HEADER PEPTIDE BINDING PROTEIN 21-JUL-25 9S2N TITLE TERNARY STRUCTURE OF 14-3-3S, CRAF V263A NS MUTANT PHOSPHOPEPTIDE TITLE 2 (PS259), AND COMPOUND 23 (1083848) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 14-3-3 PROTEIN SIGMA; COMPND 3 CHAIN: B, K; COMPND 4 SYNONYM: EPITHELIAL CELL MARKER PROTEIN 1,STRATIFIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RAF PROTO-ONCOGENE SERINE/THREONINE-PROTEIN KINASE; COMPND 8 CHAIN: H, S; COMPND 9 SYNONYM: PROTO-ONCOGENE C-RAF,CRAF,RAF-1; COMPND 10 EC: 2.7.11.1; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SFN, HME1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS PPI, 14-3-3, MOLECULAR GLUE, CRAF, PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.M.VIRTA,H.R.VICKERY,M.KONSTANTINIDOU,M.C.CRAWFORD,M.A.M.PENNINGS, AUTHOR 2 C.OTTMANN,L.BRUNSVELD,M.R.ARKIN REVDAT 1 22-APR-26 9S2N 0 JRNL AUTH J.M.VIRTA,H.R.VICKERY,M.KONSTANTINIDOU,M.C.CRAWFORD, JRNL AUTH 2 M.A.M.PENNINGS,C.OTTMANN,L.BRUNSVELD,M.R.ARKIN JRNL TITL RESTORING THE 14-3-3/CRAF REGULATORY INTERACTION IN NOONAN JRNL TITL 2 SYNDROME USING MOLECULAR GLUES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 (REFMACAT 0.4.105) REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 55622 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.996 REMARK 3 FREE R VALUE TEST SET COUNT : 2779 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3870 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE SET COUNT : 200 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3856 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 295 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.88000 REMARK 3 B22 (A**2) : 1.10500 REMARK 3 B33 (A**2) : 0.77500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.032 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3956 ; 0.011 ; 0.016 REMARK 3 BOND LENGTHS OTHERS (A): 3726 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5325 ; 1.145 ; 1.820 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8620 ; 0.491 ; 1.567 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 514 ; 5.685 ; 5.272 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 2 ; 3.951 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 733 ;13.909 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 586 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4610 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 854 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 840 ; 0.232 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 31 ; 0.135 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1973 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 226 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.028 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1956 ; 1.665 ; 1.901 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1956 ; 1.665 ; 1.901 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2438 ; 2.929 ; 3.409 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2439 ; 2.929 ; 3.410 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2000 ; 2.024 ; 2.095 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2000 ; 2.023 ; 2.095 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2887 ; 3.278 ; 3.745 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2888 ; 3.278 ; 3.745 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : B K REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B -4 B 301 NULL REMARK 3 1 K -4 K 301 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -4 B 231 REMARK 3 ORIGIN FOR THE GROUP (A): -25.5000 -21.7070 8.1950 REMARK 3 T TENSOR REMARK 3 T11: 0.0742 T22: 0.0022 REMARK 3 T33: 0.0180 T12: 0.0027 REMARK 3 T13: -0.0118 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.9750 L22: 3.0389 REMARK 3 L33: 1.1866 L12: -0.6451 REMARK 3 L13: 0.0915 L23: -0.7115 REMARK 3 S TENSOR REMARK 3 S11: 0.0096 S12: -0.0292 S13: -0.1256 REMARK 3 S21: -0.1851 S22: -0.0092 S23: 0.1148 REMARK 3 S31: 0.0305 S32: -0.0224 S33: -0.0004 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 255 H 263 REMARK 3 ORIGIN FOR THE GROUP (A): -19.2060 -14.6520 11.1430 REMARK 3 T TENSOR REMARK 3 T11: 0.1601 T22: 0.2015 REMARK 3 T33: 0.0649 T12: -0.0115 REMARK 3 T13: -0.0647 T23: 0.0352 REMARK 3 L TENSOR REMARK 3 L11: 15.0455 L22: 18.8946 REMARK 3 L33: 10.7230 L12: 5.5368 REMARK 3 L13: -4.8198 L23: -4.1508 REMARK 3 S TENSOR REMARK 3 S11: 0.3933 S12: -1.1723 S13: -0.3946 REMARK 3 S21: 0.5111 S22: -0.7112 S23: -0.8397 REMARK 3 S31: -0.5353 S32: 1.2470 S33: 0.3180 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : K -4 K 231 REMARK 3 ORIGIN FOR THE GROUP (A): 0.1360 -39.3000 29.1370 REMARK 3 T TENSOR REMARK 3 T11: 0.1395 T22: 0.1168 REMARK 3 T33: 0.0270 T12: 0.0002 REMARK 3 T13: -0.0030 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 3.5277 L22: 0.8088 REMARK 3 L33: 1.9917 L12: -0.1166 REMARK 3 L13: -0.8908 L23: -0.1627 REMARK 3 S TENSOR REMARK 3 S11: 0.0107 S12: -0.5489 S13: 0.1431 REMARK 3 S21: 0.1594 S22: 0.0545 S23: -0.0642 REMARK 3 S31: -0.0465 S32: 0.3060 S33: -0.0652 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : S 256 S 264 REMARK 3 ORIGIN FOR THE GROUP (A): -0.3480 -31.2320 31.2280 REMARK 3 T TENSOR REMARK 3 T11: 0.2158 T22: 0.1675 REMARK 3 T33: 0.3041 T12: 0.0546 REMARK 3 T13: 0.0599 T23: -0.0523 REMARK 3 L TENSOR REMARK 3 L11: 10.0813 L22: 9.4678 REMARK 3 L33: 20.1081 L12: 0.2985 REMARK 3 L13: -2.9304 L23: 2.7619 REMARK 3 S TENSOR REMARK 3 S11: 0.7049 S12: 0.0674 S13: 1.0100 REMARK 3 S21: -0.2936 S22: -0.0296 S23: 0.3163 REMARK 3 S31: -1.2593 S32: -0.4671 S33: -0.6754 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9S2N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1292148537. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.967697 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55674 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 58.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.095 M HEPES PH=7.1-7.7 0.19 M CACL2 REMARK 280 5% GLYCEROL 24-29% PEG400, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.68400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.92550 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.68400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.92550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, H, K, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS H 264 REMARK 465 GLN S 255 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 18 77.13 -108.25 REMARK 500 SER B 74 97.42 -169.80 REMARK 500 ALA K -3 -56.85 72.85 REMARK 500 ARG K 18 76.27 -106.14 REMARK 500 SER K 74 93.53 5.33 REMARK 500 ASP K 113 130.53 -175.14 REMARK 500 ALA S 263 60.03 -153.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 82 0.07 SIDE CHAIN REMARK 500 ARG B 142 0.09 SIDE CHAIN REMARK 500 ARG K 56 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 86 OE1 REMARK 620 2 GLU B 86 OE2 49.7 REMARK 620 3 GLU B 89 OE2 92.5 86.2 REMARK 620 4 HOH B 407 O 128.8 80.8 68.6 REMARK 620 5 HOH B 466 O 75.3 124.4 88.7 145.8 REMARK 620 6 HOH B 548 O 84.0 89.5 175.6 111.6 92.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 228 O REMARK 620 2 THR B 231 OXT 84.2 REMARK 620 3 HOH B 501 O 154.2 74.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 582 O REMARK 620 2 ASP K 113 OD1 118.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG K 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU K 86 OE1 REMARK 620 2 GLU K 86 OE2 49.9 REMARK 620 3 GLU K 89 OE2 83.6 111.1 REMARK 620 4 HOH K 425 O 106.7 76.7 169.7 REMARK 620 N 1 2 3 DBREF 9S2N B 1 231 UNP P31947 1433S_HUMAN 1 231 DBREF 9S2N H 255 264 UNP P04049 RAF1_HUMAN 255 264 DBREF 9S2N K 1 231 UNP P31947 1433S_HUMAN 1 231 DBREF 9S2N S 255 264 UNP P04049 RAF1_HUMAN 255 264 SEQADV 9S2N GLY B -4 UNP P31947 EXPRESSION TAG SEQADV 9S2N ALA B -3 UNP P31947 EXPRESSION TAG SEQADV 9S2N MET B -2 UNP P31947 EXPRESSION TAG SEQADV 9S2N GLY B -1 UNP P31947 EXPRESSION TAG SEQADV 9S2N SER B 0 UNP P31947 EXPRESSION TAG SEQADV 9S2N ALA H 263 UNP P04049 VAL 263 ENGINEERED MUTATION SEQADV 9S2N GLY K -4 UNP P31947 EXPRESSION TAG SEQADV 9S2N ALA K -3 UNP P31947 EXPRESSION TAG SEQADV 9S2N MET K -2 UNP P31947 EXPRESSION TAG SEQADV 9S2N GLY K -1 UNP P31947 EXPRESSION TAG SEQADV 9S2N SER K 0 UNP P31947 EXPRESSION TAG SEQADV 9S2N ALA S 263 UNP P04049 VAL 263 ENGINEERED MUTATION SEQRES 1 B 236 GLY ALA MET GLY SER MET GLU ARG ALA SER LEU ILE GLN SEQRES 2 B 236 LYS ALA LYS LEU ALA GLU GLN ALA GLU ARG TYR GLU ASP SEQRES 3 B 236 MET ALA ALA PHE MET LYS GLY ALA VAL GLU LYS GLY GLU SEQRES 4 B 236 GLU LEU SER CYS GLU GLU ARG ASN LEU LEU SER VAL ALA SEQRES 5 B 236 TYR LYS ASN VAL VAL GLY GLY GLN ARG ALA ALA TRP ARG SEQRES 6 B 236 VAL LEU SER SER ILE GLU GLN LYS SER ASN GLU GLU GLY SEQRES 7 B 236 SER GLU GLU LYS GLY PRO GLU VAL ARG GLU TYR ARG GLU SEQRES 8 B 236 LYS VAL GLU THR GLU LEU GLN GLY VAL CYS ASP THR VAL SEQRES 9 B 236 LEU GLY LEU LEU ASP SER HIS LEU ILE LYS GLU ALA GLY SEQRES 10 B 236 ASP ALA GLU SER ARG VAL PHE TYR LEU LYS MET LYS GLY SEQRES 11 B 236 ASP TYR TYR ARG TYR LEU ALA GLU VAL ALA THR GLY ASP SEQRES 12 B 236 ASP LYS LYS ARG ILE ILE ASP SER ALA ARG SER ALA TYR SEQRES 13 B 236 GLN GLU ALA MET ASP ILE SER LYS LYS GLU MET PRO PRO SEQRES 14 B 236 THR ASN PRO ILE ARG LEU GLY LEU ALA LEU ASN PHE SER SEQRES 15 B 236 VAL PHE HIS TYR GLU ILE ALA ASN SER PRO GLU GLU ALA SEQRES 16 B 236 ILE SER LEU ALA LYS THR THR PHE ASP GLU ALA MET ALA SEQRES 17 B 236 ASP LEU HIS THR LEU SER GLU ASP SER TYR LYS ASP SER SEQRES 18 B 236 THR LEU ILE MET GLN LEU LEU ARG ASP ASN LEU THR LEU SEQRES 19 B 236 TRP THR SEQRES 1 H 10 GLN ARG SER THR SEP THR PRO ASN ALA HIS SEQRES 1 K 236 GLY ALA MET GLY SER MET GLU ARG ALA SER LEU ILE GLN SEQRES 2 K 236 LYS ALA LYS LEU ALA GLU GLN ALA GLU ARG TYR GLU ASP SEQRES 3 K 236 MET ALA ALA PHE MET LYS GLY ALA VAL GLU LYS GLY GLU SEQRES 4 K 236 GLU LEU SER CYS GLU GLU ARG ASN LEU LEU SER VAL ALA SEQRES 5 K 236 TYR LYS ASN VAL VAL GLY GLY GLN ARG ALA ALA TRP ARG SEQRES 6 K 236 VAL LEU SER SER ILE GLU GLN LYS SER ASN GLU GLU GLY SEQRES 7 K 236 SER GLU GLU LYS GLY PRO GLU VAL ARG GLU TYR ARG GLU SEQRES 8 K 236 LYS VAL GLU THR GLU LEU GLN GLY VAL CYS ASP THR VAL SEQRES 9 K 236 LEU GLY LEU LEU ASP SER HIS LEU ILE LYS GLU ALA GLY SEQRES 10 K 236 ASP ALA GLU SER ARG VAL PHE TYR LEU LYS MET LYS GLY SEQRES 11 K 236 ASP TYR TYR ARG TYR LEU ALA GLU VAL ALA THR GLY ASP SEQRES 12 K 236 ASP LYS LYS ARG ILE ILE ASP SER ALA ARG SER ALA TYR SEQRES 13 K 236 GLN GLU ALA MET ASP ILE SER LYS LYS GLU MET PRO PRO SEQRES 14 K 236 THR ASN PRO ILE ARG LEU GLY LEU ALA LEU ASN PHE SER SEQRES 15 K 236 VAL PHE HIS TYR GLU ILE ALA ASN SER PRO GLU GLU ALA SEQRES 16 K 236 ILE SER LEU ALA LYS THR THR PHE ASP GLU ALA MET ALA SEQRES 17 K 236 ASP LEU HIS THR LEU SER GLU ASP SER TYR LYS ASP SER SEQRES 18 K 236 THR LEU ILE MET GLN LEU LEU ARG ASP ASN LEU THR LEU SEQRES 19 K 236 TRP THR SEQRES 1 S 10 GLN ARG SER THR SEP THR PRO ASN ALA HIS MODRES 9S2N SEP H 259 SER MODIFIED RESIDUE MODRES 9S2N SEP S 259 SER MODIFIED RESIDUE HET SEP H 259 10 HET SEP S 259 10 HET WQI B 301 21 HET MG B 302 1 HET MG B 303 1 HET MG B 304 1 HET CL B 305 1 HET WQI K 301 21 HET CL K 302 1 HET MG K 303 1 HET MG K 304 1 HET MG K 305 1 HETNAM SEP PHOSPHOSERINE HETNAM WQI 2-CHLORANYL-~{N}-[[1-(4-IODOPHENYL)SULFONYLPIPERIDIN-4- HETNAM 2 WQI YL]METHYL]ETHANAMIDE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETSYN SEP PHOSPHONOSERINE FORMUL 2 SEP 2(C3 H8 N O6 P) FORMUL 5 WQI 2(C14 H18 CL I N2 O3 S) FORMUL 6 MG 6(MG 2+) FORMUL 9 CL 2(CL 1-) FORMUL 15 HOH *295(H2 O) HELIX 1 AA1 GLU B 2 ALA B 16 1 15 HELIX 2 AA2 ARG B 18 GLU B 31 1 14 HELIX 3 AA3 SER B 37 GLU B 71 1 35 HELIX 4 AA4 PRO B 79 HIS B 106 1 28 HELIX 5 AA5 HIS B 106 ALA B 111 1 6 HELIX 6 AA6 ASP B 113 ALA B 135 1 23 HELIX 7 AA7 THR B 136 MET B 162 1 27 HELIX 8 AA8 ASN B 166 ILE B 183 1 18 HELIX 9 AA9 SER B 186 LEU B 205 1 20 HELIX 10 AB1 HIS B 206 LEU B 208 5 3 HELIX 11 AB2 SER B 209 THR B 231 1 23 HELIX 12 AB3 ALA K -3 MET K 1 5 5 HELIX 13 AB4 GLU K 2 ALA K 16 1 15 HELIX 14 AB5 ARG K 18 GLU K 31 1 14 HELIX 15 AB6 SER K 37 GLU K 72 1 36 HELIX 16 AB7 GLY K 78 HIS K 106 1 29 HELIX 17 AB8 HIS K 106 ALA K 111 1 6 HELIX 18 AB9 ASP K 113 ALA K 135 1 23 HELIX 19 AC1 THR K 136 MET K 162 1 27 HELIX 20 AC2 ASN K 166 ILE K 183 1 18 HELIX 21 AC3 SER K 186 LEU K 205 1 20 HELIX 22 AC4 HIS K 206 LEU K 208 5 3 HELIX 23 AC5 SER K 209 THR K 231 1 23 LINK SG CYS B 38 C2 WQI B 301 1555 1555 1.75 LINK C THR H 258 N SEP H 259 1555 1555 1.34 LINK C SEP H 259 N THR H 260 1555 1555 1.33 LINK SG CYS K 38 C2 WQI K 301 1555 1555 1.79 LINK C THR S 258 N SEP S 259 1555 1555 1.34 LINK C SEP S 259 N THR S 260 1555 1555 1.34 LINK OE1 GLU B 86 MG MG B 302 1555 1555 2.64 LINK OE2 GLU B 86 MG MG B 302 1555 1555 2.60 LINK OE2 GLU B 89 MG MG B 302 1555 1555 2.44 LINK O THR B 228 MG MG B 304 1555 1555 2.27 LINK OXT THR B 231 MG MG B 304 1555 1555 2.44 LINK MG MG B 302 O HOH B 407 1555 1555 1.96 LINK MG MG B 302 O HOH B 466 1555 1555 2.16 LINK MG MG B 302 O HOH B 548 1555 1555 2.36 LINK MG MG B 303 O HOH B 582 1555 1555 2.95 LINK MG MG B 303 OD1 ASP K 113 1655 1555 2.91 LINK MG MG B 304 O HOH B 501 1555 1555 2.26 LINK OE1 GLU K 2 MG MG K 304 1555 2545 2.85 LINK OE1 GLU K 86 MG MG K 303 1555 1555 2.85 LINK OE2 GLU K 86 MG MG K 303 1555 1555 2.19 LINK OE2 GLU K 89 MG MG K 303 1555 1555 2.56 LINK MG MG K 303 O HOH K 425 1555 1555 2.17 CRYST1 61.026 89.368 117.851 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016386 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011190 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008485 0.00000 CONECT 321 3878 CONECT 707 3882 CONECT 708 3882 CONECT 733 3882 CONECT 1824 3884 CONECT 1857 3884 CONECT 1887 1892 CONECT 1892 1887 1893 CONECT 1893 1892 1894 1896 CONECT 1894 1893 1895 CONECT 1895 1894 1898 CONECT 1896 1893 1897 1902 CONECT 1897 1896 CONECT 1898 1895 1899 1900 1901 CONECT 1899 1898 CONECT 1900 1898 CONECT 1901 1898 CONECT 1902 1896 CONECT 2250 3903 CONECT 2636 3908 CONECT 2637 3908 CONECT 2662 3908 CONECT 3807 3812 CONECT 3812 3807 3813 CONECT 3813 3812 3814 3816 CONECT 3814 3813 3815 CONECT 3815 3814 3818 CONECT 3816 3813 3817 3822 CONECT 3817 3816 CONECT 3818 3815 3819 3820 3821 CONECT 3819 3818 CONECT 3820 3818 CONECT 3821 3818 CONECT 3822 3816 CONECT 3861 3862 3863 3874 CONECT 3862 3861 3871 CONECT 3863 3861 3864 CONECT 3864 3863 3873 CONECT 3865 3869 3870 CONECT 3866 3867 3870 3877 CONECT 3867 3866 3868 CONECT 3868 3867 3869 CONECT 3869 3865 3868 3881 CONECT 3870 3865 3866 CONECT 3871 3862 3873 CONECT 3872 3874 3875 CONECT 3873 3864 3871 3877 CONECT 3874 3861 3872 CONECT 3875 3872 3876 3878 CONECT 3876 3875 CONECT 3877 3866 3873 3879 3880 CONECT 3878 321 3875 CONECT 3879 3877 CONECT 3880 3877 CONECT 3881 3869 CONECT 3882 707 708 733 3917 CONECT 3882 3976 4058 CONECT 3883 4092 CONECT 3884 1824 1857 4011 CONECT 3886 3887 3888 3899 CONECT 3887 3886 3896 CONECT 3888 3886 3889 CONECT 3889 3888 3898 CONECT 3890 3894 3895 CONECT 3891 3892 3895 3902 CONECT 3892 3891 3893 CONECT 3893 3892 3894 CONECT 3894 3890 3893 3906 CONECT 3895 3890 3891 CONECT 3896 3887 3898 CONECT 3897 3899 3900 CONECT 3898 3889 3896 3902 CONECT 3899 3886 3897 CONECT 3900 3897 3901 3903 CONECT 3901 3900 CONECT 3902 3891 3898 3904 3905 CONECT 3903 2250 3900 CONECT 3904 3902 CONECT 3905 3902 CONECT 3906 3894 CONECT 3908 2636 2637 2662 4131 CONECT 3917 3882 CONECT 3976 3882 CONECT 4011 3884 CONECT 4058 3882 CONECT 4092 3883 CONECT 4131 3908 MASTER 409 0 12 23 0 0 0 6 4201 4 87 40 END