HEADER DNA BINDING PROTEIN 28-JUL-25 9S52 TITLE ACUB FROM GEOBACILLUS STEAROTHERMOPHILUS WITH AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACUB FROM GEOBACILLUS STEAROTHERMOPHILUS; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: C-TERMINAL HEXA-HIS-TAG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS REPRESSOR, ACETOIN UTILIZATION OPERON, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.JANETZKY,G.J.PALM,M.LAMMERS REVDAT 1 25-FEB-26 9S52 0 JRNL AUTH M.JANETZKY,G.J.PALM,M.LAMMERS JRNL TITL ACSA AND ACU OPERON REGULATION BY ACUB JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 (REFMACAT 0.4.105) REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 23730 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.259 REMARK 3 FREE R VALUE TEST SET COUNT : 1248 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1598 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3180 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 53 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.02000 REMARK 3 B22 (A**2) : 0.58800 REMARK 3 B33 (A**2) : -1.60800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.284 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.226 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.205 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.963 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3366 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3290 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4599 ; 1.747 ; 1.817 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7569 ; 0.553 ; 1.743 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 406 ; 7.089 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 22 ; 9.737 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 561 ;15.552 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 556 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3807 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 697 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 561 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 67 ; 0.217 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1586 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 65 ; 0.199 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1627 ; 3.495 ; 3.308 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1628 ; 3.494 ; 3.310 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2029 ; 5.479 ; 5.931 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2030 ; 5.478 ; 5.932 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1739 ; 3.794 ; 3.843 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1740 ; 3.793 ; 3.843 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2569 ; 6.086 ; 6.830 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2570 ; 6.085 ; 6.830 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 208 NULL REMARK 3 1 B 2 B 208 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Ap 2 Ap 303 REMARK 3 ORIGIN FOR THE GROUP (A): -4.0150 7.9586 -10.4608 REMARK 3 T TENSOR REMARK 3 T11: 0.0925 T22: 0.0026 REMARK 3 T33: 0.0451 T12: -0.0150 REMARK 3 T13: -0.0069 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.6532 L22: 2.3981 REMARK 3 L33: 1.6877 L12: 0.8699 REMARK 3 L13: -0.9432 L23: -1.0776 REMARK 3 S TENSOR REMARK 3 S11: -0.0324 S12: 0.0127 S13: 0.0712 REMARK 3 S21: -0.0339 S22: 0.0259 S23: 0.1374 REMARK 3 S31: 0.0667 S32: -0.0216 S33: 0.0065 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Bp 2 Bp 303 REMARK 3 ORIGIN FOR THE GROUP (A): -7.7271 9.6950 -3.6178 REMARK 3 T TENSOR REMARK 3 T11: 0.0714 T22: 0.0086 REMARK 3 T33: 0.0391 T12: -0.0020 REMARK 3 T13: 0.0090 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.5508 L22: 2.4489 REMARK 3 L33: 0.5211 L12: -0.1279 REMARK 3 L13: -0.0218 L23: 0.5087 REMARK 3 S TENSOR REMARK 3 S11: -0.0219 S12: 0.0202 S13: 0.0925 REMARK 3 S21: 0.0954 S22: -0.0183 S23: 0.0328 REMARK 3 S31: 0.1279 S32: -0.0243 S33: 0.0402 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9S52 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1292149466. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : SILICON 111 REMARK 200 OPTICS : DOUBLE MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION JUN 30, 2024 REMARK 200 DATA SCALING SOFTWARE : XSCALE VERSION JUN 30, 2024 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23740 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.27600 REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.54900 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THIN PLATE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 20000, 100 MM MES PH 6.5, REMARK 280 SOAKED 30 MIN IN 10 MM AMP CRYO: 10% PEG 20000, 15% PEG 400, 100 REMARK 280 MM MES PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.34300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.93350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.20700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.93350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.34300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.20700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 209 REMARK 465 LEU A 210 REMARK 465 PRO A 211 REMARK 465 GLY A 212 REMARK 465 VAL A 213 REMARK 465 THR A 214 REMARK 465 SER A 215 REMARK 465 GLY A 216 REMARK 465 SER A 217 REMARK 465 SER A 218 REMARK 465 HIS A 219 REMARK 465 HIS A 220 REMARK 465 HIS A 221 REMARK 465 HIS A 222 REMARK 465 HIS A 223 REMARK 465 HIS A 224 REMARK 465 SER B 58 REMARK 465 PRO B 59 REMARK 465 SER B 60 REMARK 465 ILE B 61 REMARK 465 PHE B 62 REMARK 465 HIS B 63 REMARK 465 LEU B 64 REMARK 465 HIS B 65 REMARK 465 GLU B 66 REMARK 465 PRO B 211 REMARK 465 GLY B 212 REMARK 465 VAL B 213 REMARK 465 THR B 214 REMARK 465 SER B 215 REMARK 465 GLY B 216 REMARK 465 SER B 217 REMARK 465 SER B 218 REMARK 465 HIS B 219 REMARK 465 HIS B 220 REMARK 465 HIS B 221 REMARK 465 HIS B 222 REMARK 465 HIS B 223 REMARK 465 HIS B 224 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 210 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE2 HIS A 35 O2P AMP A 302 1.54 REMARK 500 HD1 HIS A 63 OE1 GLU A 66 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 57 -62.86 -91.13 REMARK 500 SER A 58 118.22 -37.52 REMARK 500 PRO A 59 -78.13 -59.21 REMARK 500 SER A 60 -131.98 -140.07 REMARK 500 ASN B 209 -89.91 -121.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 60 ILE A 61 144.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 16 0.07 SIDE CHAIN REMARK 500 ARG B 32 0.08 SIDE CHAIN REMARK 500 ARG B 34 0.08 SIDE CHAIN REMARK 500 ARG B 103 0.08 SIDE CHAIN REMARK 500 ARG B 162 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9S52 A 2 224 PDB 9S52 9S52 2 224 DBREF 9S52 B 2 224 PDB 9S52 9S52 2 224 SEQRES 1 A 223 ALA LEU VAL GLU GLN ALA MET LYS ALA PRO VAL ILE THR SEQRES 2 A 223 LEU ARG ALA THR ASN THR ILE ALA GLU ALA LEU GLN LEU SEQRES 3 A 223 LEU ARG HIS HIS ARG ILE ARG HIS LEU PRO VAL VAL ASP SEQRES 4 A 223 GLY GLU GLY ARG LEU LEU GLY LEU VAL THR SER GLN ASP SEQRES 5 A 223 LEU ARG ASP ALA SER PRO SER ILE PHE HIS LEU HIS GLU SEQRES 6 A 223 HIS LEU GLU ASP LEU GLN LYS PRO VAL SER THR ILE MET SEQRES 7 A 223 LYS THR ASP LEU ILE VAL GLY HIS PRO LEU ASP PHE VAL SEQRES 8 A 223 GLU GLU VAL ALA ALA LEU PHE TYR GLU HIS ARG ILE GLY SEQRES 9 A 223 CYS LEU PRO ILE VAL ASN HIS GLY LYS LEU VAL GLY ILE SEQRES 10 A 223 ILE THR GLN THR ASP LEU LEU ARG THR PHE ILE GLU LEU SEQRES 11 A 223 THR GLY VAL HIS GLN PRO GLY SER GLN ILE GLU ILE LYS SEQRES 12 A 223 VAL PRO ASN GLU ALA GLY MET LEU SER LYS ALA ALA ALA SEQRES 13 A 223 ILE ILE SER GLU ARG HIS VAL ASN ILE ALA SER VAL LEU SEQRES 14 A 223 VAL TYR PRO ALA PRO ASP PRO ASN GLU LYS ILE LEU VAL SEQRES 15 A 223 PHE ARG VAL GLN THR MET ASN PRO LEU PRO LEU ILE ARG SEQRES 16 A 223 ASP LEU GLN ASN ALA GLY TYR HIS VAL LEU TRP PRO ASN SEQRES 17 A 223 LEU PRO GLY VAL THR SER GLY SER SER HIS HIS HIS HIS SEQRES 18 A 223 HIS HIS SEQRES 1 B 223 ALA LEU VAL GLU GLN ALA MET LYS ALA PRO VAL ILE THR SEQRES 2 B 223 LEU ARG ALA THR ASN THR ILE ALA GLU ALA LEU GLN LEU SEQRES 3 B 223 LEU ARG HIS HIS ARG ILE ARG HIS LEU PRO VAL VAL ASP SEQRES 4 B 223 GLY GLU GLY ARG LEU LEU GLY LEU VAL THR SER GLN ASP SEQRES 5 B 223 LEU ARG ASP ALA SER PRO SER ILE PHE HIS LEU HIS GLU SEQRES 6 B 223 HIS LEU GLU ASP LEU GLN LYS PRO VAL SER THR ILE MET SEQRES 7 B 223 LYS THR ASP LEU ILE VAL GLY HIS PRO LEU ASP PHE VAL SEQRES 8 B 223 GLU GLU VAL ALA ALA LEU PHE TYR GLU HIS ARG ILE GLY SEQRES 9 B 223 CYS LEU PRO ILE VAL ASN HIS GLY LYS LEU VAL GLY ILE SEQRES 10 B 223 ILE THR GLN THR ASP LEU LEU ARG THR PHE ILE GLU LEU SEQRES 11 B 223 THR GLY VAL HIS GLN PRO GLY SER GLN ILE GLU ILE LYS SEQRES 12 B 223 VAL PRO ASN GLU ALA GLY MET LEU SER LYS ALA ALA ALA SEQRES 13 B 223 ILE ILE SER GLU ARG HIS VAL ASN ILE ALA SER VAL LEU SEQRES 14 B 223 VAL TYR PRO ALA PRO ASP PRO ASN GLU LYS ILE LEU VAL SEQRES 15 B 223 PHE ARG VAL GLN THR MET ASN PRO LEU PRO LEU ILE ARG SEQRES 16 B 223 ASP LEU GLN ASN ALA GLY TYR HIS VAL LEU TRP PRO ASN SEQRES 17 B 223 LEU PRO GLY VAL THR SER GLY SER SER HIS HIS HIS HIS SEQRES 18 B 223 HIS HIS HET AMP A 301 35 HET AMP A 302 35 HET PEG A 303 17 HET CL A 304 1 HET AMP B 301 35 HET AMP B 302 35 HET PEG B 303 17 HET CL B 304 1 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM CL CHLORIDE ION FORMUL 3 AMP 4(C10 H14 N5 O7 P) FORMUL 5 PEG 2(C4 H10 O3) FORMUL 6 CL 2(CL 1-) FORMUL 11 HOH *53(H2 O) HELIX 1 AA1 LEU A 3 MET A 8 1 6 HELIX 2 AA2 THR A 20 ARG A 32 1 13 HELIX 3 AA3 SER A 51 ASP A 56 1 6 HELIX 4 AA4 HIS A 63 GLN A 72 1 10 HELIX 5 AA5 LYS A 73 ILE A 78 5 6 HELIX 6 AA6 PHE A 91 ARG A 103 1 13 HELIX 7 AA7 GLN A 121 THR A 132 1 12 HELIX 8 AA8 GLY A 150 GLU A 161 1 12 HELIX 9 AA9 PRO A 191 ALA A 201 1 11 HELIX 10 AB1 LEU B 3 MET B 8 1 6 HELIX 11 AB2 THR B 20 ARG B 32 1 13 HELIX 12 AB3 SER B 51 ASP B 56 1 6 HELIX 13 AB4 GLU B 69 LYS B 73 5 5 HELIX 14 AB5 PRO B 74 ILE B 78 5 5 HELIX 15 AB6 PHE B 91 ARG B 103 1 13 HELIX 16 AB7 GLN B 121 THR B 132 1 12 HELIX 17 AB8 GLY B 150 GLU B 161 1 12 HELIX 18 AB9 PRO B 191 ALA B 201 1 11 SHEET 1 AA1 3 LEU A 15 ARG A 16 0 SHEET 2 AA1 3 HIS A 35 VAL A 39 1 O VAL A 39 N LEU A 15 SHEET 3 AA1 3 LEU A 45 THR A 50 -1 O LEU A 46 N VAL A 38 SHEET 1 AA2 2 CYS A 106 ASN A 111 0 SHEET 2 AA2 2 LYS A 114 THR A 120 -1 O VAL A 116 N ILE A 109 SHEET 1 AA3 4 ILE A 166 PRO A 173 0 SHEET 2 AA3 4 GLU A 179 VAL A 186 -1 O VAL A 183 N LEU A 170 SHEET 3 AA3 4 SER A 139 PRO A 146 -1 N ILE A 143 O LEU A 182 SHEET 4 AA3 4 HIS A 204 VAL A 205 -1 O HIS A 204 N LYS A 144 SHEET 1 AA4 3 LEU B 15 ARG B 16 0 SHEET 2 AA4 3 HIS B 35 VAL B 39 1 O VAL B 39 N LEU B 15 SHEET 3 AA4 3 LEU B 45 THR B 50 -1 O LEU B 46 N VAL B 38 SHEET 1 AA5 2 CYS B 106 VAL B 110 0 SHEET 2 AA5 2 LEU B 115 THR B 120 -1 O VAL B 116 N ILE B 109 SHEET 1 AA6 4 ILE B 166 PRO B 173 0 SHEET 2 AA6 4 GLU B 179 VAL B 186 -1 O VAL B 183 N LEU B 170 SHEET 3 AA6 4 SER B 139 PRO B 146 -1 N ILE B 143 O LEU B 182 SHEET 4 AA6 4 HIS B 204 VAL B 205 -1 O HIS B 204 N LYS B 144 CISPEP 1 ALA A 10 PRO A 11 0 -4.67 CISPEP 2 ALA B 10 PRO B 11 0 -6.25 CRYST1 52.686 96.414 101.867 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018980 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010372 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009817 0.00000 CONECT 6514 6515 6516 6517 6518 CONECT 6515 6514 CONECT 6516 6514 CONECT 6517 6514 CONECT 6518 6514 6519 CONECT 6519 6518 6520 6537 6538 CONECT 6520 6519 6521 6522 6539 CONECT 6521 6520 6526 CONECT 6522 6520 6523 6524 6540 CONECT 6523 6522 6541 CONECT 6524 6522 6525 6526 6542 CONECT 6525 6524 6543 CONECT 6526 6521 6524 6527 6544 CONECT 6527 6526 6528 6536 CONECT 6528 6527 6529 6545 CONECT 6529 6528 6530 CONECT 6530 6529 6531 6536 CONECT 6531 6530 6532 6533 CONECT 6532 6531 6546 6547 CONECT 6533 6531 6534 CONECT 6534 6533 6535 6548 CONECT 6535 6534 6536 CONECT 6536 6527 6530 6535 CONECT 6537 6519 CONECT 6538 6519 CONECT 6539 6520 CONECT 6540 6522 CONECT 6541 6523 CONECT 6542 6524 CONECT 6543 6525 CONECT 6544 6526 CONECT 6545 6528 CONECT 6546 6532 CONECT 6547 6532 CONECT 6548 6534 CONECT 6549 6550 6551 6552 6553 CONECT 6550 6549 CONECT 6551 6549 CONECT 6552 6549 CONECT 6553 6549 6554 CONECT 6554 6553 6555 6572 6573 CONECT 6555 6554 6556 6557 6574 CONECT 6556 6555 6561 CONECT 6557 6555 6558 6559 6575 CONECT 6558 6557 6576 CONECT 6559 6557 6560 6561 6577 CONECT 6560 6559 6578 CONECT 6561 6556 6559 6562 6579 CONECT 6562 6561 6563 6571 CONECT 6563 6562 6564 6580 CONECT 6564 6563 6565 CONECT 6565 6564 6566 6571 CONECT 6566 6565 6567 6568 CONECT 6567 6566 6581 6582 CONECT 6568 6566 6569 CONECT 6569 6568 6570 6583 CONECT 6570 6569 6571 CONECT 6571 6562 6565 6570 CONECT 6572 6554 CONECT 6573 6554 CONECT 6574 6555 CONECT 6575 6557 CONECT 6576 6558 CONECT 6577 6559 CONECT 6578 6560 CONECT 6579 6561 CONECT 6580 6563 CONECT 6581 6567 CONECT 6582 6567 CONECT 6583 6569 CONECT 6584 6585 6586 6591 6592 CONECT 6585 6584 6593 CONECT 6586 6584 6587 6594 6595 CONECT 6587 6586 6588 CONECT 6588 6587 6589 6596 6597 CONECT 6589 6588 6590 6598 6599 CONECT 6590 6589 6600 CONECT 6591 6584 CONECT 6592 6584 CONECT 6593 6585 CONECT 6594 6586 CONECT 6595 6586 CONECT 6596 6588 CONECT 6597 6588 CONECT 6598 6589 CONECT 6599 6589 CONECT 6600 6590 CONECT 6602 6603 6604 6605 6606 CONECT 6603 6602 CONECT 6604 6602 CONECT 6605 6602 CONECT 6606 6602 6607 CONECT 6607 6606 6608 6625 6626 CONECT 6608 6607 6609 6610 6627 CONECT 6609 6608 6614 CONECT 6610 6608 6611 6612 6628 CONECT 6611 6610 6629 CONECT 6612 6610 6613 6614 6630 CONECT 6613 6612 6631 CONECT 6614 6609 6612 6615 6632 CONECT 6615 6614 6616 6624 CONECT 6616 6615 6617 6633 CONECT 6617 6616 6618 CONECT 6618 6617 6619 6624 CONECT 6619 6618 6620 6621 CONECT 6620 6619 6634 6635 CONECT 6621 6619 6622 CONECT 6622 6621 6623 6636 CONECT 6623 6622 6624 CONECT 6624 6615 6618 6623 CONECT 6625 6607 CONECT 6626 6607 CONECT 6627 6608 CONECT 6628 6610 CONECT 6629 6611 CONECT 6630 6612 CONECT 6631 6613 CONECT 6632 6614 CONECT 6633 6616 CONECT 6634 6620 CONECT 6635 6620 CONECT 6636 6622 CONECT 6637 6638 6639 6640 6641 CONECT 6638 6637 CONECT 6639 6637 CONECT 6640 6637 CONECT 6641 6637 6642 CONECT 6642 6641 6643 6660 6661 CONECT 6643 6642 6644 6645 6662 CONECT 6644 6643 6649 CONECT 6645 6643 6646 6647 6663 CONECT 6646 6645 6664 CONECT 6647 6645 6648 6649 6665 CONECT 6648 6647 6666 CONECT 6649 6644 6647 6650 6667 CONECT 6650 6649 6651 6659 CONECT 6651 6650 6652 6668 CONECT 6652 6651 6653 CONECT 6653 6652 6654 6659 CONECT 6654 6653 6655 6656 CONECT 6655 6654 6669 6670 CONECT 6656 6654 6657 CONECT 6657 6656 6658 6671 CONECT 6658 6657 6659 CONECT 6659 6650 6653 6658 CONECT 6660 6642 CONECT 6661 6642 CONECT 6662 6643 CONECT 6663 6645 CONECT 6664 6646 CONECT 6665 6647 CONECT 6666 6648 CONECT 6667 6649 CONECT 6668 6651 CONECT 6669 6655 CONECT 6670 6655 CONECT 6671 6657 CONECT 6672 6673 6674 6679 6680 CONECT 6673 6672 6681 CONECT 6674 6672 6675 6682 6683 CONECT 6675 6674 6676 CONECT 6676 6675 6677 6684 6685 CONECT 6677 6676 6678 6686 6687 CONECT 6678 6677 6688 CONECT 6679 6672 CONECT 6680 6672 CONECT 6681 6673 CONECT 6682 6674 CONECT 6683 6674 CONECT 6684 6676 CONECT 6685 6676 CONECT 6686 6677 CONECT 6687 6677 CONECT 6688 6678 MASTER 396 0 8 18 18 0 0 6 3341 2 174 36 END