HEADER DNA BINDING PROTEIN 28-JUL-25 9S51 TITLE ACUB FROM GEOBACILLUS STEAROTHERMOPHILUS WITH ADP AND ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACUB FROM GEOBACILLUS STEAROTHERMOPHILUS; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: C-TERMINAL HEXA-HIS-TAG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS REPRESSOR, ACETOIN UTILIZATION OPERON, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.JANETZKY,G.J.PALM,M.LAMMERS REVDAT 1 25-FEB-26 9S51 0 JRNL AUTH M.JANETZKY,G.J.PALM,M.LAMMERS JRNL TITL ACSA AND ACU OPERON REGULATION BY ACUB JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 (REFMACAT 0.4.105) REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 17738 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.922 REMARK 3 FREE R VALUE TEST SET COUNT : 873 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.53 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.60 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1193 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.3760 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.4090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3127 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 125 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.07900 REMARK 3 B22 (A**2) : -1.78800 REMARK 3 B33 (A**2) : -3.29100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.458 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.276 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.297 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 33.403 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3326 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3242 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4551 ; 1.864 ; 1.824 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7455 ; 0.569 ; 1.746 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 398 ; 7.200 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 22 ; 8.121 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 555 ;16.225 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 553 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3737 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 683 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 571 ; 0.231 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 40 ; 0.287 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1538 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 42 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1598 ; 6.476 ; 6.580 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1599 ; 6.476 ; 6.583 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1991 ; 9.140 ;11.815 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1992 ; 9.139 ;11.817 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1728 ; 7.212 ; 7.166 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1729 ; 7.211 ; 7.166 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2559 ;10.191 ;12.906 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2560 ;10.189 ;12.905 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 208 NULL REMARK 3 1 B 2 B 208 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Ap 2 Ap 303 REMARK 3 ORIGIN FOR THE GROUP (A): -4.1422 7.3409 -10.0882 REMARK 3 T TENSOR REMARK 3 T11: 0.0128 T22: 0.0651 REMARK 3 T33: 0.0526 T12: -0.0027 REMARK 3 T13: -0.0163 T23: -0.0339 REMARK 3 L TENSOR REMARK 3 L11: 1.1337 L22: 3.3288 REMARK 3 L33: 2.5858 L12: 1.1745 REMARK 3 L13: -1.2786 L23: -1.8313 REMARK 3 S TENSOR REMARK 3 S11: -0.0497 S12: -0.0672 S13: 0.1271 REMARK 3 S21: 0.0056 S22: 0.0142 S23: 0.1360 REMARK 3 S31: -0.0408 S32: 0.0156 S33: 0.0354 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Bp 2 Bp 303 REMARK 3 ORIGIN FOR THE GROUP (A): -7.5550 9.3202 -3.2997 REMARK 3 T TENSOR REMARK 3 T11: 0.0286 T22: 0.0478 REMARK 3 T33: 0.0580 T12: 0.0153 REMARK 3 T13: 0.0084 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 1.1256 L22: 3.4969 REMARK 3 L33: 0.7016 L12: -0.0656 REMARK 3 L13: -0.1251 L23: 0.6683 REMARK 3 S TENSOR REMARK 3 S11: -0.0262 S12: -0.0996 S13: 0.2108 REMARK 3 S21: 0.0700 S22: 0.0249 S23: 0.1570 REMARK 3 S31: 0.0873 S32: 0.0281 S33: 0.0014 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9S51 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1292149459. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05960 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : DOUBLE MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION JAN 19, 2025 REMARK 200 DATA SCALING SOFTWARE : XSCALE VERSION JAN 19, 2025 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17740 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.530 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.17000 REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.08500 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THIN PLATE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 20000, 100 MM MES PH 6.5, REMARK 280 SOAKED 30 MIN IN 5 MM AMP + 5 MM ATP CRYO: 10% PEG 20000, 15% REMARK 280 PEG 400, 100 MM MES PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.21650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.57850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.25650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.57850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.21650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.25650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 58 REMARK 465 PRO A 59 REMARK 465 SER A 60 REMARK 465 ILE A 61 REMARK 465 PHE A 62 REMARK 465 ASN A 209 REMARK 465 LEU A 210 REMARK 465 PRO A 211 REMARK 465 GLY A 212 REMARK 465 VAL A 213 REMARK 465 THR A 214 REMARK 465 SER A 215 REMARK 465 GLY A 216 REMARK 465 SER A 217 REMARK 465 SER A 218 REMARK 465 HIS A 219 REMARK 465 HIS A 220 REMARK 465 HIS A 221 REMARK 465 HIS A 222 REMARK 465 HIS A 223 REMARK 465 HIS A 224 REMARK 465 ALA B 57 REMARK 465 SER B 58 REMARK 465 PRO B 59 REMARK 465 SER B 60 REMARK 465 ILE B 61 REMARK 465 PHE B 62 REMARK 465 HIS B 63 REMARK 465 LEU B 64 REMARK 465 HIS B 65 REMARK 465 GLU B 66 REMARK 465 HIS B 67 REMARK 465 PRO B 211 REMARK 465 GLY B 212 REMARK 465 VAL B 213 REMARK 465 THR B 214 REMARK 465 SER B 215 REMARK 465 GLY B 216 REMARK 465 SER B 217 REMARK 465 SER B 218 REMARK 465 HIS B 219 REMARK 465 HIS B 220 REMARK 465 HIS B 221 REMARK 465 HIS B 222 REMARK 465 HIS B 223 REMARK 465 HIS B 224 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 210 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 151 CG - SD - CE ANGL. DEV. = -10.2 DEGREES REMARK 500 ARG A 162 CB - CA - C ANGL. DEV. = -14.6 DEGREES REMARK 500 MET A 189 CG - SD - CE ANGL. DEV. = 13.7 DEGREES REMARK 500 ARG B 162 CB - CA - C ANGL. DEV. = -13.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 55 2.34 -64.21 REMARK 500 ASP A 56 59.60 -103.98 REMARK 500 LEU A 64 -64.64 -133.07 REMARK 500 HIS A 65 -8.44 -57.04 REMARK 500 ASN B 147 55.97 -90.86 REMARK 500 ASN B 209 -86.88 -117.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TRP A 207 PRO A 208 -147.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 16 0.11 SIDE CHAIN REMARK 500 ARG A 34 0.09 SIDE CHAIN REMARK 500 ARG A 55 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9S51 A 2 224 PDB 9S51 9S51 2 224 DBREF 9S51 B 2 224 PDB 9S51 9S51 2 224 SEQRES 1 A 223 ALA LEU VAL GLU GLN ALA MET LYS ALA PRO VAL ILE THR SEQRES 2 A 223 LEU ARG ALA THR ASN THR ILE ALA GLU ALA LEU GLN LEU SEQRES 3 A 223 LEU ARG HIS HIS ARG ILE ARG HIS LEU PRO VAL VAL ASP SEQRES 4 A 223 GLY GLU GLY ARG LEU LEU GLY LEU VAL THR SER GLN ASP SEQRES 5 A 223 LEU ARG ASP ALA SER PRO SER ILE PHE HIS LEU HIS GLU SEQRES 6 A 223 HIS LEU GLU ASP LEU GLN LYS PRO VAL SER THR ILE MET SEQRES 7 A 223 LYS THR ASP LEU ILE VAL GLY HIS PRO LEU ASP PHE VAL SEQRES 8 A 223 GLU GLU VAL ALA ALA LEU PHE TYR GLU HIS ARG ILE GLY SEQRES 9 A 223 CYS LEU PRO ILE VAL ASN HIS GLY LYS LEU VAL GLY ILE SEQRES 10 A 223 ILE THR GLN THR ASP LEU LEU ARG THR PHE ILE GLU LEU SEQRES 11 A 223 THR GLY VAL HIS GLN PRO GLY SER GLN ILE GLU ILE LYS SEQRES 12 A 223 VAL PRO ASN GLU ALA GLY MET LEU SER LYS ALA ALA ALA SEQRES 13 A 223 ILE ILE SER GLU ARG HIS VAL ASN ILE ALA SER VAL LEU SEQRES 14 A 223 VAL TYR PRO ALA PRO ASP PRO ASN GLU LYS ILE LEU VAL SEQRES 15 A 223 PHE ARG VAL GLN THR MET ASN PRO LEU PRO LEU ILE ARG SEQRES 16 A 223 ASP LEU GLN ASN ALA GLY TYR HIS VAL LEU TRP PRO ASN SEQRES 17 A 223 LEU PRO GLY VAL THR SER GLY SER SER HIS HIS HIS HIS SEQRES 18 A 223 HIS HIS SEQRES 1 B 223 ALA LEU VAL GLU GLN ALA MET LYS ALA PRO VAL ILE THR SEQRES 2 B 223 LEU ARG ALA THR ASN THR ILE ALA GLU ALA LEU GLN LEU SEQRES 3 B 223 LEU ARG HIS HIS ARG ILE ARG HIS LEU PRO VAL VAL ASP SEQRES 4 B 223 GLY GLU GLY ARG LEU LEU GLY LEU VAL THR SER GLN ASP SEQRES 5 B 223 LEU ARG ASP ALA SER PRO SER ILE PHE HIS LEU HIS GLU SEQRES 6 B 223 HIS LEU GLU ASP LEU GLN LYS PRO VAL SER THR ILE MET SEQRES 7 B 223 LYS THR ASP LEU ILE VAL GLY HIS PRO LEU ASP PHE VAL SEQRES 8 B 223 GLU GLU VAL ALA ALA LEU PHE TYR GLU HIS ARG ILE GLY SEQRES 9 B 223 CYS LEU PRO ILE VAL ASN HIS GLY LYS LEU VAL GLY ILE SEQRES 10 B 223 ILE THR GLN THR ASP LEU LEU ARG THR PHE ILE GLU LEU SEQRES 11 B 223 THR GLY VAL HIS GLN PRO GLY SER GLN ILE GLU ILE LYS SEQRES 12 B 223 VAL PRO ASN GLU ALA GLY MET LEU SER LYS ALA ALA ALA SEQRES 13 B 223 ILE ILE SER GLU ARG HIS VAL ASN ILE ALA SER VAL LEU SEQRES 14 B 223 VAL TYR PRO ALA PRO ASP PRO ASN GLU LYS ILE LEU VAL SEQRES 15 B 223 PHE ARG VAL GLN THR MET ASN PRO LEU PRO LEU ILE ARG SEQRES 16 B 223 ASP LEU GLN ASN ALA GLY TYR HIS VAL LEU TRP PRO ASN SEQRES 17 B 223 LEU PRO GLY VAL THR SER GLY SER SER HIS HIS HIS HIS SEQRES 18 B 223 HIS HIS HET ADP A 301 39 HET ATP A 302 43 HET EDO A 303 10 HET CL A 304 1 HET CL A 305 1 HET ADP B 301 39 HET ADP B 302 39 HET PEG B 303 17 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ADP 3(C10 H15 N5 O10 P2) FORMUL 4 ATP C10 H16 N5 O13 P3 FORMUL 5 EDO C2 H6 O2 FORMUL 6 CL 2(CL 1-) FORMUL 10 PEG C4 H10 O3 FORMUL 11 HOH *4(H2 O) HELIX 1 AA1 LEU A 3 ALA A 7 5 5 HELIX 2 AA2 THR A 20 ARG A 32 1 13 HELIX 3 AA3 SER A 51 ARG A 55 1 5 HELIX 4 AA4 GLU A 66 GLN A 72 1 7 HELIX 5 AA5 PRO A 74 ILE A 78 5 5 HELIX 6 AA6 PHE A 91 ARG A 103 1 13 HELIX 7 AA7 GLN A 121 THR A 132 1 12 HELIX 8 AA8 GLY A 150 GLU A 161 1 12 HELIX 9 AA9 PRO A 191 ALA A 201 1 11 HELIX 10 AB1 LEU B 3 ALA B 7 5 5 HELIX 11 AB2 THR B 20 ARG B 32 1 13 HELIX 12 AB3 SER B 51 ASP B 56 1 6 HELIX 13 AB4 PRO B 74 ILE B 78 5 5 HELIX 14 AB5 PHE B 91 ARG B 103 1 13 HELIX 15 AB6 GLN B 121 THR B 132 1 12 HELIX 16 AB7 GLY B 150 GLU B 161 1 12 HELIX 17 AB8 PRO B 191 ALA B 201 1 11 SHEET 1 AA1 3 LEU A 15 ARG A 16 0 SHEET 2 AA1 3 HIS A 35 VAL A 39 1 O VAL A 39 N LEU A 15 SHEET 3 AA1 3 LEU A 45 THR A 50 -1 O GLY A 47 N VAL A 38 SHEET 1 AA2 2 CYS A 106 ASN A 111 0 SHEET 2 AA2 2 LYS A 114 THR A 120 -1 O GLY A 117 N ILE A 109 SHEET 1 AA3 4 ILE A 166 PRO A 173 0 SHEET 2 AA3 4 GLU A 179 VAL A 186 -1 O VAL A 183 N LEU A 170 SHEET 3 AA3 4 SER A 139 PRO A 146 -1 N ILE A 143 O LEU A 182 SHEET 4 AA3 4 HIS A 204 VAL A 205 -1 O HIS A 204 N LYS A 144 SHEET 1 AA4 3 LEU B 15 ARG B 16 0 SHEET 2 AA4 3 HIS B 35 VAL B 39 1 O VAL B 39 N LEU B 15 SHEET 3 AA4 3 LEU B 45 THR B 50 -1 O GLY B 47 N VAL B 38 SHEET 1 AA5 2 CYS B 106 ASN B 111 0 SHEET 2 AA5 2 LYS B 114 THR B 120 -1 O GLY B 117 N ILE B 109 SHEET 1 AA6 4 ILE B 166 PRO B 173 0 SHEET 2 AA6 4 GLU B 179 VAL B 186 -1 O VAL B 183 N LEU B 170 SHEET 3 AA6 4 SER B 139 PRO B 146 -1 N ILE B 143 O LEU B 182 SHEET 4 AA6 4 HIS B 204 LEU B 206 -1 O HIS B 204 N LYS B 144 CISPEP 1 ALA A 10 PRO A 11 0 -5.80 CISPEP 2 ALA B 10 PRO B 11 0 -4.05 CRYST1 52.433 96.513 101.157 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019072 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010361 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009886 0.00000 CONECT 6411 6412 6413 6414 6418 CONECT 6412 6411 CONECT 6413 6411 CONECT 6414 6411 CONECT 6415 6416 6417 6418 6419 CONECT 6416 6415 CONECT 6417 6415 CONECT 6418 6411 6415 CONECT 6419 6415 6420 CONECT 6420 6419 6421 6438 6439 CONECT 6421 6420 6422 6423 6440 CONECT 6422 6421 6427 CONECT 6423 6421 6424 6425 6441 CONECT 6424 6423 6442 CONECT 6425 6423 6426 6427 6443 CONECT 6426 6425 6444 CONECT 6427 6422 6425 6428 6445 CONECT 6428 6427 6429 6437 CONECT 6429 6428 6430 6446 CONECT 6430 6429 6431 CONECT 6431 6430 6432 6437 CONECT 6432 6431 6433 6434 CONECT 6433 6432 6447 6448 CONECT 6434 6432 6435 CONECT 6435 6434 6436 6449 CONECT 6436 6435 6437 CONECT 6437 6428 6431 6436 CONECT 6438 6420 CONECT 6439 6420 CONECT 6440 6421 CONECT 6441 6423 CONECT 6442 6424 CONECT 6443 6425 CONECT 6444 6426 CONECT 6445 6427 CONECT 6446 6429 CONECT 6447 6433 CONECT 6448 6433 CONECT 6449 6435 CONECT 6450 6451 6452 6453 6457 CONECT 6451 6450 CONECT 6452 6450 CONECT 6453 6450 CONECT 6454 6455 6456 6457 6461 CONECT 6455 6454 CONECT 6456 6454 CONECT 6457 6450 6454 CONECT 6458 6459 6460 6461 6462 CONECT 6459 6458 CONECT 6460 6458 CONECT 6461 6454 6458 CONECT 6462 6458 6463 CONECT 6463 6462 6464 6481 6482 CONECT 6464 6463 6465 6466 6483 CONECT 6465 6464 6470 CONECT 6466 6464 6467 6468 6484 CONECT 6467 6466 6485 CONECT 6468 6466 6469 6470 6486 CONECT 6469 6468 6487 CONECT 6470 6465 6468 6471 6488 CONECT 6471 6470 6472 6480 CONECT 6472 6471 6473 6489 CONECT 6473 6472 6474 CONECT 6474 6473 6475 6480 CONECT 6475 6474 6476 6477 CONECT 6476 6475 6490 6491 CONECT 6477 6475 6478 CONECT 6478 6477 6479 6492 CONECT 6479 6478 6480 CONECT 6480 6471 6474 6479 CONECT 6481 6463 CONECT 6482 6463 CONECT 6483 6464 CONECT 6484 6466 CONECT 6485 6467 CONECT 6486 6468 CONECT 6487 6469 CONECT 6488 6470 CONECT 6489 6472 CONECT 6490 6476 CONECT 6491 6476 CONECT 6492 6478 CONECT 6493 6494 6495 6497 6498 CONECT 6494 6493 6499 CONECT 6495 6493 6496 6500 6501 CONECT 6496 6495 6502 CONECT 6497 6493 CONECT 6498 6493 CONECT 6499 6494 CONECT 6500 6495 CONECT 6501 6495 CONECT 6502 6496 CONECT 6505 6506 6507 6508 6512 CONECT 6506 6505 CONECT 6507 6505 CONECT 6508 6505 CONECT 6509 6510 6511 6512 6513 CONECT 6510 6509 CONECT 6511 6509 CONECT 6512 6505 6509 CONECT 6513 6509 6514 CONECT 6514 6513 6515 6532 6533 CONECT 6515 6514 6516 6517 6534 CONECT 6516 6515 6521 CONECT 6517 6515 6518 6519 6535 CONECT 6518 6517 6536 CONECT 6519 6517 6520 6521 6537 CONECT 6520 6519 6538 CONECT 6521 6516 6519 6522 6539 CONECT 6522 6521 6523 6531 CONECT 6523 6522 6524 6540 CONECT 6524 6523 6525 CONECT 6525 6524 6526 6531 CONECT 6526 6525 6527 6528 CONECT 6527 6526 6541 6542 CONECT 6528 6526 6529 CONECT 6529 6528 6530 6543 CONECT 6530 6529 6531 CONECT 6531 6522 6525 6530 CONECT 6532 6514 CONECT 6533 6514 CONECT 6534 6515 CONECT 6535 6517 CONECT 6536 6518 CONECT 6537 6519 CONECT 6538 6520 CONECT 6539 6521 CONECT 6540 6523 CONECT 6541 6527 CONECT 6542 6527 CONECT 6543 6529 CONECT 6544 6545 6546 6547 6551 CONECT 6545 6544 CONECT 6546 6544 CONECT 6547 6544 CONECT 6548 6549 6550 6551 6552 CONECT 6549 6548 CONECT 6550 6548 CONECT 6551 6544 6548 CONECT 6552 6548 6553 CONECT 6553 6552 6554 6571 6572 CONECT 6554 6553 6555 6556 6573 CONECT 6555 6554 6560 CONECT 6556 6554 6557 6558 6574 CONECT 6557 6556 6575 CONECT 6558 6556 6559 6560 6576 CONECT 6559 6558 6577 CONECT 6560 6555 6558 6561 6578 CONECT 6561 6560 6562 6570 CONECT 6562 6561 6563 6579 CONECT 6563 6562 6564 CONECT 6564 6563 6565 6570 CONECT 6565 6564 6566 6567 CONECT 6566 6565 6580 6581 CONECT 6567 6565 6568 CONECT 6568 6567 6569 6582 CONECT 6569 6568 6570 CONECT 6570 6561 6564 6569 CONECT 6571 6553 CONECT 6572 6553 CONECT 6573 6554 CONECT 6574 6556 CONECT 6575 6557 CONECT 6576 6558 CONECT 6577 6559 CONECT 6578 6560 CONECT 6579 6562 CONECT 6580 6566 CONECT 6581 6566 CONECT 6582 6568 CONECT 6583 6584 6585 6590 6591 CONECT 6584 6583 6592 CONECT 6585 6583 6586 6593 6594 CONECT 6586 6585 6587 CONECT 6587 6586 6588 6595 6596 CONECT 6588 6587 6589 6597 6598 CONECT 6589 6588 6599 CONECT 6590 6583 CONECT 6591 6583 CONECT 6592 6584 CONECT 6593 6585 CONECT 6594 6585 CONECT 6595 6587 CONECT 6596 6587 CONECT 6597 6588 CONECT 6598 6588 CONECT 6599 6589 MASTER 414 0 8 17 18 0 0 6 3256 2 187 36 END