HEADER SIGNALING PROTEIN 24-JUL-25 9S3I TITLE CRYSTAL STRUCTURE OF THE HUMAN TUMOR NECROSIS FACTOR RECEPTOR 1 TITLE 2 EXTRACELLULAR DOMAIN AT 1.64A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 1A, COMPND 3 MEMBRANE FORM; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: HISTAG CLEAVED WITH TEV PROTEASE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TNFRSF1A, TNFAR, TNFR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SHUFFLE T7 KEYWDS TRANSMEMBRANE SIGNALING RECEPTOR, EXTRACELLULAR DOMAIN, CYTOKINE- KEYWDS 2 MEDIATED ACTIVITY, IMMUNE REGULATION, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.POVLSEN,A.BACH,M.GAJHEDE,D.NARAYANAN REVDAT 1 01-JUL-26 9S3I 0 JRNL AUTH H.CHEDOTAL,K.POVLSEN,D.NARAYANAN,C.GOTFREDSEN,M.GAJHEDE, JRNL AUTH 2 A.BACH,M.CLAUSEN JRNL TITL DISCOVERY OF LIGANDS FOR THE TNFR1 EXTRACELLULAR DOMAIN JRNL TITL 2 USING FRAGMENT-BASED DRUG DISCOVERY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX V1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.230 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 56115 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 2791 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.7200 - 4.4500 1.00 2911 160 0.2373 0.2799 REMARK 3 2 4.4500 - 3.5300 1.00 2793 124 0.1698 0.1968 REMARK 3 3 3.5300 - 3.0900 1.00 2712 144 0.1886 0.2204 REMARK 3 4 3.0900 - 2.8000 1.00 2681 164 0.1904 0.2063 REMARK 3 5 2.8000 - 2.6000 1.00 2688 144 0.1965 0.2172 REMARK 3 6 2.6000 - 2.4500 1.00 2650 151 0.1928 0.2407 REMARK 3 7 2.4500 - 2.3300 1.00 2681 124 0.1838 0.2330 REMARK 3 8 2.3300 - 2.2300 1.00 2658 132 0.1764 0.2004 REMARK 3 9 2.2300 - 2.1400 1.00 2662 137 0.1704 0.1818 REMARK 3 10 2.1400 - 2.0700 1.00 2635 150 0.1918 0.2353 REMARK 3 11 2.0700 - 2.0000 1.00 2667 124 0.2115 0.2297 REMARK 3 12 2.0000 - 1.9400 1.00 2617 149 0.2086 0.2264 REMARK 3 13 1.9400 - 1.8900 1.00 2650 128 0.2241 0.2777 REMARK 3 14 1.8900 - 1.8500 1.00 2587 165 0.2424 0.2726 REMARK 3 15 1.8500 - 1.8100 1.00 2631 132 0.2667 0.3458 REMARK 3 16 1.8000 - 1.7700 1.00 2646 113 0.2964 0.3287 REMARK 3 17 1.7700 - 1.7300 1.00 2606 143 0.3194 0.3466 REMARK 3 18 1.7300 - 1.7000 1.00 2630 132 0.3337 0.3913 REMARK 3 19 1.7000 - 1.6700 1.00 2626 134 0.3552 0.3976 REMARK 3 20 1.6700 - 1.6400 1.00 2593 141 0.3725 0.3601 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2160 REMARK 3 ANGLE : 1.129 2919 REMARK 3 CHIRALITY : 0.056 303 REMARK 3 PLANARITY : 0.010 385 REMARK 3 DIHEDRAL : 6.562 291 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.2690 19.8292 -32.8808 REMARK 3 T TENSOR REMARK 3 T11: 0.2396 T22: 0.3307 REMARK 3 T33: 0.3167 T12: -0.0201 REMARK 3 T13: -0.0196 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.8182 L22: 0.2153 REMARK 3 L33: 0.3673 L12: 0.2422 REMARK 3 L13: -0.3585 L23: 0.0258 REMARK 3 S TENSOR REMARK 3 S11: 0.0128 S12: -0.0054 S13: -0.0142 REMARK 3 S21: -0.0449 S22: 0.0987 S23: -0.0669 REMARK 3 S31: -0.0382 S32: 0.0520 S33: 0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.1431 22.5255 -6.0039 REMARK 3 T TENSOR REMARK 3 T11: 0.3033 T22: 0.6891 REMARK 3 T33: 0.3016 T12: 0.0244 REMARK 3 T13: -0.0086 T23: -0.0456 REMARK 3 L TENSOR REMARK 3 L11: 0.1124 L22: 0.3657 REMARK 3 L33: 0.0266 L12: -0.2447 REMARK 3 L13: -0.0430 L23: 0.0521 REMARK 3 S TENSOR REMARK 3 S11: -0.1345 S12: -0.4611 S13: 0.2275 REMARK 3 S21: 0.1317 S22: 0.0706 S23: 0.0568 REMARK 3 S31: -0.3147 S32: 0.3707 S33: -0.0003 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.5203 11.7812 9.0548 REMARK 3 T TENSOR REMARK 3 T11: 0.4095 T22: 0.8617 REMARK 3 T33: 0.3755 T12: 0.2431 REMARK 3 T13: 0.0203 T23: 0.0409 REMARK 3 L TENSOR REMARK 3 L11: 0.3797 L22: 1.1417 REMARK 3 L33: 0.1816 L12: 0.5980 REMARK 3 L13: 0.1522 L23: 0.0449 REMARK 3 S TENSOR REMARK 3 S11: -0.3156 S12: -0.3281 S13: -0.2186 REMARK 3 S21: 0.0467 S22: 0.1720 S23: -0.2113 REMARK 3 S31: 0.1120 S32: 0.2718 S33: -0.0453 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 14 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8238 14.8187 -25.7853 REMARK 3 T TENSOR REMARK 3 T11: 0.2346 T22: 0.3202 REMARK 3 T33: 0.3118 T12: -0.0389 REMARK 3 T13: -0.0084 T23: 0.0314 REMARK 3 L TENSOR REMARK 3 L11: 0.8734 L22: 0.3304 REMARK 3 L33: 0.5046 L12: -0.5796 REMARK 3 L13: 0.6394 L23: -0.0548 REMARK 3 S TENSOR REMARK 3 S11: 0.0350 S12: -0.0136 S13: 0.0008 REMARK 3 S21: -0.0205 S22: -0.0184 S23: 0.0411 REMARK 3 S31: 0.0481 S32: 0.1420 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 102 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5227 1.8788 5.0683 REMARK 3 T TENSOR REMARK 3 T11: 0.4540 T22: 0.6352 REMARK 3 T33: 0.4182 T12: 0.1750 REMARK 3 T13: 0.0619 T23: 0.1311 REMARK 3 L TENSOR REMARK 3 L11: 0.1469 L22: 0.7508 REMARK 3 L33: 0.3317 L12: 0.0559 REMARK 3 L13: -0.0527 L23: 0.3186 REMARK 3 S TENSOR REMARK 3 S11: -0.3660 S12: -0.6178 S13: 0.3263 REMARK 3 S21: 0.3224 S22: 0.5674 S23: 0.1475 REMARK 3 S31: -0.1476 S32: -0.3021 S33: 0.0111 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 140 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9434 0.3684 21.4719 REMARK 3 T TENSOR REMARK 3 T11: 1.5053 T22: 2.0182 REMARK 3 T33: 0.9211 T12: 0.4942 REMARK 3 T13: 0.1769 T23: 0.6183 REMARK 3 L TENSOR REMARK 3 L11: 0.1547 L22: 0.5436 REMARK 3 L33: 0.2541 L12: -0.1261 REMARK 3 L13: -0.1459 L23: 0.3512 REMARK 3 S TENSOR REMARK 3 S11: 0.0794 S12: 0.2415 S13: -0.2610 REMARK 3 S21: 0.0003 S22: 0.3791 S23: -0.1903 REMARK 3 S31: 0.0083 S32: 0.0263 S33: 0.0579 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9S3I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1292148905. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8-7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX IV REMARK 200 BEAMLINE : BIOMAX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.7293 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : KB MIRROR PAIR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE CDTE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS V1.20 REMARK 200 DATA SCALING SOFTWARE : AIMLESS V0.8.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56257 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 48.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 25.00 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 16.70 REMARK 200 R MERGE FOR SHELL (I) : 5.97200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER V2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZATION COCKTAIL: 0.1 M HEPES, REMARK 280 70% V/V 2-METHYL-2,4-PENTANEDIOL (PH 7.5) ADDITIVE COCKTAIL: 0.2% REMARK 280 W/V 1,4-DIAMINOBUTANE, 0.2% W/V 1,8-DIAMINOOCTANE, 0.2% W/V REMARK 280 CADAVERINE, 0.2% W/V CYSTAMINE DIHYDROCHLORIDE, 0.2% W/V REMARK 280 SPERMIDINE, 0.02 M HEPES SODIUM (PH 6.8) MIXED IN 3.5:1:1 REMARK 280 (PROTEIN/RESERVOIR/ADDITIVES), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.59300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.61050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.61050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.29650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.61050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.61050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 138.88950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.61050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.61050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 46.29650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.61050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.61050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 138.88950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 92.59300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 9 REMARK 465 PRO A 10 REMARK 465 ARG A 11 REMARK 465 ASP A 12 REMARK 465 HIS A 140 REMARK 465 ALA A 141 REMARK 465 GLY A 142 REMARK 465 PHE A 143 REMARK 465 PHE A 144 REMARK 465 LEU A 145 REMARK 465 ARG A 146 REMARK 465 GLU A 147 REMARK 465 ASN A 148 REMARK 465 GLU A 149 REMARK 465 CYS A 150 REMARK 465 VAL A 151 REMARK 465 SER A 152 REMARK 465 CYS A 153 REMARK 465 SER A 154 REMARK 465 ASN A 155 REMARK 465 CYS A 156 REMARK 465 LYS A 157 REMARK 465 LYS A 158 REMARK 465 SER A 159 REMARK 465 LEU A 160 REMARK 465 GLU A 161 REMARK 465 CYS A 162 REMARK 465 THR A 163 REMARK 465 LYS A 164 REMARK 465 LEU A 165 REMARK 465 CYS A 166 REMARK 465 LEU A 167 REMARK 465 PRO A 168 REMARK 465 GLN A 169 REMARK 465 ILE A 170 REMARK 465 GLU A 171 REMARK 465 ASN A 172 REMARK 465 GLY B 9 REMARK 465 PRO B 10 REMARK 465 ARG B 11 REMARK 465 ASP B 12 REMARK 465 SER B 13 REMARK 465 CYS B 153 REMARK 465 SER B 154 REMARK 465 ASN B 155 REMARK 465 CYS B 156 REMARK 465 LYS B 157 REMARK 465 LYS B 158 REMARK 465 SER B 159 REMARK 465 LEU B 160 REMARK 465 GLU B 161 REMARK 465 CYS B 162 REMARK 465 THR B 163 REMARK 465 LYS B 164 REMARK 465 LEU B 165 REMARK 465 CYS B 166 REMARK 465 LEU B 167 REMARK 465 PRO B 168 REMARK 465 GLN B 169 REMARK 465 ILE B 170 REMARK 465 GLU B 171 REMARK 465 ASN B 172 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 88 CB CYS A 88 SG -0.101 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 43 CA - CB - SG ANGL. DEV. = 7.3 DEGREES REMARK 500 ASP A 49 CB - CG - OD2 ANGL. DEV. = -8.4 DEGREES REMARK 500 ASP B 49 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP B 49 CB - CG - OD2 ANGL. DEV. = -8.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 120 78.29 -108.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 429 DISTANCE = 6.54 ANGSTROMS DBREF 9S3I A 11 172 UNP P19438 TNR1A_HUMAN 40 201 DBREF 9S3I B 11 172 UNP P19438 TNR1A_HUMAN 40 201 SEQADV 9S3I GLY A 9 UNP P19438 EXPRESSION TAG SEQADV 9S3I PRO A 10 UNP P19438 EXPRESSION TAG SEQADV 9S3I GLY B 9 UNP P19438 EXPRESSION TAG SEQADV 9S3I PRO B 10 UNP P19438 EXPRESSION TAG SEQRES 1 A 164 GLY PRO ARG ASP SER VAL CYS PRO GLN GLY LYS TYR ILE SEQRES 2 A 164 HIS PRO GLN ASN ASN SER ILE CYS CYS THR LYS CYS HIS SEQRES 3 A 164 LYS GLY THR TYR LEU TYR ASN ASP CYS PRO GLY PRO GLY SEQRES 4 A 164 GLN ASP THR ASP CYS ARG GLU CYS GLU SER GLY SER PHE SEQRES 5 A 164 THR ALA SER GLU ASN HIS LEU ARG HIS CYS LEU SER CYS SEQRES 6 A 164 SER LYS CYS ARG LYS GLU MET GLY GLN VAL GLU ILE SER SEQRES 7 A 164 SER CYS THR VAL ASP ARG ASP THR VAL CYS GLY CYS ARG SEQRES 8 A 164 LYS ASN GLN TYR ARG HIS TYR TRP SER GLU ASN LEU PHE SEQRES 9 A 164 GLN CYS PHE ASN CYS SER LEU CYS LEU ASN GLY THR VAL SEQRES 10 A 164 HIS LEU SER CYS GLN GLU LYS GLN ASN THR VAL CYS THR SEQRES 11 A 164 CYS HIS ALA GLY PHE PHE LEU ARG GLU ASN GLU CYS VAL SEQRES 12 A 164 SER CYS SER ASN CYS LYS LYS SER LEU GLU CYS THR LYS SEQRES 13 A 164 LEU CYS LEU PRO GLN ILE GLU ASN SEQRES 1 B 164 GLY PRO ARG ASP SER VAL CYS PRO GLN GLY LYS TYR ILE SEQRES 2 B 164 HIS PRO GLN ASN ASN SER ILE CYS CYS THR LYS CYS HIS SEQRES 3 B 164 LYS GLY THR TYR LEU TYR ASN ASP CYS PRO GLY PRO GLY SEQRES 4 B 164 GLN ASP THR ASP CYS ARG GLU CYS GLU SER GLY SER PHE SEQRES 5 B 164 THR ALA SER GLU ASN HIS LEU ARG HIS CYS LEU SER CYS SEQRES 6 B 164 SER LYS CYS ARG LYS GLU MET GLY GLN VAL GLU ILE SER SEQRES 7 B 164 SER CYS THR VAL ASP ARG ASP THR VAL CYS GLY CYS ARG SEQRES 8 B 164 LYS ASN GLN TYR ARG HIS TYR TRP SER GLU ASN LEU PHE SEQRES 9 B 164 GLN CYS PHE ASN CYS SER LEU CYS LEU ASN GLY THR VAL SEQRES 10 B 164 HIS LEU SER CYS GLN GLU LYS GLN ASN THR VAL CYS THR SEQRES 11 B 164 CYS HIS ALA GLY PHE PHE LEU ARG GLU ASN GLU CYS VAL SEQRES 12 B 164 SER CYS SER ASN CYS LYS LYS SER LEU GLU CYS THR LYS SEQRES 13 B 164 LEU CYS LEU PRO GLN ILE GLU ASN HET PO4 A 201 5 HET PO4 A 202 5 HET PO4 A 203 5 HET PO4 B 201 5 HET PO4 B 202 5 HET PO4 B 203 5 HET PO4 B 204 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 7(O4 P 3-) FORMUL 10 HOH *264(H2 O) HELIX 1 AA1 ARG A 77 GLY A 81 5 5 HELIX 2 AA2 ARG B 77 GLY B 81 5 5 SHEET 1 AA1 2 LYS A 19 HIS A 22 0 SHEET 2 AA1 2 ASN A 25 THR A 31 -1 O ILE A 28 N HIS A 22 SHEET 1 AA2 2 THR A 37 ASN A 41 0 SHEET 2 AA2 2 ASP A 51 GLU A 54 -1 O ASP A 51 N TYR A 40 SHEET 1 AA3 2 SER A 59 PHE A 60 0 SHEET 2 AA3 2 LEU A 71 SER A 72 -1 O LEU A 71 N PHE A 60 SHEET 1 AA4 2 VAL A 83 SER A 86 0 SHEET 2 AA4 2 VAL A 95 GLY A 97 -1 O GLY A 97 N VAL A 83 SHEET 1 AA5 2 GLN A 102 TYR A 106 0 SHEET 2 AA5 2 PHE A 112 ASN A 116 -1 O GLN A 113 N HIS A 105 SHEET 1 AA6 2 THR A 124 LEU A 127 0 SHEET 2 AA6 2 VAL A 136 THR A 138 -1 O VAL A 136 N HIS A 126 SHEET 1 AA7 2 LYS B 19 ILE B 21 0 SHEET 2 AA7 2 CYS B 29 THR B 31 -1 O CYS B 30 N TYR B 20 SHEET 1 AA8 2 THR B 37 ASN B 41 0 SHEET 2 AA8 2 ASP B 51 GLU B 54 -1 O ASP B 51 N TYR B 40 SHEET 1 AA9 2 SER B 59 PHE B 60 0 SHEET 2 AA9 2 LEU B 71 SER B 72 -1 O LEU B 71 N PHE B 60 SHEET 1 AB1 2 VAL B 83 SER B 86 0 SHEET 2 AB1 2 VAL B 95 GLY B 97 -1 O GLY B 97 N VAL B 83 SHEET 1 AB2 2 GLN B 102 TYR B 106 0 SHEET 2 AB2 2 PHE B 112 ASN B 116 -1 O GLN B 113 N HIS B 105 SHEET 1 AB3 2 GLY B 123 LEU B 127 0 SHEET 2 AB3 2 VAL B 136 CYS B 139 -1 O VAL B 136 N LEU B 127 SHEET 1 AB4 2 PHE B 144 LEU B 145 0 SHEET 2 AB4 2 CYS B 150 VAL B 151 -1 O VAL B 151 N PHE B 144 SSBOND 1 CYS A 15 CYS A 29 1555 1555 2.02 SSBOND 2 CYS A 30 CYS A 43 1555 1555 2.08 SSBOND 3 CYS A 33 CYS A 52 1555 1555 2.03 SSBOND 4 CYS A 55 CYS A 70 1555 1555 2.03 SSBOND 5 CYS A 73 CYS A 88 1555 1555 1.99 SSBOND 6 CYS A 76 CYS A 96 1555 1555 2.02 SSBOND 7 CYS A 98 CYS A 114 1555 1555 2.04 SSBOND 8 CYS A 117 CYS A 129 1555 1555 2.01 SSBOND 9 CYS A 120 CYS A 137 1555 1555 2.04 SSBOND 10 CYS B 15 CYS B 29 1555 1555 2.03 SSBOND 11 CYS B 30 CYS B 43 1555 1555 2.06 SSBOND 12 CYS B 33 CYS B 52 1555 1555 2.04 SSBOND 13 CYS B 55 CYS B 70 1555 1555 2.02 SSBOND 14 CYS B 73 CYS B 88 1555 1555 2.02 SSBOND 15 CYS B 76 CYS B 96 1555 1555 2.00 SSBOND 16 CYS B 98 CYS B 114 1555 1555 2.02 SSBOND 17 CYS B 117 CYS B 129 1555 1555 2.02 SSBOND 18 CYS B 120 CYS B 137 1555 1555 2.03 SSBOND 19 CYS B 139 CYS B 150 1555 1555 2.03 CRYST1 69.221 69.221 185.186 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014446 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014446 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005400 0.00000 CONECT 32 248 CONECT 248 32 CONECT 258 461 CONECT 304 581 CONECT 461 258 CONECT 581 304 CONECT 630 845 CONECT 845 630 CONECT 885 1112 CONECT 928 1230 CONECT 1112 885 CONECT 1230 928 CONECT 1247 1537 CONECT 1537 1247 CONECT 1581 1748 CONECT 1621 1873 CONECT 1748 1581 CONECT 1873 1621 CONECT 1924 2140 CONECT 2140 1924 CONECT 2150 2353 CONECT 2196 2473 CONECT 2353 2150 CONECT 2473 2196 CONECT 2522 2737 CONECT 2737 2522 CONECT 2777 3004 CONECT 2820 3122 CONECT 3004 2777 CONECT 3122 2820 CONECT 3139 3429 CONECT 3429 3139 CONECT 3473 3640 CONECT 3513 3765 CONECT 3640 3473 CONECT 3765 3513 CONECT 3789 3960 CONECT 3960 3789 CONECT 3993 3994 3995 3996 3997 CONECT 3994 3993 CONECT 3995 3993 CONECT 3996 3993 CONECT 3997 3993 CONECT 3998 3999 4000 4001 4002 CONECT 3999 3998 CONECT 4000 3998 CONECT 4001 3998 CONECT 4002 3998 CONECT 4003 4004 4005 4006 4007 CONECT 4004 4003 CONECT 4005 4003 CONECT 4006 4003 CONECT 4007 4003 CONECT 4008 4009 4010 4011 4012 CONECT 4009 4008 CONECT 4010 4008 CONECT 4011 4008 CONECT 4012 4008 CONECT 4013 4014 4015 4016 4017 CONECT 4014 4013 CONECT 4015 4013 CONECT 4016 4013 CONECT 4017 4013 CONECT 4018 4019 4020 4021 4022 CONECT 4019 4018 CONECT 4020 4018 CONECT 4021 4018 CONECT 4022 4018 CONECT 4023 4024 4025 4026 4027 CONECT 4024 4023 CONECT 4025 4023 CONECT 4026 4023 CONECT 4027 4023 MASTER 465 0 7 2 26 0 0 6 2372 2 73 26 END