HEADER STRUCTURAL PROTEIN 25-JUL-25 9S49 TITLE DROSOPHILA VIKING NC1 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIKING, ISOFORM A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VIKING,ISOFORM B,ISOFORM C; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: VKG, 1209, 6072, ALPHA(IV)2/VKG, COL4A2, COLIV, COLIV, SOURCE 6 COLIVALPHA2, COLL IV, COLL IVALPHA2, COLL-IV, COLL. IV, COLLAGEN-IV, SOURCE 7 CT25584, DMCOLA2, DMEL\CG16858, L(2)01209, VEG, VKG, VKGC, CG16858, SOURCE 8 DMEL_CG16858; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM_CELL_LINE: EXPI293F KEYWDS VIKING, NC1, COLLAGEN, COL4, COLIV, BASEMENT, MEMBRANE, DROSOPHILA, KEYWDS 2 MELANOGASTER, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.SNEE,C.LEVY,C.BALDOCK REVDAT 1 19-AUG-26 9S49 0 JRNL AUTH M.SNEE,C.BALDOCK JRNL TITL VIKING NC1 HOMO-OCTAMER JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 24029 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1170 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.8300 - 3.3000 1.00 3027 168 0.1866 0.2218 REMARK 3 2 3.3000 - 2.6200 1.00 2907 128 0.1894 0.2503 REMARK 3 3 2.6200 - 2.2900 1.00 2866 136 0.1829 0.2168 REMARK 3 4 2.2900 - 2.0800 1.00 2829 139 0.1697 0.2126 REMARK 3 5 2.0800 - 1.9300 1.00 2815 164 0.1888 0.2222 REMARK 3 6 1.9300 - 1.8200 1.00 2783 159 0.2158 0.2788 REMARK 3 7 1.8200 - 1.7300 1.00 2813 144 0.2466 0.2428 REMARK 3 8 1.7300 - 1.6500 1.00 2819 132 0.2893 0.3005 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.202 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.332 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 1514 REMARK 3 ANGLE : 1.512 2061 REMARK 3 CHIRALITY : 0.097 227 REMARK 3 PLANARITY : 0.015 262 REMARK 3 DIHEDRAL : 6.960 215 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -10.5481 -17.6364 -19.2989 REMARK 3 T TENSOR REMARK 3 T11: 0.3030 T22: 0.2171 REMARK 3 T33: 0.2473 T12: -0.0745 REMARK 3 T13: 0.0266 T23: -0.0313 REMARK 3 L TENSOR REMARK 3 L11: 2.5456 L22: 1.6359 REMARK 3 L33: 2.1332 L12: -1.2262 REMARK 3 L13: 0.5546 L23: -0.6541 REMARK 3 S TENSOR REMARK 3 S11: -0.0682 S12: -0.1728 S13: -0.0681 REMARK 3 S21: 0.1031 S22: -0.0104 S23: -0.0063 REMARK 3 S31: 0.3257 S32: -0.1189 S33: 0.0662 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9S49 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1292149741. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-23 REMARK 200 TEMPERATURE (KELVIN) : 99 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24061 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 66.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 25.80 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M NACL, 0.1M SODIUM CITRATE PH 4.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 39.47650 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 39.47650 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 62.18700 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 39.47650 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 39.47650 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 62.18700 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 39.47650 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 39.47650 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 62.18700 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 39.47650 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 39.47650 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 62.18700 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 39.47650 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 39.47650 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 62.18700 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 39.47650 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 39.47650 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 62.18700 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 39.47650 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 39.47650 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 62.18700 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 39.47650 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 39.47650 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 62.18700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 THR A 2 REMARK 465 GLY A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 ASP A 6 REMARK 465 TYR A 7 REMARK 465 LYS A 8 REMARK 465 ASP A 9 REMARK 465 ASP A 10 REMARK 465 ASP A 11 REMARK 465 ASP A 12 REMARK 465 LYS A 13 REMARK 465 GLY A 14 REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 SER A 17 REMARK 465 ALA A 53 REMARK 465 SER A 54 REMARK 465 ARG A 55 REMARK 465 ALA A 56 REMARK 465 VAL A 57 REMARK 465 GLU A 101 REMARK 465 PRO A 102 REMARK 465 MET A 103 REMARK 465 PRO A 104 REMARK 465 MET A 105 REMARK 465 THR A 106 REMARK 465 MET A 107 REMARK 465 THR A 108 REMARK 465 PRO A 109 REMARK 465 ILE A 110 REMARK 465 GLN A 111 REMARK 465 GLY A 112 REMARK 465 ARG A 113 REMARK 465 ASP A 114 REMARK 465 ASN A 164 REMARK 465 VAL A 165 REMARK 465 GLY A 166 REMARK 465 GLY A 167 REMARK 465 VAL A 168 REMARK 465 GLU A 212 REMARK 465 GLN A 213 REMARK 465 ASP A 214 REMARK 465 GLN A 215 REMARK 465 PHE A 216 REMARK 465 VAL A 217 REMARK 465 GLN A 218 REMARK 465 PRO A 219 REMARK 465 ARG A 220 REMARK 465 GLN A 221 REMARK 465 GLN A 222 REMARK 465 THR A 223 REMARK 465 LEU A 224 REMARK 465 LYS A 225 REMARK 465 ALA A 226 REMARK 465 ASP A 227 REMARK 465 GLY A 242 REMARK 465 ASN A 243 REMARK 465 SER A 244 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 117 CG CD CE NZ REMARK 470 ASP A 163 CG OD1 OD2 REMARK 470 GLU A 211 CG CD OE1 OE2 REMARK 470 LYS A 231 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH11 ARG A 130 O HOH A 302 1.45 REMARK 500 NE2 GLN A 185 O HOH A 301 1.96 REMARK 500 NH1 ARG A 130 O HOH A 302 1.97 REMARK 500 O HOH A 378 O HOH A 383 2.03 REMARK 500 O HOH A 342 O HOH A 349 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 388 O HOH A 402 4555 1.76 REMARK 500 O HOH A 306 O HOH A 368 16444 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 162 -78.46 -131.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 408 DISTANCE = 6.04 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8TYS RELATED DB: PDB REMARK 900 8TYS CONTAINS THE BIOLOGICALLY RELEVANT HETERO-HEXAMER CONTAINING REMARK 900 VIKING DBREF 9S49 A 17 244 UNP Q9VMV5 Q9VMV5_DROME 1513 1740 SEQADV 9S49 GLU A 1 UNP Q9VMV5 EXPRESSION TAG SEQADV 9S49 THR A 2 UNP Q9VMV5 EXPRESSION TAG SEQADV 9S49 GLY A 3 UNP Q9VMV5 EXPRESSION TAG SEQADV 9S49 GLY A 4 UNP Q9VMV5 EXPRESSION TAG SEQADV 9S49 SER A 5 UNP Q9VMV5 EXPRESSION TAG SEQADV 9S49 ASP A 6 UNP Q9VMV5 EXPRESSION TAG SEQADV 9S49 TYR A 7 UNP Q9VMV5 EXPRESSION TAG SEQADV 9S49 LYS A 8 UNP Q9VMV5 EXPRESSION TAG SEQADV 9S49 ASP A 9 UNP Q9VMV5 EXPRESSION TAG SEQADV 9S49 ASP A 10 UNP Q9VMV5 EXPRESSION TAG SEQADV 9S49 ASP A 11 UNP Q9VMV5 EXPRESSION TAG SEQADV 9S49 ASP A 12 UNP Q9VMV5 EXPRESSION TAG SEQADV 9S49 LYS A 13 UNP Q9VMV5 EXPRESSION TAG SEQADV 9S49 GLY A 14 UNP Q9VMV5 EXPRESSION TAG SEQADV 9S49 GLY A 15 UNP Q9VMV5 EXPRESSION TAG SEQADV 9S49 SER A 16 UNP Q9VMV5 EXPRESSION TAG SEQRES 1 A 244 GLU THR GLY GLY SER ASP TYR LYS ASP ASP ASP ASP LYS SEQRES 2 A 244 GLY GLY SER SER ARG GLY PHE ILE PHE ALA ARG HIS SER SEQRES 3 A 244 GLN SER VAL HIS VAL PRO GLN CYS PRO ALA ASN THR ASN SEQRES 4 A 244 LEU LEU TRP GLU GLY TYR SER LEU SER GLY ASN VAL ALA SEQRES 5 A 244 ALA SER ARG ALA VAL GLY GLN ASP LEU GLY GLN SER GLY SEQRES 6 A 244 SER CYS MET MET ARG PHE THR THR MET PRO TYR MET LEU SEQRES 7 A 244 CYS ASP ILE THR ASN VAL CYS HIS PHE ALA GLN ASN ASN SEQRES 8 A 244 ASP ASP SER LEU TRP LEU SER THR ALA GLU PRO MET PRO SEQRES 9 A 244 MET THR MET THR PRO ILE GLN GLY ARG ASP LEU MET LYS SEQRES 10 A 244 TYR ILE SER ARG CYS VAL VAL CYS GLU THR THR THR ARG SEQRES 11 A 244 ILE ILE ALA LEU HIS SER GLN SER MET SER ILE PRO ASP SEQRES 12 A 244 CYS PRO GLY GLY TRP GLU GLU MET TRP THR GLY TYR SER SEQRES 13 A 244 TYR PHE MET SER THR LEU ASP ASN VAL GLY GLY VAL GLY SEQRES 14 A 244 GLN ASN LEU VAL SER PRO GLY SER CYS LEU GLU GLU PHE SEQRES 15 A 244 ARG ALA GLN PRO VAL ILE GLU CYS HIS GLY HIS GLY ARG SEQRES 16 A 244 CYS ASN TYR TYR ASP ALA LEU ALA SER PHE TRP LEU THR SEQRES 17 A 244 VAL ILE GLU GLU GLN ASP GLN PHE VAL GLN PRO ARG GLN SEQRES 18 A 244 GLN THR LEU LYS ALA ASP PHE THR SER LYS ILE SER ARG SEQRES 19 A 244 CYS THR VAL CYS ARG ARG ARG GLY ASN SER FORMUL 2 HOH *108(H2 O) HELIX 1 AA1 GLN A 63 GLY A 65 5 3 HELIX 2 AA2 LEU A 115 ILE A 119 5 5 HELIX 3 AA3 SER A 174 GLY A 176 5 3 HELIX 4 AA4 PHE A 228 ILE A 232 5 5 SHEET 1 AA1 4 PHE A 20 HIS A 25 0 SHEET 2 AA1 4 ARG A 121 THR A 127 -1 O THR A 127 N PHE A 20 SHEET 3 AA1 4 ASN A 39 VAL A 51 -1 N LEU A 41 O VAL A 124 SHEET 4 AA1 4 CYS A 67 MET A 68 -1 O MET A 68 N TYR A 45 SHEET 1 AA2 6 PHE A 20 HIS A 25 0 SHEET 2 AA2 6 ARG A 121 THR A 127 -1 O THR A 127 N PHE A 20 SHEET 3 AA2 6 ASN A 39 VAL A 51 -1 N LEU A 41 O VAL A 124 SHEET 4 AA2 6 ASP A 93 LEU A 97 -1 O ASP A 93 N VAL A 51 SHEET 5 AA2 6 VAL A 187 CYS A 190 -1 O CYS A 190 N SER A 94 SHEET 6 AA2 6 CYS A 196 ASN A 197 -1 O ASN A 197 N GLU A 189 SHEET 1 AA3 2 MET A 77 CYS A 79 0 SHEET 2 AA3 2 CYS A 85 PHE A 87 -1 O HIS A 86 N LEU A 78 SHEET 1 AA4 4 ILE A 131 HIS A 135 0 SHEET 2 AA4 4 ARG A 234 ARG A 240 -1 O CYS A 238 N ILE A 132 SHEET 3 AA4 4 TRP A 148 THR A 161 -1 N GLU A 149 O ARG A 239 SHEET 4 AA4 4 CYS A 178 LEU A 179 -1 O LEU A 179 N TYR A 155 SHEET 1 AA5 4 ILE A 131 HIS A 135 0 SHEET 2 AA5 4 ARG A 234 ARG A 240 -1 O CYS A 238 N ILE A 132 SHEET 3 AA5 4 TRP A 148 THR A 161 -1 N GLU A 149 O ARG A 239 SHEET 4 AA5 4 ALA A 203 TRP A 206 -1 O PHE A 205 N MET A 159 SSBOND 1 CYS A 34 CYS A 125 1555 1555 1.96 SSBOND 2 CYS A 67 CYS A 122 1555 1555 2.12 SSBOND 3 CYS A 79 CYS A 85 1555 1555 2.02 SSBOND 4 CYS A 144 CYS A 238 1555 1555 2.05 SSBOND 5 CYS A 178 CYS A 235 1555 1555 2.10 SSBOND 6 CYS A 190 CYS A 196 1555 1555 2.02 CRYST1 78.953 78.953 124.374 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012666 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012666 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008040 0.00000 CONECT 265 1359 CONECT 641 1317 CONECT 873 958 CONECT 958 873 CONECT 1317 641 CONECT 1359 265 CONECT 1676 2806 CONECT 2100 2766 CONECT 2315 2398 CONECT 2398 2315 CONECT 2766 2100 CONECT 2806 1676 MASTER 425 0 0 4 20 0 0 6 1539 1 12 19 END