pdbx_point_symmetry.Schoenflies_symbol I # _space_group_symop.id 1 _space_group_symop.operation_xyz x,y,z # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9RY4 _em_3d_fitting.method ? _em_3d_fitting.target_criteria 'Cross correlation' _em_3d_fitting.details 'Real space refinement in phenix' _em_3d_fitting.overall_b_value 70 _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'AB INITIO MODEL' # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id . _em_3d_fitting_list.pdb_chain_id . _em_3d_fitting_list.pdb_chain_residue_range . _em_3d_fitting_list.details 'ModelAngelo model from sequence' _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name Other _em_3d_fitting_list.type 'in silico model' _em_3d_fitting_list.accession_code ? _em_3d_fitting_list.initial_refinement_model_id ? # _em_3d_reconstruction.entry_id 9RY4 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 639134 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details 'Sample in 50 mM Tris.HCl pH8, 150 mM NaCl' _em_buffer.pH 8 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Rhodospirillum rubrum encapsulin' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9RY4 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 600 _em_imaging.nominal_defocus_max 1600 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 200 _em_sample_support.grid_type Quantifoil _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 9RY4 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 281 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details 'blot force 5, wait time 10 s, and blot time 3 seconds' # _em_experiment.entry_id 9RY4 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 9RY4 _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry I # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A0 GLU 60 ? A GLU 60 2 1 Y 1 A0 GLU 61 ? A GLU 61 3 1 Y 1 A0 PRO 62 ? A PRO 62 4 1 Y 1 A0 LYS 63 ? A LYS 63 5 1 Y 1 A0 ALA 64 ? A ALA 64 6 1 Y 1 A0 ALA 65 ? A ALA 65 7 1 Y 1 A0 GLY 66 ? A GLY 66 8 1 Y 1 A0 SER 67 ? A SER 67 9 1 Y 1 A0 ALA 68 ? A ALA 68 10 1 Y 1 A0 LEU 273 ? A LEU 273 11 1 Y 1 A0 SER 274 ? A SER 274 12 1 Y 1 A0 GLN 275 ? A GLN 275 13 1 Y 1 A0 ALA 276 ? A ALA 276 14 1 Y 1 A0 ALA 277 ? A ALA 277 15 1 Y 1 A0 THR 278 ? A THR 278 16 1 Y 1 A0 LYS 279 ? A LYS 279 17 1 Y 1 A0 ALA 280 ? A ALA 280 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_admin.current_status REL _em_admin.deposition_date 2025-07-14 _em_admin.deposition_site PDBE _em_admin.entry_id 9RY4 _em_admin.last_update 2026-07-22 _em_admin.map_release_date 2026-07-22 _em_admin.title 'Single particle reconstruction of Rhodospirillum rubrum encapsulin' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 150 mM NaCl 1 'Sodium Chloride' 1 50 mM C4H11NO3 2 Tris # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 1.8 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 1085 _em_entity_assembly_naturalsource.organism 'Rhodospirillum rubrum' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 469008 _em_entity_assembly_recombinant.organism 'Escherichia coli BL21(DE3)' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 42 _em_image_recording.details ? _em_image_recording.detector_mode SUPER-RESOLUTION _em_image_recording.film_or_detector_model 'FEI FALCON III (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # _em_particle_selection.details 'Blob picker' _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 3438531 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC 4.7 ? 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU ? ? MASKING ? 3 ? ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? cryoSPARC 4.7 ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? 'UCSF ChimeraX' 1.10 ? OTHER ? 8 ? ? ? ? ? ? 'MODEL REFINEMENT' ? 9 ? 1 ? PHENIX 1.21.2_5419 ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? cryoSPARC 4.7 ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? cryoSPARC 4.7 ? CLASSIFICATION ? 12 1 ? ? cryoSPARC 4.7 ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC 4.7 ? # _em_specimen.concentration 3 _em_specimen.details 'Sample purified by Size-exclusion on Sephacryl S400' _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Biotechnology and Biological Sciences Research Council (BBSRC)' _pdbx_audit_support.country 'United Kingdom' _pdbx_audit_support.grant_number 2306768 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code ? # _space_group.crystal_system triclinic _space_group.name_H-M_alt 'P 1' _space_group.IT_number 1 _space_group.name_Hall 'P 1' _space_group.id 1 # _atom_sites.entry_id 9RY4 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #