HEADER OXIDOREDUCTASE 18-JUL-25 9S1J TITLE ISOPENICILLIN N SYNTHASE Q280A AND L282A VARIANT IN COMPLEX WITH FE TITLE 2 AND ACV UNDER ANAEROBIC CONDITIONS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPENICILLIN N SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IPNS; COMPND 5 EC: 1.21.3.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS NIDULANS FGSC A4; SOURCE 3 ORGANISM_TAXID: 227321; SOURCE 4 GENE: IPNA, IPS, AN2622; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ISOPENICILLIN N SYNTHASE, IPNS, PENICILLIN, AMTIBIOTIC, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.JABBARY,P.RABE,C.J.SCHOFIELD REVDAT 1 29-JUL-26 9S1J 0 JRNL AUTH M.JABBARY,P.RABE,C.J.SCHOFIELD JRNL TITL ISOPENICILLIN N SYNTHASE Q280A AND L282A VARIANT IN COMPLEX JRNL TITL 2 WITH FE AND ACV UNDER ANAEROBIC CONDITIONS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 34828 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.760 REMARK 3 FREE R VALUE TEST SET COUNT : 3772 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 59.3800 - 5.0400 1.00 2286 140 0.1764 0.1685 REMARK 3 2 5.0400 - 4.0000 1.00 2272 131 0.1365 0.1719 REMARK 3 3 4.0000 - 3.4900 1.00 2322 145 0.1442 0.1517 REMARK 3 4 3.4900 - 3.1800 1.00 2295 135 0.1751 0.1642 REMARK 3 5 3.1700 - 2.9500 1.00 2267 139 0.1888 0.2000 REMARK 3 6 2.9500 - 2.7700 1.00 2302 140 0.1948 0.2508 REMARK 3 7 2.7700 - 2.6300 1.00 2272 144 0.1930 0.2733 REMARK 3 8 2.6300 - 2.5200 1.00 2290 138 0.2023 0.2469 REMARK 3 9 2.5200 - 2.4200 1.00 2284 144 0.2002 0.2231 REMARK 3 10 2.4200 - 2.3400 1.00 2269 142 0.2035 0.2697 REMARK 3 11 2.3400 - 2.2700 1.00 2310 142 0.2081 0.2381 REMARK 3 12 2.2700 - 2.2000 1.00 2288 144 0.2109 0.2663 REMARK 3 13 2.2000 - 2.1400 1.00 2265 139 0.2049 0.2489 REMARK 3 14 2.1400 - 2.0900 1.00 2304 137 0.2048 0.2412 REMARK 3 15 2.0900 - 2.0400 1.00 2278 141 0.2339 0.2926 REMARK 3 16 2.0400 - 2.0000 1.00 2267 139 0.2204 0.3035 REMARK 3 17 2.0000 - 1.9600 1.00 2329 142 0.2397 0.2422 REMARK 3 18 1.9600 - 1.9200 1.00 2240 134 0.2499 0.2350 REMARK 3 19 1.9200 - 1.8900 1.00 2319 144 0.2669 0.3413 REMARK 3 20 1.8900 - 1.8600 1.00 2287 142 0.2725 0.3255 REMARK 3 21 1.8600 - 1.8300 1.00 2234 138 0.2669 0.2990 REMARK 3 22 1.8300 - 1.8000 1.00 2341 141 0.2707 0.2840 REMARK 3 23 1.8000 - 1.7700 1.00 2305 142 0.2844 0.2986 REMARK 3 24 1.7700 - 1.7500 1.00 2227 135 0.2943 0.3768 REMARK 3 25 1.7500 - 1.7200 1.00 2323 142 0.3112 0.3138 REMARK 3 26 1.7200 - 1.7000 0.99 2279 134 0.3239 0.3215 REMARK 3 27 1.7000 - 1.6800 0.99 2237 138 0.3530 0.3804 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.242 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.278 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2690 REMARK 3 ANGLE : 0.567 3676 REMARK 3 CHIRALITY : 0.046 381 REMARK 3 PLANARITY : 0.005 488 REMARK 3 DIHEDRAL : 11.989 964 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5235 -3.4884 12.5656 REMARK 3 T TENSOR REMARK 3 T11: 0.1667 T22: 0.2613 REMARK 3 T33: 0.2099 T12: -0.0391 REMARK 3 T13: 0.0280 T23: 0.0381 REMARK 3 L TENSOR REMARK 3 L11: 1.5745 L22: 2.2982 REMARK 3 L33: 3.2459 L12: 0.0049 REMARK 3 L13: 0.0837 L23: 0.1089 REMARK 3 S TENSOR REMARK 3 S11: 0.0576 S12: -0.1632 S13: -0.1193 REMARK 3 S21: 0.2164 S22: -0.1185 S23: 0.4015 REMARK 3 S31: 0.1451 S32: -0.4302 S33: -0.0740 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5286 1.9320 -3.4000 REMARK 3 T TENSOR REMARK 3 T11: 0.1335 T22: 0.1344 REMARK 3 T33: 0.1758 T12: -0.0384 REMARK 3 T13: -0.0237 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.8435 L22: 0.7991 REMARK 3 L33: 2.9205 L12: -0.1523 REMARK 3 L13: -0.2770 L23: -0.5088 REMARK 3 S TENSOR REMARK 3 S11: 0.0558 S12: 0.0282 S13: -0.0738 REMARK 3 S21: -0.0882 S22: 0.0742 S23: 0.1344 REMARK 3 S31: -0.0346 S32: -0.2359 S33: -0.0996 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9100 10.3426 -13.8399 REMARK 3 T TENSOR REMARK 3 T11: 0.1489 T22: 0.1564 REMARK 3 T33: 0.1298 T12: 0.0114 REMARK 3 T13: -0.0035 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.6959 L22: 1.2534 REMARK 3 L33: 2.7020 L12: 0.4834 REMARK 3 L13: 0.0455 L23: -0.4751 REMARK 3 S TENSOR REMARK 3 S11: -0.0643 S12: 0.1811 S13: 0.0354 REMARK 3 S21: -0.2117 S22: 0.0701 S23: -0.0558 REMARK 3 S31: -0.1262 S32: -0.0155 S33: -0.0068 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6793 9.5663 5.6827 REMARK 3 T TENSOR REMARK 3 T11: 0.1636 T22: 0.1579 REMARK 3 T33: 0.1837 T12: -0.0202 REMARK 3 T13: 0.0055 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.6694 L22: 1.2997 REMARK 3 L33: 3.0597 L12: -0.2467 REMARK 3 L13: 0.0848 L23: -0.8392 REMARK 3 S TENSOR REMARK 3 S11: 0.0064 S12: -0.0736 S13: 0.0643 REMARK 3 S21: 0.0918 S22: -0.0683 S23: -0.0259 REMARK 3 S31: -0.2400 S32: 0.0494 S33: 0.0108 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 235 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4744 -9.8847 -8.3772 REMARK 3 T TENSOR REMARK 3 T11: 0.2808 T22: 0.1762 REMARK 3 T33: 0.2446 T12: -0.0248 REMARK 3 T13: -0.0377 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.6440 L22: 1.3014 REMARK 3 L33: 2.0574 L12: 0.2903 REMARK 3 L13: 0.1010 L23: -0.1680 REMARK 3 S TENSOR REMARK 3 S11: 0.0306 S12: 0.0905 S13: -0.1679 REMARK 3 S21: -0.3138 S22: 0.0236 S23: 0.1021 REMARK 3 S31: 0.4948 S32: -0.0655 S33: -0.0674 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 236 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3167 -7.4868 1.0106 REMARK 3 T TENSOR REMARK 3 T11: 0.1789 T22: 0.1529 REMARK 3 T33: 0.1899 T12: -0.0060 REMARK 3 T13: -0.0089 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.8553 L22: 1.4340 REMARK 3 L33: 2.4664 L12: 0.3876 REMARK 3 L13: 0.1199 L23: -0.0482 REMARK 3 S TENSOR REMARK 3 S11: 0.0334 S12: -0.0788 S13: -0.1666 REMARK 3 S21: -0.0598 S22: 0.0540 S23: 0.0526 REMARK 3 S31: 0.2114 S32: -0.0199 S33: -0.0568 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 287 THROUGH 324 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9312 2.0729 5.8422 REMARK 3 T TENSOR REMARK 3 T11: 0.2011 T22: 0.2881 REMARK 3 T33: 0.2389 T12: -0.0086 REMARK 3 T13: -0.0011 T23: 0.0220 REMARK 3 L TENSOR REMARK 3 L11: 1.8356 L22: 2.1392 REMARK 3 L33: 3.0827 L12: 0.2986 REMARK 3 L13: -0.1282 L23: -1.3828 REMARK 3 S TENSOR REMARK 3 S11: 0.1128 S12: -0.0619 S13: -0.1552 REMARK 3 S21: 0.0585 S22: -0.2116 S23: -0.2937 REMARK 3 S31: 0.2511 S32: 0.6478 S33: 0.1154 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9S1J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1292149535. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34828 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 59.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.16300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.80 REMARK 200 R MERGE FOR SHELL (I) : 3.02200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NEEDLE MORPHOLOGY, 4 UM X 4 UM X 200 UM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 M LI2SO4, 0.1 M TRIS PH 8.3, BATCH REMARK 280 MODE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.11700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.12500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.84950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.12500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.11700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.84950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 ILE A 325 REMARK 465 ASN A 326 REMARK 465 LYS A 327 REMARK 465 ASN A 328 REMARK 465 GLY A 329 REMARK 465 GLN A 330 REMARK 465 THR A 331 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 4 CG2 REMARK 470 LYS A 11 CE NZ REMARK 470 LYS A 59 CE NZ REMARK 470 ARG A 76 NE CZ NH1 NH2 REMARK 470 LYS A 80 CD CE NZ REMARK 470 LYS A 120 NZ REMARK 470 LYS A 134 NZ REMARK 470 GLU A 167 CG CD OE1 OE2 REMARK 470 GLU A 197 CD OE1 OE2 REMARK 470 LYS A 201 CE NZ REMARK 470 LYS A 208 NZ REMARK 470 GLU A 243 CD OE1 OE2 REMARK 470 LYS A 266 CE NZ REMARK 470 LYS A 305 CB CG CD CE NZ REMARK 470 VAL A 322 CG1 CG2 REMARK 470 LEU A 324 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 501 O HOH A 613 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 -108.46 -95.72 REMARK 500 HIS A 82 61.57 -107.71 REMARK 500 LYS A 97 -41.05 -132.67 REMARK 500 LEU A 106 -169.19 -113.73 REMARK 500 THR A 123 -6.48 74.82 REMARK 500 ASN A 230 -27.98 -150.12 REMARK 500 LEU A 288 -159.24 -90.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 406 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 214 NE2 REMARK 620 2 ASP A 216 OD1 99.3 REMARK 620 3 HIS A 270 NE2 88.4 89.6 REMARK 620 4 TRS A 405 N 167.9 92.7 93.3 REMARK 620 5 TRS A 405 O2 84.7 169.5 100.3 83.2 REMARK 620 6 HOH A 538 O 87.8 80.8 168.9 92.6 89.7 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6ZAE RELATED DB: PDB DBREF 9S1J A 1 331 UNP P05326 IPNA_EMENI 1 331 SEQADV 9S1J ALA A 280 UNP P05326 GLN 280 ENGINEERED MUTATION SEQADV 9S1J ALA A 282 UNP P05326 LEU 282 ENGINEERED MUTATION SEQRES 1 A 331 MET GLY SER VAL SER LYS ALA ASN VAL PRO LYS ILE ASP SEQRES 2 A 331 VAL SER PRO LEU PHE GLY ASP ASP GLN ALA ALA LYS MET SEQRES 3 A 331 ARG VAL ALA GLN GLN ILE ASP ALA ALA SER ARG ASP THR SEQRES 4 A 331 GLY PHE PHE TYR ALA VAL ASN HIS GLY ILE ASN VAL GLN SEQRES 5 A 331 ARG LEU SER GLN LYS THR LYS GLU PHE HIS MET SER ILE SEQRES 6 A 331 THR PRO GLU GLU LYS TRP ASP LEU ALA ILE ARG ALA TYR SEQRES 7 A 331 ASN LYS GLU HIS GLN ASP GLN VAL ARG ALA GLY TYR TYR SEQRES 8 A 331 LEU SER ILE PRO GLY LYS LYS ALA VAL GLU SER PHE CYS SEQRES 9 A 331 TYR LEU ASN PRO ASN PHE THR PRO ASP HIS PRO ARG ILE SEQRES 10 A 331 GLN ALA LYS THR PRO THR HIS GLU VAL ASN VAL TRP PRO SEQRES 11 A 331 ASP GLU THR LYS HIS PRO GLY PHE GLN ASP PHE ALA GLU SEQRES 12 A 331 GLN TYR TYR TRP ASP VAL PHE GLY LEU SER SER ALA LEU SEQRES 13 A 331 LEU LYS GLY TYR ALA LEU ALA LEU GLY LYS GLU GLU ASN SEQRES 14 A 331 PHE PHE ALA ARG HIS PHE LYS PRO ASP ASP THR LEU ALA SEQRES 15 A 331 SER VAL VAL LEU ILE ARG TYR PRO TYR LEU ASP PRO TYR SEQRES 16 A 331 PRO GLU ALA ALA ILE LYS THR ALA ALA ASP GLY THR LYS SEQRES 17 A 331 LEU SER PHE GLU TRP HIS GLU ASP VAL SER LEU ILE THR SEQRES 18 A 331 VAL LEU TYR GLN SER ASN VAL GLN ASN LEU GLN VAL GLU SEQRES 19 A 331 THR ALA ALA GLY TYR GLN ASP ILE GLU ALA ASP ASP THR SEQRES 20 A 331 GLY TYR LEU ILE ASN CYS GLY SER TYR MET ALA HIS LEU SEQRES 21 A 331 THR ASN ASN TYR TYR LYS ALA PRO ILE HIS ARG VAL LYS SEQRES 22 A 331 TRP VAL ASN ALA GLU ARG ALA SER ALA PRO PHE PHE VAL SEQRES 23 A 331 ASN LEU GLY TYR ASP SER VAL ILE ASP PRO PHE ASP PRO SEQRES 24 A 331 ARG GLU PRO ASN GLY LYS SER ASP ARG GLU PRO LEU SER SEQRES 25 A 331 TYR GLY ASP TYR LEU GLN ASN GLY LEU VAL SER LEU ILE SEQRES 26 A 331 ASN LYS ASN GLY GLN THR HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET ACV A 404 24 HET TRS A 405 8 HET FE A 406 1 HETNAM SO4 SULFATE ION HETNAM ACV L-D-(A-AMINOADIPOYL)-L-CYSTEINYL-D-VALINE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM FE FE (III) ION HETSYN TRS TRIS BUFFER FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 ACV C14 H25 N3 O6 S FORMUL 6 TRS C4 H12 N O3 1+ FORMUL 7 FE FE 3+ FORMUL 8 HOH *276(H2 O) HELIX 1 AA1 SER A 15 GLY A 19 5 5 HELIX 2 AA2 ASP A 21 ASP A 38 1 18 HELIX 3 AA3 ASN A 50 ILE A 65 1 16 HELIX 4 AA4 THR A 66 ALA A 74 1 9 HELIX 5 AA5 HIS A 114 ALA A 119 1 6 HELIX 6 AA6 GLY A 137 LEU A 164 1 28 HELIX 7 AA7 PHE A 171 PHE A 175 5 5 HELIX 8 AA8 PRO A 196 ILE A 200 5 5 HELIX 9 AA9 GLY A 254 THR A 261 1 8 HELIX 10 AB1 TYR A 313 LEU A 321 1 9 SHEET 1 AA1 6 SER A 5 LYS A 6 0 SHEET 2 AA1 6 GLY A 238 ASP A 241 1 O ASP A 241 N SER A 5 SHEET 3 AA1 6 LEU A 231 THR A 235 -1 N VAL A 233 O GLN A 240 SHEET 4 AA1 6 HIS A 270 LYS A 273 -1 O ARG A 271 N GLN A 232 SHEET 5 AA1 6 LYS A 208 HIS A 214 -1 N SER A 210 O VAL A 272 SHEET 6 AA1 6 LYS A 201 THR A 202 -1 N LYS A 201 O LEU A 209 SHEET 1 AA2 8 LYS A 11 ASP A 13 0 SHEET 2 AA2 8 PHE A 41 VAL A 45 1 O TYR A 43 N ILE A 12 SHEET 3 AA2 8 TYR A 249 CYS A 253 -1 O ILE A 251 N PHE A 42 SHEET 4 AA2 8 ILE A 220 GLN A 225 -1 N THR A 221 O ASN A 252 SHEET 5 AA2 8 ARG A 279 VAL A 286 -1 O ALA A 282 N TYR A 224 SHEET 6 AA2 8 SER A 183 TYR A 189 -1 N ILE A 187 O SER A 281 SHEET 7 AA2 8 GLU A 101 TYR A 105 -1 N PHE A 103 O LEU A 186 SHEET 8 AA2 8 GLY A 89 TYR A 91 -1 N TYR A 91 O SER A 102 SHEET 1 AA3 2 VAL A 293 ILE A 294 0 SHEET 2 AA3 2 LEU A 311 SER A 312 -1 O LEU A 311 N ILE A 294 LINK NE2 HIS A 214 FE FE A 406 1555 1555 2.12 LINK OD1 ASP A 216 FE FE A 406 1555 1555 2.04 LINK NE2 HIS A 270 FE FE A 406 1555 1555 2.19 LINK N CTRS A 405 FE FE A 406 1555 1555 2.11 LINK O2 CTRS A 405 FE FE A 406 1555 1555 2.28 LINK FE FE A 406 O HOH A 538 1555 1555 2.29 CISPEP 1 ASP A 193 PRO A 194 0 0.75 CRYST1 40.234 73.699 100.250 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024855 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013569 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009975 0.00000 CONECT 1704 2618 CONECT 1720 2618 CONECT 2147 2618 CONECT 2571 2572 2573 2574 2575 CONECT 2572 2571 CONECT 2573 2571 CONECT 2574 2571 CONECT 2575 2571 CONECT 2576 2577 2578 2579 2580 CONECT 2577 2576 CONECT 2578 2576 CONECT 2579 2576 CONECT 2580 2576 CONECT 2581 2582 2583 2584 2585 CONECT 2582 2581 CONECT 2583 2581 CONECT 2584 2581 CONECT 2585 2581 CONECT 2586 2587 2600 2601 CONECT 2587 2586 2588 2595 CONECT 2588 2587 2589 CONECT 2589 2588 2590 CONECT 2590 2589 2591 CONECT 2591 2590 2592 2596 CONECT 2592 2591 2593 CONECT 2593 2592 2594 2597 CONECT 2594 2593 2599 2602 CONECT 2595 2587 CONECT 2596 2591 CONECT 2597 2593 2598 CONECT 2598 2597 CONECT 2599 2594 CONECT 2600 2586 CONECT 2601 2586 CONECT 2602 2594 2603 CONECT 2603 2602 2604 2605 CONECT 2604 2603 2608 2609 CONECT 2605 2603 2606 2607 CONECT 2606 2605 CONECT 2607 2605 CONECT 2608 2604 CONECT 2609 2604 CONECT 2610 2611 2612 2613 2614 CONECT 2611 2610 2615 CONECT 2612 2610 2616 CONECT 2613 2610 2617 CONECT 2614 2610 2618 CONECT 2615 2611 CONECT 2616 2612 2618 CONECT 2617 2613 CONECT 2618 1704 1720 2147 2614 CONECT 2618 2616 2656 CONECT 2656 2618 MASTER 411 0 6 10 16 0 0 6 2863 1 53 26 END