HEADER TRANSFERASE 22-JUL-25 9S2T TITLE CARBAMOYL TRANSFERASE NOVN INVOLVED IN NOVOBIOCIN BIOSYNTHESIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DECARBAMOYLNOVOBIOCIN CARBAMOYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NOVOBIOCIN BIOSYNTHESIS PROTEIN N; COMPND 5 EC: 2.1.3.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES NIVEUS; SOURCE 3 ORGANISM_TAXID: 193462; SOURCE 4 GENE: NOVN; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CARBAMOYLATION, TRANSFERASE, HOMODIMER, NOVOBIOCIN EXPDTA X-RAY DIFFRACTION AUTHOR I.GOMEZ GARCIA,D.M.LAWSON REVDAT 1 30-JUL-25 9S2T 0 JRNL AUTH I.GOMEZ GARCIA,D.M.LAWSON JRNL TITL CARBAMOYL TRANSFERASE NOVN INVOLVED IN NOVOBIOCIN JRNL TITL 2 BIOSYNTHESIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.GOMEZ GARCIA,C.L.FREEL MEYERS,C.T.WALSH,D.M.LAWSON REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF THE REMARK 1 TITL 2 O-CARBAMOYLTRANSFERASE NOVN FROM THE NOVOBIOCIN-BIOSYNTHETIC REMARK 1 TITL 3 CLUSTER OF STREPTOMYCES SPHEROIDES. REMARK 1 REF ACTA CRYSTALLOGR SECT F V. 64 1000 2008 REMARK 1 REF 2 STRUCT BIOL CRYST COMMUN REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 18997325 REMARK 1 DOI 10.1107/S1744309108030145 REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 (REFMACAT 0.4.105) REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 46699 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.062 REMARK 3 FREE R VALUE TEST SET COUNT : 2364 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.24 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.30 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2321 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 132 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5194 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 434 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.58300 REMARK 3 B22 (A**2) : 2.05500 REMARK 3 B33 (A**2) : -0.47200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.193 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.489 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5434 ; 0.006 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7417 ; 1.511 ; 1.830 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 690 ; 6.757 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 60 ; 6.331 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 848 ;12.044 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 830 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4202 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2458 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3662 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 409 ; 0.124 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2697 ; 1.850 ; 2.480 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3375 ; 3.008 ; 4.455 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2737 ; 2.605 ; 2.713 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4031 ; 4.070 ; 4.879 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Ap 1 Ap 669 REMARK 3 ORIGIN FOR THE GROUP (A): 5.2537 23.4780 33.5549 REMARK 3 T TENSOR REMARK 3 T11: 0.0480 T22: 0.0288 REMARK 3 T33: 0.0131 T12: 0.0045 REMARK 3 T13: -0.0130 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.6177 L22: 0.5216 REMARK 3 L33: 0.8138 L12: 0.1171 REMARK 3 L13: -0.0670 L23: -0.0251 REMARK 3 S TENSOR REMARK 3 S11: 0.0035 S12: -0.1117 S13: -0.0354 REMARK 3 S21: 0.1425 S22: -0.0233 S23: -0.0358 REMARK 3 S31: 0.0548 S32: 0.0157 S33: 0.0198 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE NOT BEEN USED REMARK 4 REMARK 4 9S2T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1292149594. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9507 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.8.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46701 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 REMARK 200 RESOLUTION RANGE LOW (A) : 46.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 8.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 46.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.03300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 33.30 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL, PH 9.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 54.25000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.63000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 83.35500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 54.25000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.63000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 83.35500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 54.25000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.63000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 83.35500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 54.25000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.63000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 83.35500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 670 REMARK 465 ASP A 671 REMARK 465 GLY A 672 REMARK 465 ALA A 673 REMARK 465 GLY A 674 REMARK 465 SER A 675 REMARK 465 ALA A 676 REMARK 465 PRO A 677 REMARK 465 LEU A 678 REMARK 465 GLU A 679 REMARK 465 HIS A 680 REMARK 465 HIS A 681 REMARK 465 HIS A 682 REMARK 465 HIS A 683 REMARK 465 HIS A 684 REMARK 465 HIS A 685 REMARK 465 HIS A 686 REMARK 465 HIS A 687 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 444 CD CE NZ REMARK 470 ARG A 601 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 106 CB - CA - C ANGL. DEV. = 14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 26 59.56 81.40 REMARK 500 ARG A 161 -37.39 -133.42 REMARK 500 ASN A 439 -87.73 -64.89 REMARK 500 LYS A 444 79.63 74.10 REMARK 500 ASN A 510 82.85 -152.45 REMARK 500 GLU A 563 -118.20 56.05 REMARK 500 VAL A 637 -42.20 -140.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 259 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 706 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 133 NE2 REMARK 620 2 HIS A 137 NE2 86.8 REMARK 620 3 ASP A 156 OD1 96.6 107.8 REMARK 620 4 ASP A 333 OD1 95.9 100.5 149.5 REMARK 620 5 HOH A 842 O 83.0 169.5 71.0 83.1 REMARK 620 6 HOH A1083 O 174.9 98.3 82.5 82.5 91.9 REMARK 620 N 1 2 3 4 5 DBREF 9S2T A 1 677 UNP Q9L9F4 NOVN_STRNV 1 677 SEQADV 9S2T LEU A 678 UNP Q9L9F4 EXPRESSION TAG SEQADV 9S2T GLU A 679 UNP Q9L9F4 EXPRESSION TAG SEQADV 9S2T HIS A 680 UNP Q9L9F4 EXPRESSION TAG SEQADV 9S2T HIS A 681 UNP Q9L9F4 EXPRESSION TAG SEQADV 9S2T HIS A 682 UNP Q9L9F4 EXPRESSION TAG SEQADV 9S2T HIS A 683 UNP Q9L9F4 EXPRESSION TAG SEQADV 9S2T HIS A 684 UNP Q9L9F4 EXPRESSION TAG SEQADV 9S2T HIS A 685 UNP Q9L9F4 EXPRESSION TAG SEQADV 9S2T HIS A 686 UNP Q9L9F4 EXPRESSION TAG SEQADV 9S2T HIS A 687 UNP Q9L9F4 EXPRESSION TAG SEQRES 1 A 687 MET LEU ILE LEU GLY LEU ASN GLY ASN VAL SER ALA ALA SEQRES 2 A 687 GLY ALA ASP VAL VAL PRO ASN LEU ASN GLU LEU TYR MET SEQRES 3 A 687 HIS ASP ALA ALA ALA THR LEU VAL ARG ASP GLY VAL LEU SEQRES 4 A 687 VAL ALA ALA VAL GLU GLU GLU ARG LEU ASN ARG ILE LYS SEQRES 5 A 687 LYS THR THR LYS PHE PRO SER ASN ALA ILE ARG GLU CYS SEQRES 6 A 687 LEU ALA ALA ALA GLY ALA LYS PRO ALA ASP VAL ASP ALA SEQRES 7 A 687 ILE ALA TYR TYR PHE PRO GLU ASP PHE PHE ASP ASP ILE SEQRES 8 A 687 PHE GLN GLN LEU TYR THR GLU HIS PRO SER VAL PRO THR SEQRES 9 A 687 ARG TYR SER ARG GLU MET ILE LEU GLU ARG LEU ARG VAL SEQRES 10 A 687 ASP LEU GLY TRP ALA ALA PRO PRO ASP ILE LEU HIS TYR SEQRES 11 A 687 VAL PRO HIS HIS LEU ALA HIS ALA MET SER THR TYR TYR SEQRES 12 A 687 ARG SER GLY MET ARG GLU ALA LEU VAL VAL VAL MET ASP SEQRES 13 A 687 GLY ALA GLY GLU ARG ASN CYS THR THR ILE TYR ARG SER SEQRES 14 A 687 ASP GLY ALA GLU LEU PHE GLU ILE ALA SER TYR PRO VAL SEQRES 15 A 687 PRO LYS SER LEU GLY MET PHE TYR LEU TYR GLY THR ARG SEQRES 16 A 687 HIS LEU GLY TYR GLY PHE GLY ASP GLU TYR LYS VAL MET SEQRES 17 A 687 GLY LEU ALA PRO TYR GLY ASP PRO SER THR TYR ARG ASP SEQRES 18 A 687 VAL PHE SER THR LEU TYR SER LEU GLY PRO ASN GLY THR SEQRES 19 A 687 TYR GLU LEU ILE PRO ARG GLY GLY VAL VAL PHE ARG MET SEQRES 20 A 687 THR THR ILE LEU ARG GLU HIS GLY LEU GLN PRO ARG ARG SEQRES 21 A 687 ARG GLY GLU PRO PHE THR GLN ALA HIS MET ASP PHE ALA SEQRES 22 A 687 ALA SER VAL GLN GLU THR THR GLU GLN ILE ALA MET HIS SEQRES 23 A 687 VAL ILE GLY TYR TRP ALA ARG SER THR GLY LEU ARG ASN SEQRES 24 A 687 LEU ALA PHE GLY GLY GLY VAL ALA HIS ASN SER THR LEU SEQRES 25 A 687 ASN GLY ARG ILE LEU THR SER GLY LEU PHE ASP GLU VAL SEQRES 26 A 687 PHE VAL HIS PRO ALA SER HIS ASP ALA GLY SER SER GLU SEQRES 27 A 687 GLY ALA ALA LEU VAL VAL ALA ARG GLU ARG GLY GLU ARG SEQRES 28 A 687 VAL TRP PRO LEU PRO ARG LEU THR ASN ALA SER LEU GLY SEQRES 29 A 687 PRO ASP LEU GLY ASP VAL ASP SER LEU GLU ARG THR LEU SEQRES 30 A 687 LYS SER TRP SER PRO LEU VAL ASP VAL GLU ARG PRO ASP SEQRES 31 A 687 ASP ILE VAL GLU ALA THR ALA HIS LEU LEU ALA ALA GLY SEQRES 32 A 687 GLU ALA ILE GLY TRP ALA HIS GLY ARG SER GLU PHE GLY SEQRES 33 A 687 PRO ARG ALA LEU GLY ASN ARG SER ILE LEU ALA ASP ALA SEQRES 34 A 687 ARG PRO LYS GLU ASN GLN THR ARG ILE ASN ALA MET VAL SEQRES 35 A 687 LYS LYS ARG GLU SER PHE ARG PRO PHE ALA PRO VAL VAL SEQRES 36 A 687 THR ALA GLU ALA ALA GLY ASP TYR PHE ASP LEU PRO GLU SEQRES 37 A 687 THR VAL GLY HIS HIS ASP PHE MET SER PHE VAL VAL GLN SEQRES 38 A 687 VAL ARG ALA ASP ARG ARG GLU LEU LEU GLY ALA VAL THR SEQRES 39 A 687 HIS VAL ASP GLY SER ALA ARG VAL GLN VAL VAL THR GLU SEQRES 40 A 687 GLU THR ASN PRO ARG PHE HIS ARG LEU VAL THR ARG PHE SEQRES 41 A 687 GLY GLU LEU THR GLY THR PRO VAL LEU LEU ASN THR SER SEQRES 42 A 687 PHE ASN ASN HIS ALA GLU PRO ILE VAL GLN SER VAL ASP SEQRES 43 A 687 ASP VAL LEU THR SER TYR LEU THR THR SER LEU ASP VAL SEQRES 44 A 687 LEU VAL ILE GLU ASP PHE VAL VAL ARG ARG ARG THR GLU SEQRES 45 A 687 LEU PRO LEU ALA LEU GLU ASP PHE THR ILE GLY PHE ARG SEQRES 46 A 687 PRO VAL THR ARG LEU VAL ARG ARG LEU ALA ASP VAL SER SEQRES 47 A 687 ALA GLY ARG PRO GLY ALA PRO GLU VAL SER HIS GLU ILE SEQRES 48 A 687 TYR LEU ASP HIS THR SER GLY PRO ARG ALA THR ILE SER SEQRES 49 A 687 ALA ALA MET TYR GLU LEU LEU THR HIS ALA ASP GLY VAL SEQRES 50 A 687 THR PRO LEU GLY SER LEU GLY ILE GLU LEU THR GLY GLU SEQRES 51 A 687 LEU LEU THR GLU LEU TYR ASP LEU TRP GLN GLY ARG PHE SEQRES 52 A 687 VAL THR VAL ALA PRO VAL GLY ASP GLY ALA GLY SER ALA SEQRES 53 A 687 PRO LEU GLU HIS HIS HIS HIS HIS HIS HIS HIS HET PO4 A 701 5 HET PO4 A 702 5 HET PO4 A 703 5 HET PO4 A 704 5 HET PO4 A 705 5 HET FE A 706 1 HET PO4 A 707 5 HETNAM PO4 PHOSPHATE ION HETNAM FE FE (III) ION FORMUL 2 PO4 6(O4 P 3-) FORMUL 7 FE FE 3+ FORMUL 9 HOH *434(H2 O) HELIX 1 AA1 GLU A 45 ARG A 50 1 6 HELIX 2 AA2 PRO A 58 ALA A 69 1 12 HELIX 3 AA3 LYS A 72 VAL A 76 5 5 HELIX 4 AA4 PRO A 84 HIS A 99 1 16 HELIX 5 AA5 TYR A 106 GLY A 120 1 15 HELIX 6 AA6 PRO A 124 ASP A 126 5 3 HELIX 7 AA7 PRO A 132 GLY A 146 1 15 HELIX 8 AA8 SER A 185 LEU A 197 1 13 HELIX 9 AA9 ASP A 203 ALA A 211 1 9 HELIX 10 AB1 PRO A 212 GLY A 214 5 3 HELIX 11 AB2 TYR A 219 SER A 224 1 6 HELIX 12 AB3 PRO A 231 GLY A 233 5 3 HELIX 13 AB4 PHE A 245 HIS A 254 1 10 HELIX 14 AB5 THR A 266 GLY A 296 1 31 HELIX 15 AB6 GLY A 304 HIS A 308 5 5 HELIX 16 AB7 ASN A 309 SER A 319 1 11 HELIX 17 AB8 HIS A 332 ARG A 348 1 17 HELIX 18 AB9 ASP A 369 TRP A 380 1 12 HELIX 19 AC1 ASP A 391 ALA A 402 1 12 HELIX 20 AC2 GLU A 433 MET A 441 1 9 HELIX 21 AC3 ALA A 459 TYR A 463 1 5 HELIX 22 AC4 ALA A 484 ARG A 487 5 4 HELIX 23 AC5 ASN A 510 GLY A 525 1 16 HELIX 24 AC6 SER A 544 THR A 555 1 12 HELIX 25 AC7 SER A 624 THR A 632 1 9 HELIX 26 AC8 PRO A 639 LEU A 643 5 5 HELIX 27 AC9 THR A 648 ARG A 662 1 15 SHEET 1 AA1 5 VAL A 38 GLU A 44 0 SHEET 2 AA1 5 ALA A 30 ARG A 35 -1 N ARG A 35 O VAL A 38 SHEET 3 AA1 5 LEU A 2 ASN A 7 -1 N ILE A 3 O VAL A 34 SHEET 4 AA1 5 ALA A 78 TYR A 81 1 O ALA A 80 N LEU A 4 SHEET 5 AA1 5 LEU A 128 TYR A 130 1 O HIS A 129 N ILE A 79 SHEET 1 AA2 6 GLU A 173 PRO A 181 0 SHEET 2 AA2 6 ASN A 162 ASP A 170 -1 N ASP A 170 O GLU A 173 SHEET 3 AA2 6 LEU A 151 MET A 155 -1 N VAL A 152 O TYR A 167 SHEET 4 AA2 6 ASN A 299 GLY A 303 1 O ASN A 299 N LEU A 151 SHEET 5 AA2 6 GLU A 324 VAL A 327 1 O PHE A 326 N LEU A 300 SHEET 6 AA2 6 VAL A 470 GLY A 471 1 O VAL A 470 N VAL A 325 SHEET 1 AA3 2 TYR A 227 LEU A 229 0 SHEET 2 AA3 2 TYR A 235 LEU A 237 -1 O GLU A 236 N SER A 228 SHEET 1 AA4 8 VAL A 384 GLU A 387 0 SHEET 2 AA4 8 PHE A 565 ARG A 569 -1 O ARG A 568 N ASP A 385 SHEET 3 AA4 8 VAL A 559 ILE A 562 -1 N LEU A 560 O VAL A 567 SHEET 4 AA4 8 ILE A 406 ALA A 409 1 N GLY A 407 O VAL A 561 SHEET 5 AA4 8 ARG A 423 ASP A 428 -1 O LEU A 426 N ILE A 406 SHEET 6 AA4 8 VAL A 528 SER A 533 -1 O LEU A 530 N ALA A 427 SHEET 7 AA4 8 PRO A 453 THR A 456 -1 N VAL A 454 O LEU A 529 SHEET 8 AA4 8 GLN A 503 VAL A 505 1 O VAL A 505 N VAL A 455 SHEET 1 AA5 3 PHE A 464 ASP A 465 0 SHEET 2 AA5 3 VAL A 479 VAL A 482 -1 O GLN A 481 N ASP A 465 SHEET 3 AA5 3 SER A 499 ARG A 501 -1 O ALA A 500 N VAL A 480 SHEET 1 AA6 2 PHE A 580 GLY A 583 0 SHEET 2 AA6 2 THR A 665 PRO A 668 -1 O ALA A 667 N THR A 581 SHEET 1 AA7 3 THR A 588 ALA A 595 0 SHEET 2 AA7 3 GLU A 606 LEU A 613 -1 O SER A 608 N ARG A 593 SHEET 3 AA7 3 ARG A 620 THR A 622 -1 O ALA A 621 N ILE A 611 LINK NE2 HIS A 133 FE FE A 706 1555 1555 2.25 LINK NE2 HIS A 137 FE FE A 706 1555 1555 2.33 LINK OD1 ASP A 156 FE FE A 706 1555 1555 2.29 LINK OD1 ASP A 333 FE FE A 706 1555 1555 1.97 LINK FE FE A 706 O HOH A 842 1555 1555 2.19 LINK FE FE A 706 O HOH A1083 1555 1555 2.47 CISPEP 1 TRP A 353 PRO A 354 0 -5.13 CRYST1 108.500 113.260 166.710 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009217 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008829 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005998 0.00000 CONECT 1064 5302 CONECT 1097 5302 CONECT 1253 5302 CONECT 2649 5302 CONECT 5277 5278 5279 5280 5281 CONECT 5278 5277 CONECT 5279 5277 CONECT 5280 5277 CONECT 5281 5277 CONECT 5282 5283 5284 5285 5286 CONECT 5283 5282 CONECT 5284 5282 CONECT 5285 5282 CONECT 5286 5282 CONECT 5287 5288 5289 5290 5291 CONECT 5288 5287 CONECT 5289 5287 CONECT 5290 5287 CONECT 5291 5287 CONECT 5292 5293 5294 5295 5296 CONECT 5293 5292 CONECT 5294 5292 CONECT 5295 5292 CONECT 5296 5292 CONECT 5297 5298 5299 5300 5301 CONECT 5298 5297 CONECT 5299 5297 CONECT 5300 5297 CONECT 5301 5297 CONECT 5302 1064 1097 1253 2649 CONECT 5302 5349 5594 CONECT 5303 5304 5305 5306 5307 CONECT 5304 5303 CONECT 5305 5303 CONECT 5306 5303 CONECT 5307 5303 CONECT 5349 5302 CONECT 5594 5302 MASTER 387 0 7 27 29 0 0 6 5659 1 38 53 END