data_9RZF # _entry.id 9RZF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.408 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9RZF pdb_00009rzf 10.2210/pdb9rzf/pdb WWPDB D_1292149325 ? ? EMDB EMD-54402 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-07-30 ? 2 'EM metadata' 1 0 2025-07-30 ? 3 'Additional map' 1 0 2025-07-30 ? 4 FSC 1 0 2025-07-30 ? 5 'Half map' 1 0 2025-07-30 1 6 'Half map' 1 0 2025-07-30 2 7 Image 1 0 2025-07-30 ? 8 Mask 1 0 2025-07-30 ? 9 'Primary map' 1 0 2025-07-30 ? 10 'Structure model' 1 1 2025-08-13 ? 11 'EM metadata' 1 1 2025-08-13 ? 12 'Structure model' 1 2 2025-09-24 ? 13 'Structure model' 1 3 2025-11-05 ? 14 'Structure model' 1 4 2025-11-19 ? 15 'Structure model' 1 5 2025-12-24 ? 16 'EM metadata' 1 2 2025-12-24 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Additional map' repository 'Initial release' ? ? 4 4 FSC repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 'Half map' repository 'Initial release' ? ? 7 7 Image repository 'Initial release' ? ? 8 8 Mask repository 'Initial release' ? ? 9 9 'Primary map' repository 'Initial release' ? ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 10 'Structure model' 'Data collection' 2 10 'Structure model' 'Database references' 3 11 'EM metadata' 'Database references' 4 11 'EM metadata' 'Experimental summary' 5 12 'Structure model' 'Data collection' 6 12 'Structure model' 'Database references' 7 12 'Structure model' 'Source and taxonomy' 8 12 'Structure model' 'Structure summary' 9 13 'Structure model' 'Data collection' 10 13 'Structure model' 'Database references' 11 14 'Structure model' 'Data collection' 12 14 'Structure model' 'Database references' 13 15 'Structure model' 'Data collection' 14 15 'Structure model' 'Database references' 15 16 'EM metadata' 'Database references' 16 16 'EM metadata' 'Experimental summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 10 'Structure model' em_admin 2 10 'Structure model' struct_ref 3 10 'Structure model' struct_ref_seq 4 10 'Structure model' struct_ref_seq_dif 5 11 'EM metadata' em_admin 6 11 'EM metadata' struct_ref 7 11 'EM metadata' struct_ref_seq 8 11 'EM metadata' struct_ref_seq_dif 9 12 'Structure model' citation 10 12 'Structure model' em_admin 11 12 'Structure model' em_entity_assembly 12 12 'Structure model' em_entity_assembly_naturalsource 13 12 'Structure model' em_entity_assembly_recombinant 14 12 'Structure model' entity 15 12 'Structure model' entity_src_gen 16 12 'Structure model' entity_src_nat 17 13 'Structure model' citation 18 13 'Structure model' citation_author 19 13 'Structure model' em_admin 20 14 'Structure model' citation 21 14 'Structure model' citation_author 22 14 'Structure model' em_admin 23 15 'Structure model' citation 24 15 'Structure model' em_admin 25 16 'EM metadata' citation 26 16 'EM metadata' em_admin # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 10 'Structure model' '_em_admin.last_update' 2 10 'Structure model' '_struct_ref.db_code' 3 10 'Structure model' '_struct_ref.pdbx_db_accession' 4 10 'Structure model' '_struct_ref.pdbx_seq_one_letter_code' 5 10 'Structure model' '_struct_ref_seq.pdbx_db_accession' 6 10 'Structure model' '_struct_ref_seq_dif.db_mon_id' 7 10 'Structure model' '_struct_ref_seq_dif.details' 8 10 'Structure model' '_struct_ref_seq_dif.mon_id' 9 10 'Structure model' '_struct_ref_seq_dif.pdbx_auth_seq_num' 10 10 'Structure model' '_struct_ref_seq_dif.pdbx_seq_db_accession_code' 11 10 'Structure model' '_struct_ref_seq_dif.pdbx_seq_db_seq_num' 12 10 'Structure model' '_struct_ref_seq_dif.seq_num' 13 11 'EM metadata' '_em_admin.last_update' 14 11 'EM metadata' '_struct_ref.db_code' 15 11 'EM metadata' '_struct_ref.pdbx_db_accession' 16 11 'EM metadata' '_struct_ref.pdbx_seq_one_letter_code' 17 11 'EM metadata' '_struct_ref_seq.pdbx_db_accession' 18 11 'EM metadata' '_struct_ref_seq_dif.db_mon_id' 19 11 'EM metadata' '_struct_ref_seq_dif.details' 20 11 'EM metadata' '_struct_ref_seq_dif.mon_id' 21 11 'EM metadata' '_struct_ref_seq_dif.pdbx_auth_seq_num' 22 11 'EM metadata' '_struct_ref_seq_dif.pdbx_seq_db_accession_code' 23 11 'EM metadata' '_struct_ref_seq_dif.pdbx_seq_db_seq_num' 24 11 'EM metadata' '_struct_ref_seq_dif.seq_num' 25 12 'Structure model' '_citation.country' 26 12 'Structure model' '_citation.journal_abbrev' 27 12 'Structure model' '_citation.journal_id_CSD' 28 12 'Structure model' '_citation.journal_id_ISSN' 29 12 'Structure model' '_citation.title' 30 12 'Structure model' '_em_admin.last_update' 31 12 'Structure model' '_em_entity_assembly.source' 32 12 'Structure model' '_em_entity_assembly_naturalsource.ncbi_tax_id' 33 12 'Structure model' '_em_entity_assembly_naturalsource.organ' 34 12 'Structure model' '_em_entity_assembly_naturalsource.organism' 35 12 'Structure model' '_entity.details' 36 12 'Structure model' '_entity.pdbx_mutation' 37 12 'Structure model' '_entity.src_method' 38 13 'Structure model' '_citation.country' 39 13 'Structure model' '_citation.journal_abbrev' 40 13 'Structure model' '_citation.journal_id_ASTM' 41 13 'Structure model' '_citation.journal_id_CSD' 42 13 'Structure model' '_citation.journal_id_ISSN' 43 13 'Structure model' '_citation.pdbx_database_id_DOI' 44 13 'Structure model' '_citation.title' 45 13 'Structure model' '_citation.year' 46 13 'Structure model' '_em_admin.last_update' 47 14 'Structure model' '_citation.pdbx_database_id_PubMed' 48 14 'Structure model' '_citation.title' 49 14 'Structure model' '_em_admin.last_update' 50 15 'Structure model' '_citation.journal_volume' 51 15 'Structure model' '_citation.page_first' 52 15 'Structure model' '_citation.page_last' 53 15 'Structure model' '_em_admin.last_update' 54 16 'EM metadata' '_citation.journal_volume' 55 16 'EM metadata' '_citation.page_first' 56 16 'EM metadata' '_citation.page_last' 57 16 'EM metadata' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9RZF _pdbx_database_status.recvd_initial_deposition_date 2025-07-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB '9EUU is the structure of the recombinant 1B fibril seeds used to induce pathology in the M83+/- mouse.' 9EUU unspecified EMDB 'Structure of in-vivo formed alpha-synuclein fibrils purified from a M83+/- mouse brain injected with recombinant 1B fibrils' EMD-54402 'associated EM volume' # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 2 henning.stahlberg@epfl.ch Henning Stahlberg ? 'principal investigator/group leader' 0000-0002-1185-4592 3 francois.ichas@inserm.fr Francois Ichas ? 'principal investigator/group leader' 0000-0001-8184-5248 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'van den Heuvel, L.' 1 0000-0001-9168-8450 'Burger, D.' 2 0000-0002-4181-2588 'Kashyrina, M.' 3 0000-0001-7266-6387 'de La Seigliere, H.' 4 0009-0007-2828-5780 'Lewis, A.J.' 5 0000-0001-7257-5848 'De Nuccio, F.' 6 0000-0003-2041-0149 'Mohammed, I.' 7 0000-0001-8177-1349 'Verchere, J.' 8 ? 'Feuillie, C.' 9 0000-0003-2222-8658 'Berbon, M.' 10 0000-0003-3235-253X 'Arotcarena, M.' 11 0000-0002-1306-3700 'Retailleau, A.' 12 0000-0001-6367-1889 'Bezard, E.' 13 0000-0002-0410-4638 'Canron, M.' 14 0000-0003-1032-7632 'Meissner, W.G.' 15 0000-0003-2172-7527 'Loquet, A.' 16 0000-0001-7176-7813 'Bousset, L.' 17 0000-0002-0433-4337 'Poujol, C.' 18 0000-0002-5222-9064 'Nilsson, K.P.R.' 19 ? 'Laferriere, F.' 20 0000-0002-0753-5505 'Baron, T.' 21 0000-0001-5396-7707 'Lofrumento, D.D.' 22 0000-0002-0106-3615 'De Giorgi, F.' 23 0000-0003-4850-3582 'Stahlberg, H.' 24 0000-0002-1185-4592 'Ichas, F.' 25 0000-0001-8184-5248 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nature _citation.journal_id_ASTM NATUAS _citation.journal_id_CSD 0006 _citation.journal_id_ISSN 1476-4687 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 648 _citation.language ? _citation.page_first 409 _citation.page_last 417 _citation.title 'Synthetic alpha-synuclein fibrils replicate in mice causing MSA-like pathology.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41586-025-09698-1 _citation.pdbx_database_id_PubMed 41193804 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Burger, D.' 1 ? primary 'Kashyrina, M.' 2 ? primary 'van den Heuvel, L.' 3 ? primary 'de La Seigliere, H.' 4 ? primary 'Lewis, A.J.' 5 ? primary 'De Nuccio, F.' 6 ? primary 'Mohammed, I.' 7 ? primary 'Verchere, J.' 8 ? primary 'Feuillie, C.' 9 ? primary 'Berbon, M.' 10 ? primary 'Arotcarena, M.L.' 11 ? primary 'Retailleau, A.' 12 ? primary 'Bezard, E.' 13 ? primary 'Canron, M.H.' 14 ? primary 'Meissner, W.G.' 15 ? primary 'Loquet, A.' 16 ? primary 'Bousset, L.' 17 ? primary 'Poujol, C.' 18 ? primary 'Nilsson, K.P.R.' 19 ? primary 'Laferriere, F.' 20 ? primary 'Baron, T.' 21 ? primary 'Lofrumento, D.D.' 22 ? primary 'De Giorgi, F.' 23 ? primary 'Stahlberg, H.' 24 ? primary 'Ichas, F.' 25 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Alpha-synuclein _entity.formula_weight 6037.906 _entity.pdbx_number_of_molecules 6 _entity.pdbx_ec ? _entity.pdbx_mutation A53T _entity.pdbx_fragment ? _entity.details 'The fibril was purified from a mouse, this mouse model expresses a humanised version of the alpha-synuclein protein.' # _entity_name_com.entity_id 1 _entity_name_com.name 'Non-A beta component of AD amyloid,Non-A4 component of amyloid precursor,NACP' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code VLYVGSKTKEGVVHGVTTVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKK _entity_poly.pdbx_seq_one_letter_code_can VLYVGSKTKEGVVHGVTTVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKK _entity_poly.pdbx_strand_id A,B,C,D,E,F _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 LEU n 1 3 TYR n 1 4 VAL n 1 5 GLY n 1 6 SER n 1 7 LYS n 1 8 THR n 1 9 LYS n 1 10 GLU n 1 11 GLY n 1 12 VAL n 1 13 VAL n 1 14 HIS n 1 15 GLY n 1 16 VAL n 1 17 THR n 1 18 THR n 1 19 VAL n 1 20 ALA n 1 21 GLU n 1 22 LYS n 1 23 THR n 1 24 LYS n 1 25 GLU n 1 26 GLN n 1 27 VAL n 1 28 THR n 1 29 ASN n 1 30 VAL n 1 31 GLY n 1 32 GLY n 1 33 ALA n 1 34 VAL n 1 35 VAL n 1 36 THR n 1 37 GLY n 1 38 VAL n 1 39 THR n 1 40 ALA n 1 41 VAL n 1 42 ALA n 1 43 GLN n 1 44 LYS n 1 45 THR n 1 46 VAL n 1 47 GLU n 1 48 GLY n 1 49 ALA n 1 50 GLY n 1 51 SER n 1 52 ILE n 1 53 ALA n 1 54 ALA n 1 55 ALA n 1 56 THR n 1 57 GLY n 1 58 PHE n 1 59 VAL n 1 60 LYS n 1 61 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 61 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'SNCA, NACP, PARK1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'Hemizygous A53T alpha-synuclein transgenic line M83' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ Brain _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'house mouse' _entity_src_gen.pdbx_host_org_scientific_name 'Mus musculus' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 10090 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Hemizygous A53T alpha-synuclein transgenic line M83' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 37 37 VAL VAL A . n A 1 2 LEU 2 38 38 LEU LEU A . n A 1 3 TYR 3 39 39 TYR TYR A . n A 1 4 VAL 4 40 40 VAL VAL A . n A 1 5 GLY 5 41 41 GLY GLY A . n A 1 6 SER 6 42 42 SER SER A . n A 1 7 LYS 7 43 43 LYS LYS A . n A 1 8 THR 8 44 44 THR THR A . n A 1 9 LYS 9 45 45 LYS LYS A . n A 1 10 GLU 10 46 46 GLU GLU A . n A 1 11 GLY 11 47 47 GLY GLY A . n A 1 12 VAL 12 48 48 VAL VAL A . n A 1 13 VAL 13 49 49 VAL VAL A . n A 1 14 HIS 14 50 50 HIS HIS A . n A 1 15 GLY 15 51 51 GLY GLY A . n A 1 16 VAL 16 52 52 VAL VAL A . n A 1 17 THR 17 53 53 THR THR A . n A 1 18 THR 18 54 54 THR THR A . n A 1 19 VAL 19 55 55 VAL VAL A . n A 1 20 ALA 20 56 56 ALA ALA A . n A 1 21 GLU 21 57 57 GLU GLU A . n A 1 22 LYS 22 58 58 LYS LYS A . n A 1 23 THR 23 59 59 THR THR A . n A 1 24 LYS 24 60 60 LYS LYS A . n A 1 25 GLU 25 61 61 GLU GLU A . n A 1 26 GLN 26 62 62 GLN GLN A . n A 1 27 VAL 27 63 63 VAL VAL A . n A 1 28 THR 28 64 64 THR THR A . n A 1 29 ASN 29 65 65 ASN ASN A . n A 1 30 VAL 30 66 66 VAL VAL A . n A 1 31 GLY 31 67 67 GLY GLY A . n A 1 32 GLY 32 68 68 GLY GLY A . n A 1 33 ALA 33 69 69 ALA ALA A . n A 1 34 VAL 34 70 70 VAL VAL A . n A 1 35 VAL 35 71 71 VAL VAL A . n A 1 36 THR 36 72 72 THR THR A . n A 1 37 GLY 37 73 73 GLY GLY A . n A 1 38 VAL 38 74 74 VAL VAL A . n A 1 39 THR 39 75 75 THR THR A . n A 1 40 ALA 40 76 76 ALA ALA A . n A 1 41 VAL 41 77 77 VAL VAL A . n A 1 42 ALA 42 78 78 ALA ALA A . n A 1 43 GLN 43 79 79 GLN GLN A . n A 1 44 LYS 44 80 80 LYS LYS A . n A 1 45 THR 45 81 81 THR THR A . n A 1 46 VAL 46 82 82 VAL VAL A . n A 1 47 GLU 47 83 83 GLU GLU A . n A 1 48 GLY 48 84 84 GLY GLY A . n A 1 49 ALA 49 85 85 ALA ALA A . n A 1 50 GLY 50 86 86 GLY GLY A . n A 1 51 SER 51 87 87 SER SER A . n A 1 52 ILE 52 88 88 ILE ILE A . n A 1 53 ALA 53 89 89 ALA ALA A . n A 1 54 ALA 54 90 90 ALA ALA A . n A 1 55 ALA 55 91 91 ALA ALA A . n A 1 56 THR 56 92 92 THR THR A . n A 1 57 GLY 57 93 93 GLY GLY A . n A 1 58 PHE 58 94 94 PHE PHE A . n A 1 59 VAL 59 95 95 VAL VAL A . n A 1 60 LYS 60 96 96 LYS LYS A . n A 1 61 LYS 61 97 97 LYS LYS A . n B 1 1 VAL 1 37 37 VAL VAL B . n B 1 2 LEU 2 38 38 LEU LEU B . n B 1 3 TYR 3 39 39 TYR TYR B . n B 1 4 VAL 4 40 40 VAL VAL B . n B 1 5 GLY 5 41 41 GLY GLY B . n B 1 6 SER 6 42 42 SER SER B . n B 1 7 LYS 7 43 43 LYS LYS B . n B 1 8 THR 8 44 44 THR THR B . n B 1 9 LYS 9 45 45 LYS LYS B . n B 1 10 GLU 10 46 46 GLU GLU B . n B 1 11 GLY 11 47 47 GLY GLY B . n B 1 12 VAL 12 48 48 VAL VAL B . n B 1 13 VAL 13 49 49 VAL VAL B . n B 1 14 HIS 14 50 50 HIS HIS B . n B 1 15 GLY 15 51 51 GLY GLY B . n B 1 16 VAL 16 52 52 VAL VAL B . n B 1 17 THR 17 53 53 THR THR B . n B 1 18 THR 18 54 54 THR THR B . n B 1 19 VAL 19 55 55 VAL VAL B . n B 1 20 ALA 20 56 56 ALA ALA B . n B 1 21 GLU 21 57 57 GLU GLU B . n B 1 22 LYS 22 58 58 LYS LYS B . n B 1 23 THR 23 59 59 THR THR B . n B 1 24 LYS 24 60 60 LYS LYS B . n B 1 25 GLU 25 61 61 GLU GLU B . n B 1 26 GLN 26 62 62 GLN GLN B . n B 1 27 VAL 27 63 63 VAL VAL B . n B 1 28 THR 28 64 64 THR THR B . n B 1 29 ASN 29 65 65 ASN ASN B . n B 1 30 VAL 30 66 66 VAL VAL B . n B 1 31 GLY 31 67 67 GLY GLY B . n B 1 32 GLY 32 68 68 GLY GLY B . n B 1 33 ALA 33 69 69 ALA ALA B . n B 1 34 VAL 34 70 70 VAL VAL B . n B 1 35 VAL 35 71 71 VAL VAL B . n B 1 36 THR 36 72 72 THR THR B . n B 1 37 GLY 37 73 73 GLY GLY B . n B 1 38 VAL 38 74 74 VAL VAL B . n B 1 39 THR 39 75 75 THR THR B . n B 1 40 ALA 40 76 76 ALA ALA B . n B 1 41 VAL 41 77 77 VAL VAL B . n B 1 42 ALA 42 78 78 ALA ALA B . n B 1 43 GLN 43 79 79 GLN GLN B . n B 1 44 LYS 44 80 80 LYS LYS B . n B 1 45 THR 45 81 81 THR THR B . n B 1 46 VAL 46 82 82 VAL VAL B . n B 1 47 GLU 47 83 83 GLU GLU B . n B 1 48 GLY 48 84 84 GLY GLY B . n B 1 49 ALA 49 85 85 ALA ALA B . n B 1 50 GLY 50 86 86 GLY GLY B . n B 1 51 SER 51 87 87 SER SER B . n B 1 52 ILE 52 88 88 ILE ILE B . n B 1 53 ALA 53 89 89 ALA ALA B . n B 1 54 ALA 54 90 90 ALA ALA B . n B 1 55 ALA 55 91 91 ALA ALA B . n B 1 56 THR 56 92 92 THR THR B . n B 1 57 GLY 57 93 93 GLY GLY B . n B 1 58 PHE 58 94 94 PHE PHE B . n B 1 59 VAL 59 95 95 VAL VAL B . n B 1 60 LYS 60 96 96 LYS LYS B . n B 1 61 LYS 61 97 97 LYS LYS B . n C 1 1 VAL 1 37 37 VAL VAL C . n C 1 2 LEU 2 38 38 LEU LEU C . n C 1 3 TYR 3 39 39 TYR TYR C . n C 1 4 VAL 4 40 40 VAL VAL C . n C 1 5 GLY 5 41 41 GLY GLY C . n C 1 6 SER 6 42 42 SER SER C . n C 1 7 LYS 7 43 43 LYS LYS C . n C 1 8 THR 8 44 44 THR THR C . n C 1 9 LYS 9 45 45 LYS LYS C . n C 1 10 GLU 10 46 46 GLU GLU C . n C 1 11 GLY 11 47 47 GLY GLY C . n C 1 12 VAL 12 48 48 VAL VAL C . n C 1 13 VAL 13 49 49 VAL VAL C . n C 1 14 HIS 14 50 50 HIS HIS C . n C 1 15 GLY 15 51 51 GLY GLY C . n C 1 16 VAL 16 52 52 VAL VAL C . n C 1 17 THR 17 53 53 THR THR C . n C 1 18 THR 18 54 54 THR THR C . n C 1 19 VAL 19 55 55 VAL VAL C . n C 1 20 ALA 20 56 56 ALA ALA C . n C 1 21 GLU 21 57 57 GLU GLU C . n C 1 22 LYS 22 58 58 LYS LYS C . n C 1 23 THR 23 59 59 THR THR C . n C 1 24 LYS 24 60 60 LYS LYS C . n C 1 25 GLU 25 61 61 GLU GLU C . n C 1 26 GLN 26 62 62 GLN GLN C . n C 1 27 VAL 27 63 63 VAL VAL C . n C 1 28 THR 28 64 64 THR THR C . n C 1 29 ASN 29 65 65 ASN ASN C . n C 1 30 VAL 30 66 66 VAL VAL C . n C 1 31 GLY 31 67 67 GLY GLY C . n C 1 32 GLY 32 68 68 GLY GLY C . n C 1 33 ALA 33 69 69 ALA ALA C . n C 1 34 VAL 34 70 70 VAL VAL C . n C 1 35 VAL 35 71 71 VAL VAL C . n C 1 36 THR 36 72 72 THR THR C . n C 1 37 GLY 37 73 73 GLY GLY C . n C 1 38 VAL 38 74 74 VAL VAL C . n C 1 39 THR 39 75 75 THR THR C . n C 1 40 ALA 40 76 76 ALA ALA C . n C 1 41 VAL 41 77 77 VAL VAL C . n C 1 42 ALA 42 78 78 ALA ALA C . n C 1 43 GLN 43 79 79 GLN GLN C . n C 1 44 LYS 44 80 80 LYS LYS C . n C 1 45 THR 45 81 81 THR THR C . n C 1 46 VAL 46 82 82 VAL VAL C . n C 1 47 GLU 47 83 83 GLU GLU C . n C 1 48 GLY 48 84 84 GLY GLY C . n C 1 49 ALA 49 85 85 ALA ALA C . n C 1 50 GLY 50 86 86 GLY GLY C . n C 1 51 SER 51 87 87 SER SER C . n C 1 52 ILE 52 88 88 ILE ILE C . n C 1 53 ALA 53 89 89 ALA ALA C . n C 1 54 ALA 54 90 90 ALA ALA C . n C 1 55 ALA 55 91 91 ALA ALA C . n C 1 56 THR 56 92 92 THR THR C . n C 1 57 GLY 57 93 93 GLY GLY C . n C 1 58 PHE 58 94 94 PHE PHE C . n C 1 59 VAL 59 95 95 VAL VAL C . n C 1 60 LYS 60 96 96 LYS LYS C . n C 1 61 LYS 61 97 97 LYS LYS C . n D 1 1 VAL 1 37 37 VAL VAL D . n D 1 2 LEU 2 38 38 LEU LEU D . n D 1 3 TYR 3 39 39 TYR TYR D . n D 1 4 VAL 4 40 40 VAL VAL D . n D 1 5 GLY 5 41 41 GLY GLY D . n D 1 6 SER 6 42 42 SER SER D . n D 1 7 LYS 7 43 43 LYS LYS D . n D 1 8 THR 8 44 44 THR THR D . n D 1 9 LYS 9 45 45 LYS LYS D . n D 1 10 GLU 10 46 46 GLU GLU D . n D 1 11 GLY 11 47 47 GLY GLY D . n D 1 12 VAL 12 48 48 VAL VAL D . n D 1 13 VAL 13 49 49 VAL VAL D . n D 1 14 HIS 14 50 50 HIS HIS D . n D 1 15 GLY 15 51 51 GLY GLY D . n D 1 16 VAL 16 52 52 VAL VAL D . n D 1 17 THR 17 53 53 THR THR D . n D 1 18 THR 18 54 54 THR THR D . n D 1 19 VAL 19 55 55 VAL VAL D . n D 1 20 ALA 20 56 56 ALA ALA D . n D 1 21 GLU 21 57 57 GLU GLU D . n D 1 22 LYS 22 58 58 LYS LYS D . n D 1 23 THR 23 59 59 THR THR D . n D 1 24 LYS 24 60 60 LYS LYS D . n D 1 25 GLU 25 61 61 GLU GLU D . n D 1 26 GLN 26 62 62 GLN GLN D . n D 1 27 VAL 27 63 63 VAL VAL D . n D 1 28 THR 28 64 64 THR THR D . n D 1 29 ASN 29 65 65 ASN ASN D . n D 1 30 VAL 30 66 66 VAL VAL D . n D 1 31 GLY 31 67 67 GLY GLY D . n D 1 32 GLY 32 68 68 GLY GLY D . n D 1 33 ALA 33 69 69 ALA ALA D . n D 1 34 VAL 34 70 70 VAL VAL D . n D 1 35 VAL 35 71 71 VAL VAL D . n D 1 36 THR 36 72 72 THR THR D . n D 1 37 GLY 37 73 73 GLY GLY D . n D 1 38 VAL 38 74 74 VAL VAL D . n D 1 39 THR 39 75 75 THR THR D . n D 1 40 ALA 40 76 76 ALA ALA D . n D 1 41 VAL 41 77 77 VAL VAL D . n D 1 42 ALA 42 78 78 ALA ALA D . n D 1 43 GLN 43 79 79 GLN GLN D . n D 1 44 LYS 44 80 80 LYS LYS D . n D 1 45 THR 45 81 81 THR THR D . n D 1 46 VAL 46 82 82 VAL VAL D . n D 1 47 GLU 47 83 83 GLU GLU D . n D 1 48 GLY 48 84 84 GLY GLY D . n D 1 49 ALA 49 85 85 ALA ALA D . n D 1 50 GLY 50 86 86 GLY GLY D . n D 1 51 SER 51 87 87 SER SER D . n D 1 52 ILE 52 88 88 ILE ILE D . n D 1 53 ALA 53 89 89 ALA ALA D . n D 1 54 ALA 54 90 90 ALA ALA D . n D 1 55 ALA 55 91 91 ALA ALA D . n D 1 56 THR 56 92 92 THR THR D . n D 1 57 GLY 57 93 93 GLY GLY D . n D 1 58 PHE 58 94 94 PHE PHE D . n D 1 59 VAL 59 95 95 VAL VAL D . n D 1 60 LYS 60 96 96 LYS LYS D . n D 1 61 LYS 61 97 97 LYS LYS D . n E 1 1 VAL 1 37 37 VAL VAL E . n E 1 2 LEU 2 38 38 LEU LEU E . n E 1 3 TYR 3 39 39 TYR TYR E . n E 1 4 VAL 4 40 40 VAL VAL E . n E 1 5 GLY 5 41 41 GLY GLY E . n E 1 6 SER 6 42 42 SER SER E . n E 1 7 LYS 7 43 43 LYS LYS E . n E 1 8 THR 8 44 44 THR THR E . n E 1 9 LYS 9 45 45 LYS LYS E . n E 1 10 GLU 10 46 46 GLU GLU E . n E 1 11 GLY 11 47 47 GLY GLY E . n E 1 12 VAL 12 48 48 VAL VAL E . n E 1 13 VAL 13 49 49 VAL VAL E . n E 1 14 HIS 14 50 50 HIS HIS E . n E 1 15 GLY 15 51 51 GLY GLY E . n E 1 16 VAL 16 52 52 VAL VAL E . n E 1 17 THR 17 53 53 THR THR E . n E 1 18 THR 18 54 54 THR THR E . n E 1 19 VAL 19 55 55 VAL VAL E . n E 1 20 ALA 20 56 56 ALA ALA E . n E 1 21 GLU 21 57 57 GLU GLU E . n E 1 22 LYS 22 58 58 LYS LYS E . n E 1 23 THR 23 59 59 THR THR E . n E 1 24 LYS 24 60 60 LYS LYS E . n E 1 25 GLU 25 61 61 GLU GLU E . n E 1 26 GLN 26 62 62 GLN GLN E . n E 1 27 VAL 27 63 63 VAL VAL E . n E 1 28 THR 28 64 64 THR THR E . n E 1 29 ASN 29 65 65 ASN ASN E . n E 1 30 VAL 30 66 66 VAL VAL E . n E 1 31 GLY 31 67 67 GLY GLY E . n E 1 32 GLY 32 68 68 GLY GLY E . n E 1 33 ALA 33 69 69 ALA ALA E . n E 1 34 VAL 34 70 70 VAL VAL E . n E 1 35 VAL 35 71 71 VAL VAL E . n E 1 36 THR 36 72 72 THR THR E . n E 1 37 GLY 37 73 73 GLY GLY E . n E 1 38 VAL 38 74 74 VAL VAL E . n E 1 39 THR 39 75 75 THR THR E . n E 1 40 ALA 40 76 76 ALA ALA E . n E 1 41 VAL 41 77 77 VAL VAL E . n E 1 42 ALA 42 78 78 ALA ALA E . n E 1 43 GLN 43 79 79 GLN GLN E . n E 1 44 LYS 44 80 80 LYS LYS E . n E 1 45 THR 45 81 81 THR THR E . n E 1 46 VAL 46 82 82 VAL VAL E . n E 1 47 GLU 47 83 83 GLU GLU E . n E 1 48 GLY 48 84 84 GLY GLY E . n E 1 49 ALA 49 85 85 ALA ALA E . n E 1 50 GLY 50 86 86 GLY GLY E . n E 1 51 SER 51 87 87 SER SER E . n E 1 52 ILE 52 88 88 ILE ILE E . n E 1 53 ALA 53 89 89 ALA ALA E . n E 1 54 ALA 54 90 90 ALA ALA E . n E 1 55 ALA 55 91 91 ALA ALA E . n E 1 56 THR 56 92 92 THR THR E . n E 1 57 GLY 57 93 93 GLY GLY E . n E 1 58 PHE 58 94 94 PHE PHE E . n E 1 59 VAL 59 95 95 VAL VAL E . n E 1 60 LYS 60 96 96 LYS LYS E . n E 1 61 LYS 61 97 97 LYS LYS E . n F 1 1 VAL 1 37 37 VAL VAL F . n F 1 2 LEU 2 38 38 LEU LEU F . n F 1 3 TYR 3 39 39 TYR TYR F . n F 1 4 VAL 4 40 40 VAL VAL F . n F 1 5 GLY 5 41 41 GLY GLY F . n F 1 6 SER 6 42 42 SER SER F . n F 1 7 LYS 7 43 43 LYS LYS F . n F 1 8 THR 8 44 44 THR THR F . n F 1 9 LYS 9 45 45 LYS LYS F . n F 1 10 GLU 10 46 46 GLU GLU F . n F 1 11 GLY 11 47 47 GLY GLY F . n F 1 12 VAL 12 48 48 VAL VAL F . n F 1 13 VAL 13 49 49 VAL VAL F . n F 1 14 HIS 14 50 50 HIS HIS F . n F 1 15 GLY 15 51 51 GLY GLY F . n F 1 16 VAL 16 52 52 VAL VAL F . n F 1 17 THR 17 53 53 THR THR F . n F 1 18 THR 18 54 54 THR THR F . n F 1 19 VAL 19 55 55 VAL VAL F . n F 1 20 ALA 20 56 56 ALA ALA F . n F 1 21 GLU 21 57 57 GLU GLU F . n F 1 22 LYS 22 58 58 LYS LYS F . n F 1 23 THR 23 59 59 THR THR F . n F 1 24 LYS 24 60 60 LYS LYS F . n F 1 25 GLU 25 61 61 GLU GLU F . n F 1 26 GLN 26 62 62 GLN GLN F . n F 1 27 VAL 27 63 63 VAL VAL F . n F 1 28 THR 28 64 64 THR THR F . n F 1 29 ASN 29 65 65 ASN ASN F . n F 1 30 VAL 30 66 66 VAL VAL F . n F 1 31 GLY 31 67 67 GLY GLY F . n F 1 32 GLY 32 68 68 GLY GLY F . n F 1 33 ALA 33 69 69 ALA ALA F . n F 1 34 VAL 34 70 70 VAL VAL F . n F 1 35 VAL 35 71 71 VAL VAL F . n F 1 36 THR 36 72 72 THR THR F . n F 1 37 GLY 37 73 73 GLY GLY F . n F 1 38 VAL 38 74 74 VAL VAL F . n F 1 39 THR 39 75 75 THR THR F . n F 1 40 ALA 40 76 76 ALA ALA F . n F 1 41 VAL 41 77 77 VAL VAL F . n F 1 42 ALA 42 78 78 ALA ALA F . n F 1 43 GLN 43 79 79 GLN GLN F . n F 1 44 LYS 44 80 80 LYS LYS F . n F 1 45 THR 45 81 81 THR THR F . n F 1 46 VAL 46 82 82 VAL VAL F . n F 1 47 GLU 47 83 83 GLU GLU F . n F 1 48 GLY 48 84 84 GLY GLY F . n F 1 49 ALA 49 85 85 ALA ALA F . n F 1 50 GLY 50 86 86 GLY GLY F . n F 1 51 SER 51 87 87 SER SER F . n F 1 52 ILE 52 88 88 ILE ILE F . n F 1 53 ALA 53 89 89 ALA ALA F . n F 1 54 ALA 54 90 90 ALA ALA F . n F 1 55 ALA 55 91 91 ALA ALA F . n F 1 56 THR 56 92 92 THR THR F . n F 1 57 GLY 57 93 93 GLY GLY F . n F 1 58 PHE 58 94 94 PHE PHE F . n F 1 59 VAL 59 95 95 VAL VAL F . n F 1 60 LYS 60 96 96 LYS LYS F . n F 1 61 LYS 61 97 97 LYS LYS F . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9RZF _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9RZF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9RZF _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9RZF _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.80 _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'REAL-SPACE (WEIGHTED MAP SUM AT ATOM CENTERS)' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.004 ? 4350 ? f_bond_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.766 ? 5890 ? f_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 5.866 ? 630 ? f_dihedral_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.054 ? 790 ? f_chiral_restr ? ? ? 'ELECTRON MICROSCOPY' ? 0.004 ? 720 ? f_plane_restr ? ? ? # _struct.entry_id 9RZF _struct.title 'Structure of in-vivo formed alpha-synuclein fibrils purified from a M83+/- mouse brain injected with recombinant 1B fibrils' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9RZF _struct_keywords.text 'Alpha-synuclein, Prion-like, Fibril, Paired helical filament, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SYUA_HUMAN _struct_ref.pdbx_db_accession P37840 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code VLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKK _struct_ref.pdbx_align_begin 37 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9RZF A 1 ? 61 ? P37840 37 ? 97 ? 37 97 2 1 9RZF B 1 ? 61 ? P37840 37 ? 97 ? 37 97 3 1 9RZF C 1 ? 61 ? P37840 37 ? 97 ? 37 97 4 1 9RZF D 1 ? 61 ? P37840 37 ? 97 ? 37 97 5 1 9RZF E 1 ? 61 ? P37840 37 ? 97 ? 37 97 6 1 9RZF F 1 ? 61 ? P37840 37 ? 97 ? 37 97 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9RZF THR A 17 ? UNP P37840 ALA 53 'engineered mutation' 53 1 2 9RZF THR B 17 ? UNP P37840 ALA 53 'engineered mutation' 53 2 3 9RZF THR C 17 ? UNP P37840 ALA 53 'engineered mutation' 53 3 4 9RZF THR D 17 ? UNP P37840 ALA 53 'engineered mutation' 53 4 5 9RZF THR E 17 ? UNP P37840 ALA 53 'engineered mutation' 53 5 6 9RZF THR F 17 ? UNP P37840 ALA 53 'engineered mutation' 53 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 2 ? AA3 ? 3 ? AA4 ? 3 ? AA5 ? 3 ? AA6 ? 3 ? AA7 ? 3 ? AA8 ? 2 ? AA9 ? 3 ? AB1 ? 3 ? AB2 ? 3 ? AB3 ? 3 ? AB4 ? 3 ? AB5 ? 3 ? AB6 ? 2 ? AB7 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA2 1 2 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA8 1 2 ? parallel AA9 1 2 ? parallel AA9 2 3 ? parallel AB1 1 2 ? parallel AB1 2 3 ? parallel AB2 1 2 ? parallel AB2 2 3 ? parallel AB3 1 2 ? parallel AB3 2 3 ? parallel AB4 1 2 ? parallel AB4 2 3 ? parallel AB5 1 2 ? parallel AB5 2 3 ? parallel AB6 1 2 ? parallel AB7 1 2 ? parallel AB7 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU C 2 ? VAL C 4 ? LEU C 38 VAL C 40 AA1 2 LEU A 2 ? VAL A 4 ? LEU A 38 VAL A 40 AA1 3 LEU E 2 ? VAL E 4 ? LEU E 38 VAL E 40 AA2 1 LYS A 9 ? GLU A 10 ? LYS A 45 GLU A 46 AA2 2 LYS C 9 ? GLU C 10 ? LYS C 45 GLU C 46 AA3 1 VAL C 13 ? VAL C 19 ? VAL C 49 VAL C 55 AA3 2 VAL A 13 ? VAL A 19 ? VAL A 49 VAL A 55 AA3 3 VAL E 13 ? VAL E 19 ? VAL E 49 VAL E 55 AA4 1 LYS C 22 ? GLU C 25 ? LYS C 58 GLU C 61 AA4 2 LYS A 22 ? GLU A 25 ? LYS A 58 GLU A 61 AA4 3 LYS E 22 ? GLU E 25 ? LYS E 58 GLU E 61 AA5 1 ALA C 33 ? ALA C 42 ? ALA C 69 ALA C 78 AA5 2 ALA A 33 ? ALA A 42 ? ALA A 69 ALA A 78 AA5 3 ALA E 33 ? ALA E 42 ? ALA E 69 ALA E 78 AA6 1 THR C 45 ? GLU C 47 ? THR C 81 GLU C 83 AA6 2 THR A 45 ? GLU A 47 ? THR A 81 GLU A 83 AA6 3 THR E 45 ? VAL E 46 ? THR E 81 VAL E 82 AA7 1 ILE C 52 ? LYS C 60 ? ILE C 88 LYS C 96 AA7 2 ILE A 52 ? LYS A 60 ? ILE A 88 LYS A 96 AA7 3 ILE E 52 ? LYS E 60 ? ILE E 88 LYS E 96 AA8 1 LEU B 2 ? TYR B 3 ? LEU B 38 TYR B 39 AA8 2 LEU D 2 ? TYR D 3 ? LEU D 38 TYR D 39 AA9 1 THR D 8 ? GLU D 10 ? THR D 44 GLU D 46 AA9 2 LYS B 7 ? GLU B 10 ? LYS B 43 GLU B 46 AA9 3 LYS F 7 ? GLU F 10 ? LYS F 43 GLU F 46 AB1 1 VAL D 13 ? HIS D 14 ? VAL D 49 HIS D 50 AB1 2 VAL B 13 ? HIS B 14 ? VAL B 49 HIS B 50 AB1 3 VAL F 13 ? HIS F 14 ? VAL F 49 HIS F 50 AB2 1 THR D 18 ? VAL D 19 ? THR D 54 VAL D 55 AB2 2 THR B 18 ? VAL B 19 ? THR B 54 VAL B 55 AB2 3 THR F 18 ? VAL F 19 ? THR F 54 VAL F 55 AB3 1 THR D 23 ? GLU D 25 ? THR D 59 GLU D 61 AB3 2 LYS B 22 ? GLU B 25 ? LYS B 58 GLU B 61 AB3 3 LYS F 22 ? GLU F 25 ? LYS F 58 GLU F 61 AB4 1 ALA D 33 ? VAL D 35 ? ALA D 69 VAL D 71 AB4 2 ALA B 33 ? VAL B 35 ? ALA B 69 VAL B 71 AB4 3 ALA F 33 ? VAL F 35 ? ALA F 69 VAL F 71 AB5 1 VAL D 38 ? ALA D 42 ? VAL D 74 ALA D 78 AB5 2 VAL B 38 ? ALA B 42 ? VAL B 74 ALA B 78 AB5 3 VAL F 38 ? ALA F 42 ? VAL F 74 ALA F 78 AB6 1 THR B 45 ? VAL B 46 ? THR B 81 VAL B 82 AB6 2 THR F 45 ? VAL F 46 ? THR F 81 VAL F 82 AB7 1 ILE D 52 ? LYS D 60 ? ILE D 88 LYS D 96 AB7 2 ILE B 52 ? LYS B 60 ? ILE B 88 LYS B 96 AB7 3 ILE F 52 ? LYS F 60 ? ILE F 88 LYS F 96 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O TYR C 3 ? O TYR C 39 N VAL A 4 ? N VAL A 40 AA1 2 3 N TYR A 3 ? N TYR A 39 O VAL E 4 ? O VAL E 40 AA2 1 2 N LYS A 9 ? N LYS A 45 O GLU C 10 ? O GLU C 46 AA3 1 2 O THR C 18 ? O THR C 54 N VAL A 19 ? N VAL A 55 AA3 2 3 N THR A 18 ? N THR A 54 O VAL E 19 ? O VAL E 55 AA4 1 2 O THR C 23 ? O THR C 59 N LYS A 24 ? N LYS A 60 AA4 2 3 N GLU A 25 ? N GLU A 61 O LYS E 24 ? O LYS E 60 AA5 1 2 O ALA C 40 ? O ALA C 76 N VAL A 41 ? N VAL A 77 AA5 2 3 N ALA A 40 ? N ALA A 76 O VAL E 41 ? O VAL E 77 AA6 1 2 O GLU C 47 ? O GLU C 83 N VAL A 46 ? N VAL A 82 AA6 2 3 N GLU A 47 ? N GLU A 83 O VAL E 46 ? O VAL E 82 AA7 1 2 O ILE C 52 ? O ILE C 88 N ALA A 53 ? N ALA A 89 AA7 2 3 N ILE A 52 ? N ILE A 88 O ALA E 53 ? O ALA E 89 AA8 1 2 N LEU B 2 ? N LEU B 38 O TYR D 3 ? O TYR D 39 AA9 1 2 O GLU D 10 ? O GLU D 46 N LYS B 9 ? N LYS B 45 AA9 2 3 N GLU B 10 ? N GLU B 46 O LYS F 9 ? O LYS F 45 AB1 1 2 O VAL D 13 ? O VAL D 49 N HIS B 14 ? N HIS B 50 AB1 2 3 N VAL B 13 ? N VAL B 49 O HIS F 14 ? O HIS F 50 AB2 1 2 O THR D 18 ? O THR D 54 N VAL B 19 ? N VAL B 55 AB2 2 3 N THR B 18 ? N THR B 54 O VAL F 19 ? O VAL F 55 AB3 1 2 O GLU D 25 ? O GLU D 61 N LYS B 24 ? N LYS B 60 AB3 2 3 N GLU B 25 ? N GLU B 61 O LYS F 24 ? O LYS F 60 AB4 1 2 O VAL D 34 ? O VAL D 70 N ALA B 33 ? N ALA B 69 AB4 2 3 N VAL B 34 ? N VAL B 70 O VAL F 35 ? O VAL F 71 AB5 1 2 O ALA D 40 ? O ALA D 76 N VAL B 41 ? N VAL B 77 AB5 2 3 N ALA B 40 ? N ALA B 76 O VAL F 41 ? O VAL F 77 AB6 1 2 N THR B 45 ? N THR B 81 O VAL F 46 ? O VAL F 82 AB7 1 2 O ALA D 55 ? O ALA D 91 N ALA B 54 ? N ALA B 90 AB7 2 3 N ALA B 55 ? N ALA B 91 O ALA F 54 ? O ALA F 90 # _pdbx_entry_details.entry_id 9RZF _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 43 ? ? -119.24 51.25 2 1 GLU E 46 ? ? -84.73 -156.29 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9RZF _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details 'A rigid-body fit was done using ChimeraX and a subsequent jiggle fit and all-atom refinement was done in Coot.' _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' # loop_ _em_3d_fitting_list.id _em_3d_fitting_list.3d_fitting_id _em_3d_fitting_list.pdb_entry_id _em_3d_fitting_list.pdb_chain_id _em_3d_fitting_list.pdb_chain_residue_range _em_3d_fitting_list.details _em_3d_fitting_list.chain_id _em_3d_fitting_list.chain_residue_range _em_3d_fitting_list.source_name _em_3d_fitting_list.type _em_3d_fitting_list.accession_code _em_3d_fitting_list.initial_refinement_model_id 1 1 9EUU A ? ? A ? PDB 'experimental model' 9EUU 1 2 1 9EUU B ? ? B ? PDB 'experimental model' 9EUU 1 # _em_3d_reconstruction.entry_id 9RZF _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.8 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 1913 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details '50 mM Tris-HCl, 150 mM NaCl, pH7.4' _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Alpha-synuclein fibril purified from the brain of a 1B-injected M83+/- mouse' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_image_scans.entry_id 9RZF _em_image_scans.id 1 _em_image_scans.number_digital_images ? _em_image_scans.details ? _em_image_scans.scanner_model ? _em_image_scans.sampling_size ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.citation_id ? _em_image_scans.dimension_height 4096 _em_image_scans.dimension_width 4096 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.used_frames_per_image ? # _em_imaging.entry_id 9RZF _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 2200 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 165000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter 50.0 _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type Quantifoil _em_sample_support.details 'The grids were not glow-discharged' _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 9RZF _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 80 _em_vitrification.temp ? _em_vitrification.chamber_temperature 293 _em_vitrification.instrument 'LEICA EM GP' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9RZF _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 GLN N N N N 31 GLN CA C N S 32 GLN C C N N 33 GLN O O N N 34 GLN CB C N N 35 GLN CG C N N 36 GLN CD C N N 37 GLN OE1 O N N 38 GLN NE2 N N N 39 GLN OXT O N N 40 GLN H H N N 41 GLN H2 H N N 42 GLN HA H N N 43 GLN HB2 H N N 44 GLN HB3 H N N 45 GLN HG2 H N N 46 GLN HG3 H N N 47 GLN HE21 H N N 48 GLN HE22 H N N 49 GLN HXT H N N 50 GLU N N N N 51 GLU CA C N S 52 GLU C C N N 53 GLU O O N N 54 GLU CB C N N 55 GLU CG C N N 56 GLU CD C N N 57 GLU OE1 O N N 58 GLU OE2 O N N 59 GLU OXT O N N 60 GLU H H N N 61 GLU H2 H N N 62 GLU HA H N N 63 GLU HB2 H N N 64 GLU HB3 H N N 65 GLU HG2 H N N 66 GLU HG3 H N N 67 GLU HE2 H N N 68 GLU HXT H N N 69 GLY N N N N 70 GLY CA C N N 71 GLY C C N N 72 GLY O O N N 73 GLY OXT O N N 74 GLY H H N N 75 GLY H2 H N N 76 GLY HA2 H N N 77 GLY HA3 H N N 78 GLY HXT H N N 79 HIS N N N N 80 HIS CA C N S 81 HIS C C N N 82 HIS O O N N 83 HIS CB C N N 84 HIS CG C Y N 85 HIS ND1 N Y N 86 HIS CD2 C Y N 87 HIS CE1 C Y N 88 HIS NE2 N Y N 89 HIS OXT O N N 90 HIS H H N N 91 HIS H2 H N N 92 HIS HA H N N 93 HIS HB2 H N N 94 HIS HB3 H N N 95 HIS HD1 H N N 96 HIS HD2 H N N 97 HIS HE1 H N N 98 HIS HE2 H N N 99 HIS HXT H N N 100 ILE N N N N 101 ILE CA C N S 102 ILE C C N N 103 ILE O O N N 104 ILE CB C N S 105 ILE CG1 C N N 106 ILE CG2 C N N 107 ILE CD1 C N N 108 ILE OXT O N N 109 ILE H H N N 110 ILE H2 H N N 111 ILE HA H N N 112 ILE HB H N N 113 ILE HG12 H N N 114 ILE HG13 H N N 115 ILE HG21 H N N 116 ILE HG22 H N N 117 ILE HG23 H N N 118 ILE HD11 H N N 119 ILE HD12 H N N 120 ILE HD13 H N N 121 ILE HXT H N N 122 LEU N N N N 123 LEU CA C N S 124 LEU C C N N 125 LEU O O N N 126 LEU CB C N N 127 LEU CG C N N 128 LEU CD1 C N N 129 LEU CD2 C N N 130 LEU OXT O N N 131 LEU H H N N 132 LEU H2 H N N 133 LEU HA H N N 134 LEU HB2 H N N 135 LEU HB3 H N N 136 LEU HG H N N 137 LEU HD11 H N N 138 LEU HD12 H N N 139 LEU HD13 H N N 140 LEU HD21 H N N 141 LEU HD22 H N N 142 LEU HD23 H N N 143 LEU HXT H N N 144 LYS N N N N 145 LYS CA C N S 146 LYS C C N N 147 LYS O O N N 148 LYS CB C N N 149 LYS CG C N N 150 LYS CD C N N 151 LYS CE C N N 152 LYS NZ N N N 153 LYS OXT O N N 154 LYS H H N N 155 LYS H2 H N N 156 LYS HA H N N 157 LYS HB2 H N N 158 LYS HB3 H N N 159 LYS HG2 H N N 160 LYS HG3 H N N 161 LYS HD2 H N N 162 LYS HD3 H N N 163 LYS HE2 H N N 164 LYS HE3 H N N 165 LYS HZ1 H N N 166 LYS HZ2 H N N 167 LYS HZ3 H N N 168 LYS HXT H N N 169 PHE N N N N 170 PHE CA C N S 171 PHE C C N N 172 PHE O O N N 173 PHE CB C N N 174 PHE CG C Y N 175 PHE CD1 C Y N 176 PHE CD2 C Y N 177 PHE CE1 C Y N 178 PHE CE2 C Y N 179 PHE CZ C Y N 180 PHE OXT O N N 181 PHE H H N N 182 PHE H2 H N N 183 PHE HA H N N 184 PHE HB2 H N N 185 PHE HB3 H N N 186 PHE HD1 H N N 187 PHE HD2 H N N 188 PHE HE1 H N N 189 PHE HE2 H N N 190 PHE HZ H N N 191 PHE HXT H N N 192 SER N N N N 193 SER CA C N S 194 SER C C N N 195 SER O O N N 196 SER CB C N N 197 SER OG O N N 198 SER OXT O N N 199 SER H H N N 200 SER H2 H N N 201 SER HA H N N 202 SER HB2 H N N 203 SER HB3 H N N 204 SER HG H N N 205 SER HXT H N N 206 THR N N N N 207 THR CA C N S 208 THR C C N N 209 THR O O N N 210 THR CB C N R 211 THR OG1 O N N 212 THR CG2 C N N 213 THR OXT O N N 214 THR H H N N 215 THR H2 H N N 216 THR HA H N N 217 THR HB H N N 218 THR HG1 H N N 219 THR HG21 H N N 220 THR HG22 H N N 221 THR HG23 H N N 222 THR HXT H N N 223 TYR N N N N 224 TYR CA C N S 225 TYR C C N N 226 TYR O O N N 227 TYR CB C N N 228 TYR CG C Y N 229 TYR CD1 C Y N 230 TYR CD2 C Y N 231 TYR CE1 C Y N 232 TYR CE2 C Y N 233 TYR CZ C Y N 234 TYR OH O N N 235 TYR OXT O N N 236 TYR H H N N 237 TYR H2 H N N 238 TYR HA H N N 239 TYR HB2 H N N 240 TYR HB3 H N N 241 TYR HD1 H N N 242 TYR HD2 H N N 243 TYR HE1 H N N 244 TYR HE2 H N N 245 TYR HH H N N 246 TYR HXT H N N 247 VAL N N N N 248 VAL CA C N S 249 VAL C C N N 250 VAL O O N N 251 VAL CB C N N 252 VAL CG1 C N N 253 VAL CG2 C N N 254 VAL OXT O N N 255 VAL H H N N 256 VAL H2 H N N 257 VAL HA H N N 258 VAL HB H N N 259 VAL HG11 H N N 260 VAL HG12 H N N 261 VAL HG13 H N N 262 VAL HG21 H N N 263 VAL HG22 H N N 264 VAL HG23 H N N 265 VAL HXT H N N 266 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 GLN N CA sing N N 29 GLN N H sing N N 30 GLN N H2 sing N N 31 GLN CA C sing N N 32 GLN CA CB sing N N 33 GLN CA HA sing N N 34 GLN C O doub N N 35 GLN C OXT sing N N 36 GLN CB CG sing N N 37 GLN CB HB2 sing N N 38 GLN CB HB3 sing N N 39 GLN CG CD sing N N 40 GLN CG HG2 sing N N 41 GLN CG HG3 sing N N 42 GLN CD OE1 doub N N 43 GLN CD NE2 sing N N 44 GLN NE2 HE21 sing N N 45 GLN NE2 HE22 sing N N 46 GLN OXT HXT sing N N 47 GLU N CA sing N N 48 GLU N H sing N N 49 GLU N H2 sing N N 50 GLU CA C sing N N 51 GLU CA CB sing N N 52 GLU CA HA sing N N 53 GLU C O doub N N 54 GLU C OXT sing N N 55 GLU CB CG sing N N 56 GLU CB HB2 sing N N 57 GLU CB HB3 sing N N 58 GLU CG CD sing N N 59 GLU CG HG2 sing N N 60 GLU CG HG3 sing N N 61 GLU CD OE1 doub N N 62 GLU CD OE2 sing N N 63 GLU OE2 HE2 sing N N 64 GLU OXT HXT sing N N 65 GLY N CA sing N N 66 GLY N H sing N N 67 GLY N H2 sing N N 68 GLY CA C sing N N 69 GLY CA HA2 sing N N 70 GLY CA HA3 sing N N 71 GLY C O doub N N 72 GLY C OXT sing N N 73 GLY OXT HXT sing N N 74 HIS N CA sing N N 75 HIS N H sing N N 76 HIS N H2 sing N N 77 HIS CA C sing N N 78 HIS CA CB sing N N 79 HIS CA HA sing N N 80 HIS C O doub N N 81 HIS C OXT sing N N 82 HIS CB CG sing N N 83 HIS CB HB2 sing N N 84 HIS CB HB3 sing N N 85 HIS CG ND1 sing Y N 86 HIS CG CD2 doub Y N 87 HIS ND1 CE1 doub Y N 88 HIS ND1 HD1 sing N N 89 HIS CD2 NE2 sing Y N 90 HIS CD2 HD2 sing N N 91 HIS CE1 NE2 sing Y N 92 HIS CE1 HE1 sing N N 93 HIS NE2 HE2 sing N N 94 HIS OXT HXT sing N N 95 ILE N CA sing N N 96 ILE N H sing N N 97 ILE N H2 sing N N 98 ILE CA C sing N N 99 ILE CA CB sing N N 100 ILE CA HA sing N N 101 ILE C O doub N N 102 ILE C OXT sing N N 103 ILE CB CG1 sing N N 104 ILE CB CG2 sing N N 105 ILE CB HB sing N N 106 ILE CG1 CD1 sing N N 107 ILE CG1 HG12 sing N N 108 ILE CG1 HG13 sing N N 109 ILE CG2 HG21 sing N N 110 ILE CG2 HG22 sing N N 111 ILE CG2 HG23 sing N N 112 ILE CD1 HD11 sing N N 113 ILE CD1 HD12 sing N N 114 ILE CD1 HD13 sing N N 115 ILE OXT HXT sing N N 116 LEU N CA sing N N 117 LEU N H sing N N 118 LEU N H2 sing N N 119 LEU CA C sing N N 120 LEU CA CB sing N N 121 LEU CA HA sing N N 122 LEU C O doub N N 123 LEU C OXT sing N N 124 LEU CB CG sing N N 125 LEU CB HB2 sing N N 126 LEU CB HB3 sing N N 127 LEU CG CD1 sing N N 128 LEU CG CD2 sing N N 129 LEU CG HG sing N N 130 LEU CD1 HD11 sing N N 131 LEU CD1 HD12 sing N N 132 LEU CD1 HD13 sing N N 133 LEU CD2 HD21 sing N N 134 LEU CD2 HD22 sing N N 135 LEU CD2 HD23 sing N N 136 LEU OXT HXT sing N N 137 LYS N CA sing N N 138 LYS N H sing N N 139 LYS N H2 sing N N 140 LYS CA C sing N N 141 LYS CA CB sing N N 142 LYS CA HA sing N N 143 LYS C O doub N N 144 LYS C OXT sing N N 145 LYS CB CG sing N N 146 LYS CB HB2 sing N N 147 LYS CB HB3 sing N N 148 LYS CG CD sing N N 149 LYS CG HG2 sing N N 150 LYS CG HG3 sing N N 151 LYS CD CE sing N N 152 LYS CD HD2 sing N N 153 LYS CD HD3 sing N N 154 LYS CE NZ sing N N 155 LYS CE HE2 sing N N 156 LYS CE HE3 sing N N 157 LYS NZ HZ1 sing N N 158 LYS NZ HZ2 sing N N 159 LYS NZ HZ3 sing N N 160 LYS OXT HXT sing N N 161 PHE N CA sing N N 162 PHE N H sing N N 163 PHE N H2 sing N N 164 PHE CA C sing N N 165 PHE CA CB sing N N 166 PHE CA HA sing N N 167 PHE C O doub N N 168 PHE C OXT sing N N 169 PHE CB CG sing N N 170 PHE CB HB2 sing N N 171 PHE CB HB3 sing N N 172 PHE CG CD1 doub Y N 173 PHE CG CD2 sing Y N 174 PHE CD1 CE1 sing Y N 175 PHE CD1 HD1 sing N N 176 PHE CD2 CE2 doub Y N 177 PHE CD2 HD2 sing N N 178 PHE CE1 CZ doub Y N 179 PHE CE1 HE1 sing N N 180 PHE CE2 CZ sing Y N 181 PHE CE2 HE2 sing N N 182 PHE CZ HZ sing N N 183 PHE OXT HXT sing N N 184 SER N CA sing N N 185 SER N H sing N N 186 SER N H2 sing N N 187 SER CA C sing N N 188 SER CA CB sing N N 189 SER CA HA sing N N 190 SER C O doub N N 191 SER C OXT sing N N 192 SER CB OG sing N N 193 SER CB HB2 sing N N 194 SER CB HB3 sing N N 195 SER OG HG sing N N 196 SER OXT HXT sing N N 197 THR N CA sing N N 198 THR N H sing N N 199 THR N H2 sing N N 200 THR CA C sing N N 201 THR CA CB sing N N 202 THR CA HA sing N N 203 THR C O doub N N 204 THR C OXT sing N N 205 THR CB OG1 sing N N 206 THR CB CG2 sing N N 207 THR CB HB sing N N 208 THR OG1 HG1 sing N N 209 THR CG2 HG21 sing N N 210 THR CG2 HG22 sing N N 211 THR CG2 HG23 sing N N 212 THR OXT HXT sing N N 213 TYR N CA sing N N 214 TYR N H sing N N 215 TYR N H2 sing N N 216 TYR CA C sing N N 217 TYR CA CB sing N N 218 TYR CA HA sing N N 219 TYR C O doub N N 220 TYR C OXT sing N N 221 TYR CB CG sing N N 222 TYR CB HB2 sing N N 223 TYR CB HB3 sing N N 224 TYR CG CD1 doub Y N 225 TYR CG CD2 sing Y N 226 TYR CD1 CE1 sing Y N 227 TYR CD1 HD1 sing N N 228 TYR CD2 CE2 doub Y N 229 TYR CD2 HD2 sing N N 230 TYR CE1 CZ doub Y N 231 TYR CE1 HE1 sing N N 232 TYR CE2 CZ sing Y N 233 TYR CE2 HE2 sing N N 234 TYR CZ OH sing N N 235 TYR OH HH sing N N 236 TYR OXT HXT sing N N 237 VAL N CA sing N N 238 VAL N H sing N N 239 VAL N H2 sing N N 240 VAL CA C sing N N 241 VAL CA CB sing N N 242 VAL CA HA sing N N 243 VAL C O doub N N 244 VAL C OXT sing N N 245 VAL CB CG1 sing N N 246 VAL CB CG2 sing N N 247 VAL CB HB sing N N 248 VAL CG1 HG11 sing N N 249 VAL CG1 HG12 sing N N 250 VAL CG1 HG13 sing N N 251 VAL CG2 HG21 sing N N 252 VAL CG2 HG22 sing N N 253 VAL CG2 HG23 sing N N 254 VAL OXT HXT sing N N 255 # _em_admin.current_status REL _em_admin.deposition_date 2025-07-15 _em_admin.deposition_site PDBE _em_admin.entry_id 9RZF _em_admin.last_update 2025-12-24 _em_admin.map_release_date 2025-07-30 _em_admin.title 'Structure of in-vivo formed alpha-synuclein fibrils purified from a M83+/- mouse brain injected with recombinant 1B fibrils' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 150 mM NaCl 1 'sodium chloride' 1 50 mM Tris-HCl 2 Tris-HCl # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units KILODALTONS/NANOMETER _em_entity_assembly_molwt.value 14 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain 'Hemizygous A53T alpha-synuclein transgenic line M83' _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 1 _em_entity_assembly_recombinant.ncbi_tax_id 10090 _em_entity_assembly_recombinant.organism 'Mus musculus' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain 'Hemizygous A53T alpha-synuclein transgenic line M83' # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit 179.55 _em_helical_entity.axial_rise_per_subunit 2.40 # _em_image_processing.details 'A total of 40 movies was selected for manual picking' _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 3.04 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details 'Images were collected in movie-mode with a total of 936 frames per movie.' _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON IV (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 2 _em_image_recording.num_real_images 42812 # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width ? _em_imaging_optics.energyfilter_name 'TFS Selectris X' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # _em_particle_selection.details 'Particles selected by manual picking of fibril start and end points' _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 3556 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' 'Used for manual picking and helical reconstruction' 1 1 ? ? RELION 4.0.0 ? 'PARTICLE SELECTION' 'Used for selection of micrographs' 2 1 ? ? cryoSPARC 4.7.0 ? 'IMAGE ACQUISITION' ? 3 ? ? 1 EPU ? ? MASKING ? 4 ? ? ? ? ? ? 'CTF CORRECTION' ? 5 1 ? ? CTFFIND 4.1 ? 'LAYERLINE INDEXING' ? 6 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 7 ? ? ? ? ? ? 'MODEL FITTING' ? 8 ? 1 ? Coot 0.9.8.96 ? 'MODEL FITTING' ? 9 ? 1 ? 'UCSF ChimeraX' 1.6 ? OTHER ? 10 ? ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 12 1 ? ? ? ? ? CLASSIFICATION ? 13 1 ? ? ? ? ? RECONSTRUCTION ? 14 1 ? ? RELION 4.0.0 ? 'MODEL REFINEMENT' ? 15 ? 1 ? PHENIX 1.21.2 ? 'VOLUME SELECTION' ? 16 1 1 1 ? ? ? 'SERIES ALIGNMENT' ? 17 1 1 1 ? ? ? 'MOLECULAR REPLACEMENT' ? 18 1 1 1 ? ? ? 'LATTICE DISTORTION CORRECTION' ? 19 1 1 1 ? ? ? 'SYMMETRY DETERMINATION' ? 20 1 1 1 ? ? ? 'CRYSTALLOGRAPHY MERGING' ? 21 1 1 1 ? ? ? # _em_specimen.concentration ? _em_specimen.details 'Sarkosyl-insoluble fraction' _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Swiss National Science Foundation' Switzerland IC00I0L-231578 1 'Agence Nationale de la Recherche (ANR)' France ANR-24-CE93-0003 2 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 9EUU _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 9RZF _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_ #