HEADER PLANT PROTEIN 15-JUL-25 9RZH TITLE CRYSTAL STRUCTURE OF AMBORELLA TRICHOPODA ACCO2 IN COMPLEX WITH FE AND TITLE 2 ACC COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOCYCLOPROPANECARBOXYLATE OXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.17.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMBORELLA TRICHOPODA; SOURCE 3 ORGANISM_TAXID: 13333; SOURCE 4 GENE: AMTR_S00112P00098670; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_ATCC_NUMBER: BAA-1025 KEYWDS AMINOCYCLOPROPANECARBOXYLATE ETHYLENE OXIDASE PLANT HORMONE, PLANT KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.ZHANG,C.J.SCHOFIELD REVDAT 1 29-JUL-26 9RZH 0 JRNL AUTH Z.ZHANG,C.J.SCHOFIELD JRNL TITL STRUCTURES AND MECHANISMS OF AMBORELLA ACC OXIDASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 57976 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.320 REMARK 3 FREE R VALUE TEST SET COUNT : 1922 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.9100 - 3.3300 0.97 4348 145 0.1542 0.1641 REMARK 3 2 3.3300 - 2.6400 1.00 4282 150 0.1716 0.2269 REMARK 3 3 2.6400 - 2.3100 1.00 4249 127 0.1695 0.1942 REMARK 3 4 2.3100 - 2.1000 0.99 4180 164 0.1720 0.2074 REMARK 3 5 2.1000 - 1.9500 0.99 4178 125 0.1768 0.2034 REMARK 3 6 1.9500 - 1.8300 0.96 4008 146 0.1990 0.2363 REMARK 3 7 1.8300 - 1.7400 0.99 4143 126 0.2493 0.3238 REMARK 3 8 1.7400 - 1.6600 0.98 4102 156 0.2872 0.3104 REMARK 3 9 1.6600 - 1.6000 0.98 4111 135 0.3224 0.3564 REMARK 3 10 1.6000 - 1.5400 0.98 4086 127 0.3703 0.3816 REMARK 3 11 1.5400 - 1.5000 0.98 4048 142 0.4266 0.3844 REMARK 3 12 1.5000 - 1.4500 0.98 4049 152 0.5020 0.4720 REMARK 3 13 1.4500 - 1.4100 0.96 3975 160 0.5504 0.5611 REMARK 3 14 1.4100 - 1.3800 0.55 2295 67 0.6060 0.6100 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.311 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2543 REMARK 3 ANGLE : 0.775 3436 REMARK 3 CHIRALITY : 0.076 366 REMARK 3 PLANARITY : 0.008 446 REMARK 3 DIHEDRAL : 14.254 972 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9163 4.1734 -1.3372 REMARK 3 T TENSOR REMARK 3 T11: 0.4818 T22: 0.4737 REMARK 3 T33: 0.2048 T12: 0.0080 REMARK 3 T13: 0.0098 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 0.7714 L22: 2.6305 REMARK 3 L33: 2.1655 L12: 0.2780 REMARK 3 L13: 0.0926 L23: 0.3128 REMARK 3 S TENSOR REMARK 3 S11: 0.0353 S12: 0.5160 S13: 0.1726 REMARK 3 S21: -0.7826 S22: -0.0187 S23: -0.1101 REMARK 3 S31: -0.7362 S32: 0.0505 S33: -0.0154 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.6057 -21.5857 14.2815 REMARK 3 T TENSOR REMARK 3 T11: 0.1915 T22: 0.4307 REMARK 3 T33: 0.2612 T12: 0.0012 REMARK 3 T13: 0.0116 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 3.1737 L22: 3.8855 REMARK 3 L33: 2.5809 L12: 0.4338 REMARK 3 L13: -0.3566 L23: -0.3658 REMARK 3 S TENSOR REMARK 3 S11: -0.0173 S12: -0.2006 S13: -0.3889 REMARK 3 S21: 0.3495 S22: 0.0848 S23: 0.2931 REMARK 3 S31: 0.3411 S32: -0.3431 S33: -0.0358 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5248 -8.5579 12.9880 REMARK 3 T TENSOR REMARK 3 T11: 0.1476 T22: 0.3619 REMARK 3 T33: 0.1557 T12: 0.0056 REMARK 3 T13: 0.0125 T23: -0.0320 REMARK 3 L TENSOR REMARK 3 L11: 1.4863 L22: 2.1164 REMARK 3 L33: 1.5271 L12: 0.2703 REMARK 3 L13: -0.3205 L23: 0.4876 REMARK 3 S TENSOR REMARK 3 S11: 0.0236 S12: -0.0291 S13: -0.0152 REMARK 3 S21: -0.1601 S22: 0.1351 S23: -0.2103 REMARK 3 S31: -0.1117 S32: 0.2042 S33: -0.1501 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0253 0.7357 16.0539 REMARK 3 T TENSOR REMARK 3 T11: 0.1553 T22: 0.2978 REMARK 3 T33: 0.1398 T12: 0.0402 REMARK 3 T13: 0.0012 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 1.7340 L22: 1.1965 REMARK 3 L33: 1.3552 L12: 0.2689 REMARK 3 L13: 0.1348 L23: 0.6812 REMARK 3 S TENSOR REMARK 3 S11: 0.0214 S12: -0.0844 S13: 0.0860 REMARK 3 S21: -0.1256 S22: -0.0081 S23: 0.0135 REMARK 3 S31: -0.1498 S32: -0.0842 S33: -0.0234 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 295 THROUGH 311 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3387 11.5921 29.5175 REMARK 3 T TENSOR REMARK 3 T11: 0.2473 T22: 0.3632 REMARK 3 T33: 0.1979 T12: 0.0139 REMARK 3 T13: 0.0284 T23: -0.0307 REMARK 3 L TENSOR REMARK 3 L11: 5.9641 L22: 2.8459 REMARK 3 L33: 3.6857 L12: 0.7933 REMARK 3 L13: 2.8731 L23: 1.5395 REMARK 3 S TENSOR REMARK 3 S11: -0.2056 S12: 0.1369 S13: 0.0680 REMARK 3 S21: -0.1784 S22: 0.1412 S23: -0.1071 REMARK 3 S31: -0.1676 S32: 0.1421 S33: -0.0750 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 403 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0024 -4.0920 14.6104 REMARK 3 T TENSOR REMARK 3 T11: 0.2697 T22: 0.1055 REMARK 3 T33: 0.1815 T12: -0.0829 REMARK 3 T13: 0.0750 T23: -0.1127 REMARK 3 L TENSOR REMARK 3 L11: 2.0000 L22: 2.0000 REMARK 3 L33: 2.0000 L12: 2.0000 REMARK 3 L13: 2.0000 L23: 2.0000 REMARK 3 S TENSOR REMARK 3 S11: -0.1239 S12: -0.1037 S13: 0.2540 REMARK 3 S21: -0.0796 S22: -0.1083 S23: 0.3024 REMARK 3 S31: -0.1618 S32: 0.0697 S33: 0.2757 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 404 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9518 -7.7205 24.0203 REMARK 3 T TENSOR REMARK 3 T11: 0.6948 T22: 0.7333 REMARK 3 T33: 0.6710 T12: 0.1255 REMARK 3 T13: -0.0694 T23: -0.0691 REMARK 3 L TENSOR REMARK 3 L11: 7.3158 L22: 8.8916 REMARK 3 L33: 3.7136 L12: -7.8950 REMARK 3 L13: -1.9994 L23: 3.1983 REMARK 3 S TENSOR REMARK 3 S11: -0.4769 S12: -0.5029 S13: -0.9585 REMARK 3 S21: 1.0521 S22: 0.8815 S23: 1.5023 REMARK 3 S31: 0.0096 S32: 0.1741 S33: -0.3298 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9RZH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1292149208. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.94056 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59878 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.380 REMARK 200 RESOLUTION RANGE LOW (A) : 58.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.9 REMARK 200 DATA REDUNDANCY IN SHELL : 12.00 REMARK 200 R MERGE FOR SHELL (I) : 4.10700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: GOLD BAR SHAPED CRYSTALS WITH VARIOUS SIZE UP TO 0.5 REMARK 200 MILLIMETER IN LENGTH. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: UNDER ANAEROBIC CONDITION. 25-28% REMARK 280 PEG3350, 0.1 M CHES PH 9.5, 3 MM AMMONIUM IRON (II) SULPHATE REMARK 280 HEXAHYDRATE, 30 MM ACC. MICRO-SEEDING WAS CARRIED OUT. THE REMARK 280 CRYSTAL WAS SOAKED WITH 500 MM SODIUM BICARBONATE IN THE WELL REMARK 280 SOLUTION FOR 5 HOURS., EVAPORATION, TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.79350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.40450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.14600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.40450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.79350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.14600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 75 REMARK 465 LYS A 76 REMARK 465 LYS A 77 REMARK 465 GLU A 78 REMARK 465 GLU A 79 REMARK 465 GLU A 80 REMARK 465 ILE A 312 REMARK 465 ALA A 313 REMARK 465 THR A 314 REMARK 465 ALA A 315 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H THR A 265 O HOH A 504 1.53 REMARK 500 O HOH A 696 O HOH A 731 1.83 REMARK 500 O HOH A 725 O HOH A 737 1.91 REMARK 500 O HOH A 679 O HOH A 692 2.01 REMARK 500 O HOH A 630 O HOH A 683 2.15 REMARK 500 O HOH A 709 O HOH A 716 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 613 O HOH A 720 4445 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 73 -84.00 -64.34 REMARK 500 LYS A 82 118.25 -165.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 178 NE2 REMARK 620 2 ASP A 180 OD1 94.9 REMARK 620 3 HIS A 235 NE2 87.2 92.7 REMARK 620 4 1AC A 402 O 88.0 175.0 91.5 REMARK 620 5 1AC A 402 N 170.4 93.8 88.6 83.5 REMARK 620 6 BCT A 404 O1 89.9 87.3 177.1 88.6 94.3 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9QIF RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH DIFFERENT SUBSTRATE REMARK 900 RELATED ID: 9RSZ RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH DIFFERENT SUBSTRATE REMARK 900 RELATED ID: 9RT1 RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH DIFFERENT SUBSTRATE REMARK 900 RELATED ID: 9RT0 RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH DIFFERENT SUBSTRATE REMARK 900 RELATED ID: 9RSY RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH DIFFERENT SUBSTRATE REMARK 900 RELATED ID: 9RT5 RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH DIFFERENT SUBSTRATE DBREF 9RZH A 22 315 UNP W1NXW4 W1NXW4_AMBTC 1 294 SEQADV 9RZH GLY A 2 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZH PHE A 3 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZH SER A 4 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZH PHE A 5 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZH PRO A 6 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZH VAL A 7 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZH VAL A 8 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZH ASP A 9 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZH LEU A 10 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZH GLN A 11 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZH GLU A 12 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZH LEU A 13 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZH GLU A 14 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZH GLY A 15 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZH GLY A 16 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZH GLU A 17 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZH ARG A 18 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZH LYS A 19 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZH SER A 20 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZH ALA A 21 UNP W1NXW4 EXPRESSION TAG SEQRES 1 A 314 GLY PHE SER PHE PRO VAL VAL ASP LEU GLN GLU LEU GLU SEQRES 2 A 314 GLY GLY GLU ARG LYS SER ALA MET GLU LEU ILE ASN ASP SEQRES 3 A 314 ALA CYS GLU ASN TRP GLY PHE PHE GLU VAL VAL ASN HIS SEQRES 4 A 314 GLY LEU SER GLN GLU PHE MET ASP GLN VAL GLU SER LEU SEQRES 5 A 314 THR LYS GLU HIS TYR ARG LYS TYR MET GLU LYS ARG PHE SEQRES 6 A 314 LYS ASP GLU VAL ALA GLU ARG VAL LEU LYS LYS GLU GLU SEQRES 7 A 314 GLU VAL LYS ASP LEU ASP TRP GLU SER THR PHE TYR LEU SEQRES 8 A 314 ARG HIS LEU PRO SER SER ASN ILE SER GLU ILE PRO ASP SEQRES 9 A 314 LEU ASP HIS GLU TYR ARG ARG VAL MET KCX GLU PHE ALA SEQRES 10 A 314 GLY VAL ILE GLU LYS LEU ALA GLU LYS LEU LEU ASP VAL SEQRES 11 A 314 LEU CYS GLU ASN LEU GLY LEU GLU LYS GLY TYR LEU LYS SEQRES 12 A 314 LYS ALA PHE GLN GLY LYS ASN GLY TYR PRO THR PHE GLY SEQRES 13 A 314 THR LYS VAL SER SER TYR PRO PRO CYS PRO ARG PRO GLU SEQRES 14 A 314 LEU VAL KCX GLY LEU ARG ALA HIS THR ASP ALA GLY GLY SEQRES 15 A 314 LEU VAL LEU LEU PHE GLN ASP PRO GLN VAL SER GLY LEU SEQRES 16 A 314 GLN LEU LEU LYS ASP GLY GLU TRP VAL ASP VAL PRO PRO SEQRES 17 A 314 LEU ARG HIS SER ILE VAL ILE ASN ILE GLY ASP GLN LEU SEQRES 18 A 314 GLU VAL ILE THR ASN GLY ARG TYR LYS SER VAL MET HIS SEQRES 19 A 314 ARG VAL VAL ALA GLN THR ASN GLY ASN ARG MET SER ILE SEQRES 20 A 314 ALA SER PHE TYR ASN PRO GLY SER ASP ALA VAL ILE PHE SEQRES 21 A 314 PRO ALA PRO THR LEU LEU LYS LYS GLU THR ALA GLU TYR SEQRES 22 A 314 PRO LYS PHE VAL PHE GLU ASP TYR MET LYS LEU TYR VAL SEQRES 23 A 314 GLY GLN LYS PHE GLN ALA LYS GLU PRO ARG PHE GLU THR SEQRES 24 A 314 MET LYS ALA MET GLU THR VAL SER LEU GLY PRO ILE ALA SEQRES 25 A 314 THR ALA MODRES 9RZH KCX A 115 LYS MODIFIED RESIDUE MODRES 9RZH KCX A 173 LYS MODIFIED RESIDUE HET KCX A 115 23 HET KCX A 173 23 HET FE2 A 401 1 HET 1AC A 402 13 HET NHE A 403 29 HET BCT A 404 5 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM FE2 FE (II) ION HETNAM 1AC 1-AMINOCYCLOPROPANECARBOXYLIC ACID HETNAM NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID HETNAM BCT BICARBONATE ION HETSYN NHE N-CYCLOHEXYLTAURINE; CHES FORMUL 1 KCX 2(C7 H14 N2 O4) FORMUL 2 FE2 FE 2+ FORMUL 3 1AC C4 H7 N O2 FORMUL 4 NHE C8 H17 N O3 S FORMUL 5 BCT C H O3 1- FORMUL 6 HOH *237(H2 O) HELIX 1 AA1 GLN A 11 GLY A 15 5 5 HELIX 2 AA2 GLU A 17 TRP A 32 1 16 HELIX 3 AA3 SER A 43 VAL A 74 1 32 HELIX 4 AA4 ASN A 99 ILE A 103 5 5 HELIX 5 AA5 ASP A 107 GLY A 137 1 31 HELIX 6 AA6 GLY A 141 PHE A 147 1 7 HELIX 7 AA7 GLY A 219 THR A 226 1 8 HELIX 8 AA8 ALA A 263 LYS A 268 5 6 HELIX 9 AA9 PHE A 279 LYS A 290 1 12 HELIX 10 AB1 ALA A 293 GLU A 305 1 13 HELIX 11 AB2 THR A 306 SER A 308 5 3 SHEET 1 AA1 7 VAL A 7 ASP A 9 0 SHEET 2 AA1 7 PHE A 34 VAL A 38 1 O GLU A 36 N VAL A 8 SHEET 3 AA1 7 ILE A 214 ILE A 218 -1 O ILE A 216 N PHE A 35 SHEET 4 AA1 7 LEU A 184 GLN A 189 -1 N LEU A 187 O VAL A 215 SHEET 5 AA1 7 ARG A 245 ASN A 253 -1 O SER A 250 N LEU A 186 SHEET 6 AA1 7 THR A 155 TYR A 163 -1 N THR A 155 O ASN A 253 SHEET 7 AA1 7 SER A 88 LEU A 95 -1 N HIS A 94 O PHE A 156 SHEET 1 AA2 4 LEU A 175 HIS A 178 0 SHEET 2 AA2 4 HIS A 235 VAL A 237 -1 O HIS A 235 N HIS A 178 SHEET 3 AA2 4 LEU A 196 LYS A 200 -1 N GLN A 197 O ARG A 236 SHEET 4 AA2 4 GLU A 203 ASP A 206 -1 O VAL A 205 N LEU A 198 SHEET 1 AA3 2 VAL A 259 ILE A 260 0 SHEET 2 AA3 2 PHE A 277 VAL A 278 -1 O PHE A 277 N ILE A 260 LINK C MET A 114 N KCX A 115 1555 1555 1.33 LINK C KCX A 115 N GLU A 116 1555 1555 1.33 LINK C VAL A 172 N KCX A 173 1555 1555 1.32 LINK C KCX A 173 N GLY A 174 1555 1555 1.33 LINK NE2 HIS A 178 FE FE2 A 401 1555 1555 2.20 LINK OD1 ASP A 180 FE FE2 A 401 1555 1555 2.07 LINK NE2 HIS A 235 FE FE2 A 401 1555 1555 2.15 LINK FE FE2 A 401 O 1AC A 402 1555 1555 1.92 LINK FE FE2 A 401 N 1AC A 402 1555 1555 2.24 LINK FE FE2 A 401 O1 BCT A 404 1555 1555 2.18 CISPEP 1 LEU A 95 PRO A 96 0 4.48 CRYST1 43.587 58.292 114.809 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022943 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017155 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008710 0.00000 CONECT 1726 1741 CONECT 1741 1726 1742 1753 CONECT 1742 1741 1743 1748 1754 CONECT 1743 1742 1744 1755 1756 CONECT 1744 1743 1745 1757 1758 CONECT 1745 1744 1746 1759 1760 CONECT 1746 1745 1747 1761 1762 CONECT 1747 1746 1750 1763 CONECT 1748 1742 1749 1764 CONECT 1749 1748 CONECT 1750 1747 1751 1752 CONECT 1751 1750 CONECT 1752 1750 CONECT 1753 1741 CONECT 1754 1742 CONECT 1755 1743 CONECT 1756 1743 CONECT 1757 1744 CONECT 1758 1744 CONECT 1759 1745 CONECT 1760 1745 CONECT 1761 1746 CONECT 1762 1746 CONECT 1763 1747 CONECT 1764 1748 CONECT 2659 2673 CONECT 2673 2659 2674 2685 CONECT 2674 2673 2675 2680 2686 CONECT 2675 2674 2676 2687 2688 CONECT 2676 2675 2677 2689 2690 CONECT 2677 2676 2678 2691 2692 CONECT 2678 2677 2679 2693 2694 CONECT 2679 2678 2682 2695 CONECT 2680 2674 2681 2696 CONECT 2681 2680 CONECT 2682 2679 2683 2684 CONECT 2683 2682 CONECT 2684 2682 CONECT 2685 2673 CONECT 2686 2674 CONECT 2687 2675 CONECT 2688 2675 CONECT 2689 2676 CONECT 2690 2676 CONECT 2691 2677 CONECT 2692 2677 CONECT 2693 2678 CONECT 2694 2678 CONECT 2695 2679 CONECT 2696 2680 CONECT 2765 4896 CONECT 2793 4896 CONECT 3662 4896 CONECT 4896 2765 2793 3662 4902 CONECT 4896 4903 4940 CONECT 4897 4898 4899 4905 4906 CONECT 4898 4897 4899 4907 4908 CONECT 4899 4897 4898 4900 4903 CONECT 4900 4899 4901 4902 CONECT 4901 4900 CONECT 4902 4896 4900 CONECT 4903 4896 4899 4904 4909 CONECT 4904 4903 CONECT 4905 4897 CONECT 4906 4897 CONECT 4907 4898 CONECT 4908 4898 CONECT 4909 4903 CONECT 4910 4911 4922 4923 4924 CONECT 4911 4910 4912 4925 4926 CONECT 4912 4911 4913 4914 4927 CONECT 4913 4912 4921 4928 4929 CONECT 4914 4912 4915 4930 CONECT 4915 4914 4916 4931 4932 CONECT 4916 4915 4917 4933 4934 CONECT 4917 4916 4918 4919 4920 CONECT 4918 4917 CONECT 4919 4917 CONECT 4920 4917 CONECT 4921 4913 4922 4935 4936 CONECT 4922 4910 4921 4937 4938 CONECT 4923 4910 CONECT 4924 4910 CONECT 4925 4911 CONECT 4926 4911 CONECT 4927 4912 CONECT 4928 4913 CONECT 4929 4913 CONECT 4930 4914 CONECT 4931 4915 CONECT 4932 4915 CONECT 4933 4916 CONECT 4934 4916 CONECT 4935 4921 CONECT 4936 4921 CONECT 4937 4922 CONECT 4938 4922 CONECT 4939 4940 4941 4942 CONECT 4940 4896 4939 CONECT 4941 4939 CONECT 4942 4939 4943 CONECT 4943 4942 MASTER 413 0 6 11 13 0 0 6 2710 1 102 25 END