HEADER STRUCTURAL PROTEIN 31-JUL-25 9S6D TITLE THE ROLE OF LLPS IN YEAST CLATHRIN-MEDIATED ENDOCYTOSIS AND TITLE 2 TRAFFICKING COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLATHRIN HEAVY CHAIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ILE-ASP-ASP-LEU-LEU-ASP-TRP-ASP-GLY-PRO; COMPND 7 CHAIN: C, D, E, F, G, H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES; SOURCE 3 ORGANISM_TAXID: 4930; SOURCE 4 GENE: CHC1, YGL206C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SACCHAROMYCES; SOURCE 10 ORGANISM_TAXID: 4930 KEYWDS ENDOCYTOSIS, TRAFFICKING, CLATHRIN, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.RUIZ-CARRILLO,M.GARCIA-ALAI,L.DEFELIPE REVDAT 1 12-AUG-26 9S6D 0 JRNL AUTH G.DRAPPER-BARR,J.SCHILLER,K.VEITH,S.NIEBLING, JRNL AUTH 2 D.RUIZ-CARRILLO,Z.HUANG,C.TISHER,R.THUENAUER,L.A.DEFELIPE, JRNL AUTH 3 M.GARCIA-ALAI JRNL TITL THE ROLE OF LLPS IN YEAST CLATHRIN-MEDIATED ENDOCYTOSIS AND JRNL TITL 2 TRAFFICKING JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 (REFMACAT 0.4.105) REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 97212 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4861 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6739 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.3420 REMARK 3 BIN FREE R VALUE SET COUNT : 355 REMARK 3 BIN FREE R VALUE : 0.3610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6074 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 391 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.94100 REMARK 3 B22 (A**2) : 1.18700 REMARK 3 B33 (A**2) : -0.31300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.32100 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.095 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.096 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.520 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6192 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 5926 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8427 ; 1.775 ; 1.785 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13588 ; 0.602 ; 1.747 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 769 ; 7.135 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 28 ; 6.241 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1035 ;13.014 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 997 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7303 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1421 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 994 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 111 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2966 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 333 ; 0.158 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3100 ; 3.978 ; 3.897 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3100 ; 3.957 ; 3.898 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3861 ; 5.420 ; 6.958 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3862 ; 5.419 ; 6.960 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3092 ; 4.919 ; 4.456 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3092 ; 4.917 ; 4.456 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4566 ; 7.379 ; 7.959 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4567 ; 7.378 ; 7.960 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9S6D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1292149253. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 97212 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 48.886 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.07639 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.21000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM POTASSIUM TARTRATE, TRIS REMARK 280 BUFFER, PEG 5000MME, VAPOR DIFFUSION, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 48.17050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.94050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 48.17050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 64.94050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 413 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP C 11 REMARK 465 GLY C 12 REMARK 465 PRO C 13 REMARK 465 ASP D 17 REMARK 465 GLY D 18 REMARK 465 PRO D 19 REMARK 465 ILE E 8 REMARK 465 ASP E 15 REMARK 465 GLY E 16 REMARK 465 PRO E 17 REMARK 465 ILE F 7 REMARK 465 ASP F 8 REMARK 465 ASP F 9 REMARK 465 ASP F 14 REMARK 465 GLY F 15 REMARK 465 PRO F 16 REMARK 465 ILE G 5 REMARK 465 ASP G 6 REMARK 465 GLY G 13 REMARK 465 PRO G 14 REMARK 465 ILE H 4 REMARK 465 ASP H 5 REMARK 465 ASP H 11 REMARK 465 GLY H 12 REMARK 465 PRO H 13 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 454 O HOH G 102 2.16 REMARK 500 OD2 ASP B 3 O HOH B 401 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 179 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 112 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 16 0.10 -68.19 REMARK 500 SER A 75 -21.19 -140.21 REMARK 500 ASN A 84 -3.99 81.32 REMARK 500 LYS A 96 73.79 45.43 REMARK 500 ASN A 316 64.31 62.78 REMARK 500 ASP B 44 54.14 39.80 REMARK 500 MET B 65 138.89 -175.16 REMARK 500 SER B 75 -32.07 -131.48 REMARK 500 LYS B 96 -3.05 68.35 REMARK 500 ALA B 262 52.96 -115.81 REMARK 500 ASN B 316 74.40 61.76 REMARK 500 ASP C 9 -169.79 -65.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 235 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 597 DISTANCE = 6.89 ANGSTROMS DBREF 9S6D A 1 369 UNP P22137 CLH_YEAST 1 369 DBREF 9S6D B 1 369 UNP P22137 CLH_YEAST 1 369 DBREF 9S6D C 4 13 PDB 9S6D 9S6D 4 13 DBREF 9S6D D 10 19 PDB 9S6D 9S6D 10 19 DBREF 9S6D E 8 17 PDB 9S6D 9S6D 8 17 DBREF 9S6D F 7 16 PDB 9S6D 9S6D 7 16 DBREF 9S6D G 5 14 PDB 9S6D 9S6D 5 14 DBREF 9S6D H 4 13 PDB 9S6D 9S6D 4 13 SEQADV 9S6D MET A -1 UNP P22137 INITIATING METHIONINE SEQADV 9S6D ALA A 0 UNP P22137 EXPRESSION TAG SEQADV 9S6D MET B -1 UNP P22137 INITIATING METHIONINE SEQADV 9S6D ALA B 0 UNP P22137 EXPRESSION TAG SEQRES 1 A 371 MET ALA MET SER ASP LEU PRO ILE GLU PHE THR GLU LEU SEQRES 2 A 371 VAL ASP LEU MET SER LEU GLY ILE SER PRO GLN PHE LEU SEQRES 3 A 371 ASP PHE ARG SER THR THR PHE GLU SER ASP HIS PHE VAL SEQRES 4 A 371 THR VAL ARG GLU THR LYS ASP GLY THR ASN SER VAL ALA SEQRES 5 A 371 ILE VAL ASP LEU ALA LYS GLY ASN GLU VAL THR ARG LYS SEQRES 6 A 371 ASN MET GLY GLY ASP SER ALA ILE MET HIS PRO SER GLN SEQRES 7 A 371 MET VAL ILE SER VAL ARG ALA ASN GLY THR ILE VAL GLN SEQRES 8 A 371 ILE PHE ASN LEU GLU THR LYS SER LYS LEU LYS SER PHE SEQRES 9 A 371 THR LEU ASP GLU PRO VAL ILE PHE TRP ARG TRP LEU SER SEQRES 10 A 371 GLU THR THR LEU GLY PHE VAL THR ALA ARG SER ILE LEU SEQRES 11 A 371 THR SER ASN VAL PHE ASP GLY ASN VAL ASN ALA LYS PRO SEQRES 12 A 371 GLN LEU LEU THR LEU ARG HIS ALA ASN LEU ASN ASN THR SEQRES 13 A 371 GLN ILE ILE ASN PHE VAL ALA ASN LYS ASN LEU ASP TRP SEQRES 14 A 371 PHE ALA VAL VAL GLY ILE LEU GLN GLU ASN GLY ARG ILE SEQRES 15 A 371 ALA GLY ARG ILE GLN LEU PHE SER LYS GLN ARG ASN ILE SEQRES 16 A 371 SER GLN ALA ILE ASP GLY HIS VAL ALA ILE PHE THR ASN SEQRES 17 A 371 ILE LEU LEU GLU GLY ASN GLY SER THR PRO VAL GLN VAL SEQRES 18 A 371 PHE VAL THR GLY ASN ARG ASN ALA THR THR GLY ALA GLY SEQRES 19 A 371 GLU LEU ARG ILE ILE GLU ILE ASP HIS ASP ALA SER LEU SEQRES 20 A 371 PRO SER GLN TYR GLN LYS GLU THR THR ASP ILE PHE PHE SEQRES 21 A 371 PRO PRO ASP ALA THR ASN ASP PHE PRO ILE ALA VAL GLN SEQRES 22 A 371 VAL SER GLU LYS TYR GLY ILE ILE TYR LEU LEU THR LYS SEQRES 23 A 371 TYR GLY PHE ILE HIS LEU TYR GLU LEU GLU THR GLY THR SEQRES 24 A 371 ASN LEU PHE VAL ASN ARG ILE THR ALA GLU SER VAL PHE SEQRES 25 A 371 THR ALA ALA PRO TYR ASN HIS GLU ASN GLY ILE ALA CYS SEQRES 26 A 371 ILE ASN LYS LYS GLY GLN VAL LEU ALA VAL GLU ILE SER SEQRES 27 A 371 THR SER GLN ILE VAL PRO TYR ILE LEU ASN LYS LEU SER SEQRES 28 A 371 ASN VAL ALA LEU ALA LEU ILE VAL ALA THR ARG GLY GLY SEQRES 29 A 371 LEU PRO GLY ALA ASP ASP LEU SEQRES 1 B 371 MET ALA MET SER ASP LEU PRO ILE GLU PHE THR GLU LEU SEQRES 2 B 371 VAL ASP LEU MET SER LEU GLY ILE SER PRO GLN PHE LEU SEQRES 3 B 371 ASP PHE ARG SER THR THR PHE GLU SER ASP HIS PHE VAL SEQRES 4 B 371 THR VAL ARG GLU THR LYS ASP GLY THR ASN SER VAL ALA SEQRES 5 B 371 ILE VAL ASP LEU ALA LYS GLY ASN GLU VAL THR ARG LYS SEQRES 6 B 371 ASN MET GLY GLY ASP SER ALA ILE MET HIS PRO SER GLN SEQRES 7 B 371 MET VAL ILE SER VAL ARG ALA ASN GLY THR ILE VAL GLN SEQRES 8 B 371 ILE PHE ASN LEU GLU THR LYS SER LYS LEU LYS SER PHE SEQRES 9 B 371 THR LEU ASP GLU PRO VAL ILE PHE TRP ARG TRP LEU SER SEQRES 10 B 371 GLU THR THR LEU GLY PHE VAL THR ALA ARG SER ILE LEU SEQRES 11 B 371 THR SER ASN VAL PHE ASP GLY ASN VAL ASN ALA LYS PRO SEQRES 12 B 371 GLN LEU LEU THR LEU ARG HIS ALA ASN LEU ASN ASN THR SEQRES 13 B 371 GLN ILE ILE ASN PHE VAL ALA ASN LYS ASN LEU ASP TRP SEQRES 14 B 371 PHE ALA VAL VAL GLY ILE LEU GLN GLU ASN GLY ARG ILE SEQRES 15 B 371 ALA GLY ARG ILE GLN LEU PHE SER LYS GLN ARG ASN ILE SEQRES 16 B 371 SER GLN ALA ILE ASP GLY HIS VAL ALA ILE PHE THR ASN SEQRES 17 B 371 ILE LEU LEU GLU GLY ASN GLY SER THR PRO VAL GLN VAL SEQRES 18 B 371 PHE VAL THR GLY ASN ARG ASN ALA THR THR GLY ALA GLY SEQRES 19 B 371 GLU LEU ARG ILE ILE GLU ILE ASP HIS ASP ALA SER LEU SEQRES 20 B 371 PRO SER GLN TYR GLN LYS GLU THR THR ASP ILE PHE PHE SEQRES 21 B 371 PRO PRO ASP ALA THR ASN ASP PHE PRO ILE ALA VAL GLN SEQRES 22 B 371 VAL SER GLU LYS TYR GLY ILE ILE TYR LEU LEU THR LYS SEQRES 23 B 371 TYR GLY PHE ILE HIS LEU TYR GLU LEU GLU THR GLY THR SEQRES 24 B 371 ASN LEU PHE VAL ASN ARG ILE THR ALA GLU SER VAL PHE SEQRES 25 B 371 THR ALA ALA PRO TYR ASN HIS GLU ASN GLY ILE ALA CYS SEQRES 26 B 371 ILE ASN LYS LYS GLY GLN VAL LEU ALA VAL GLU ILE SER SEQRES 27 B 371 THR SER GLN ILE VAL PRO TYR ILE LEU ASN LYS LEU SER SEQRES 28 B 371 ASN VAL ALA LEU ALA LEU ILE VAL ALA THR ARG GLY GLY SEQRES 29 B 371 LEU PRO GLY ALA ASP ASP LEU SEQRES 1 C 10 ILE ASP ASP LEU LEU ASP TRP ASP GLY PRO SEQRES 1 D 10 ILE ASP ASP LEU LEU ASP TRP ASP GLY PRO SEQRES 1 E 10 ILE ASP ASP LEU LEU ASP TRP ASP GLY PRO SEQRES 1 F 10 ILE ASP ASP LEU LEU ASP TRP ASP GLY PRO SEQRES 1 G 10 ILE ASP ASP LEU LEU ASP TRP ASP GLY PRO SEQRES 1 H 10 ILE ASP ASP LEU LEU ASP TRP ASP GLY PRO FORMUL 9 HOH *391(H2 O) HELIX 1 AA1 ALA A 0 LEU A 4 5 5 HELIX 2 AA2 MET A 15 GLY A 18 5 4 HELIX 3 AA3 SER A 20 LEU A 24 5 5 HELIX 4 AA4 HIS A 148 ASN A 152 5 5 HELIX 5 AA5 GLN A 339 LEU A 348 1 10 HELIX 6 AA6 ASN A 350 GLY A 362 1 13 HELIX 7 AA7 ALA B 0 LEU B 4 5 5 HELIX 8 AA8 MET B 15 GLY B 18 5 4 HELIX 9 AA9 SER B 20 LEU B 24 5 5 HELIX 10 AB1 HIS B 148 ASN B 152 5 5 HELIX 11 AB2 GLN B 339 LYS B 347 1 9 HELIX 12 AB3 ASN B 350 GLY B 362 1 13 HELIX 13 AB4 ASP G 7 TRP G 11 5 5 SHEET 1 AA1 4 ILE A 6 ASP A 13 0 SHEET 2 AA1 4 GLN A 329 ILE A 335 -1 O VAL A 330 N LEU A 11 SHEET 3 AA1 4 GLY A 320 ASN A 325 -1 N CYS A 323 O LEU A 331 SHEET 4 AA1 4 VAL A 309 TYR A 315 -1 N ALA A 313 O ALA A 322 SHEET 1 AA2 4 THR A 29 SER A 33 0 SHEET 2 AA2 4 PHE A 36 THR A 42 -1 O THR A 38 N THR A 30 SHEET 3 AA2 4 ASN A 47 ASP A 53 -1 O ALA A 50 N VAL A 39 SHEET 4 AA2 4 VAL A 60 ASN A 64 -1 O THR A 61 N ILE A 51 SHEET 1 AA3 4 SER A 69 MET A 72 0 SHEET 2 AA3 4 VAL A 78 ALA A 83 -1 O SER A 80 N ILE A 71 SHEET 3 AA3 4 ILE A 87 ASN A 92 -1 O GLN A 89 N VAL A 81 SHEET 4 AA3 4 SER A 97 THR A 103 -1 O SER A 97 N ASN A 92 SHEET 1 AA4 4 VAL A 108 TRP A 113 0 SHEET 2 AA4 4 THR A 118 THR A 123 -1 O GLY A 120 N ARG A 112 SHEET 3 AA4 4 SER A 126 ASN A 131 -1 O SER A 126 N THR A 123 SHEET 4 AA4 4 GLN A 142 LEU A 146 -1 O LEU A 144 N ILE A 127 SHEET 1 AA5 4 GLN A 155 ALA A 161 0 SHEET 2 AA5 4 TRP A 167 GLU A 176 -1 O ILE A 173 N GLN A 155 SHEET 3 AA5 4 ARG A 179 SER A 188 -1 O ARG A 183 N GLY A 172 SHEET 4 AA5 4 ILE A 193 ASP A 198 -1 O ILE A 197 N ILE A 184 SHEET 1 AA6 4 VAL A 201 ILE A 207 0 SHEET 2 AA6 4 VAL A 217 ARG A 225 -1 O VAL A 219 N THR A 205 SHEET 3 AA6 4 GLY A 232 ILE A 239 -1 O ARG A 235 N THR A 222 SHEET 4 AA6 4 GLU A 252 ASP A 255 -1 O THR A 254 N LEU A 234 SHEET 1 AA7 4 PRO A 267 SER A 273 0 SHEET 2 AA7 4 ILE A 278 THR A 283 -1 O TYR A 280 N GLN A 271 SHEET 3 AA7 4 PHE A 287 GLU A 292 -1 O TYR A 291 N ILE A 279 SHEET 4 AA7 4 ASN A 298 ARG A 303 -1 O PHE A 300 N LEU A 290 SHEET 1 AA8 4 ILE B 6 ASP B 13 0 SHEET 2 AA8 4 GLN B 329 ILE B 335 -1 O VAL B 330 N LEU B 11 SHEET 3 AA8 4 GLY B 320 ASN B 325 -1 N CYS B 323 O LEU B 331 SHEET 4 AA8 4 VAL B 309 TYR B 315 -1 N ALA B 313 O ALA B 322 SHEET 1 AA9 4 THR B 29 SER B 33 0 SHEET 2 AA9 4 PHE B 36 THR B 42 -1 O THR B 38 N THR B 30 SHEET 3 AA9 4 ASN B 47 ASP B 53 -1 O SER B 48 N GLU B 41 SHEET 4 AA9 4 VAL B 60 ASN B 64 -1 O LYS B 63 N VAL B 49 SHEET 1 AB1 4 SER B 69 MET B 72 0 SHEET 2 AB1 4 VAL B 78 ALA B 83 -1 O SER B 80 N ILE B 71 SHEET 3 AB1 4 ILE B 87 ASN B 92 -1 O GLN B 89 N VAL B 81 SHEET 4 AB1 4 LYS B 98 THR B 103 -1 O PHE B 102 N VAL B 88 SHEET 1 AB2 4 VAL B 108 TRP B 113 0 SHEET 2 AB2 4 THR B 118 THR B 123 -1 O GLY B 120 N ARG B 112 SHEET 3 AB2 4 SER B 126 ASN B 131 -1 O SER B 130 N LEU B 119 SHEET 4 AB2 4 GLN B 142 LEU B 146 -1 O LEU B 144 N ILE B 127 SHEET 1 AB3 4 GLN B 155 ALA B 161 0 SHEET 2 AB3 4 TRP B 167 GLU B 176 -1 O VAL B 171 N ILE B 157 SHEET 3 AB3 4 ARG B 179 SER B 188 -1 O ALA B 181 N LEU B 174 SHEET 4 AB3 4 ILE B 193 ASP B 198 -1 O GLN B 195 N LEU B 186 SHEET 1 AB4 4 VAL B 201 ILE B 207 0 SHEET 2 AB4 4 VAL B 217 ARG B 225 -1 O VAL B 219 N THR B 205 SHEET 3 AB4 4 GLY B 232 ILE B 239 -1 O GLU B 233 N ASN B 224 SHEET 4 AB4 4 GLU B 252 ILE B 256 -1 O THR B 254 N LEU B 234 SHEET 1 AB5 4 PRO B 267 SER B 273 0 SHEET 2 AB5 4 ILE B 278 THR B 283 -1 O TYR B 280 N GLN B 271 SHEET 3 AB5 4 PHE B 287 GLU B 292 -1 O TYR B 291 N ILE B 279 SHEET 4 AB5 4 THR B 297 ARG B 303 -1 O LEU B 299 N LEU B 290 CRYST1 96.341 129.881 74.532 90.00 96.67 90.00 C 1 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010380 0.000000 0.001214 0.00000 SCALE2 0.000000 0.007699 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013509 0.00000 MASTER 369 0 0 13 56 0 0 6 6465 8 0 64 END