data_9S6I # _entry.id 9S6I # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.406 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9S6I pdb_00009s6i 10.2210/pdb9s6i/pdb WWPDB D_1292149664 ? ? BMRB 35010 ? 10.13018/BMR35010 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-10-15 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 9S6I _pdbx_database_status.recvd_initial_deposition_date 2025-08-01 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs . _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details ;Structure of a 2'F-RNA disubstituted iMotif ; _pdbx_database_related.db_id 35010 _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 3 _pdbx_contact_author.email cgonzalez@iqf.csic.es _pdbx_contact_author.name_first Carlos _pdbx_contact_author.name_last Gonzalez _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-8796-1282 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ugedo, C.' 1 0009-0009-7388-3610 'Dominguez, A.' 2 ? 'Gomez-Pinto, I.' 3 ? 'Eritja, R.' 4 ? 'Avino, A.' 5 ? 'Gonzalez, C.' 6 0000-0001-8796-1282 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country CH _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Molecules _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1420-3049 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 30 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;The Effect of 2'F-RNA on I-Motif Structure and Stability. ; _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.3390/molecules30173561 _citation.pdbx_database_id_PubMed 40942089 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ugedo, C.' 1 0009-0009-7388-3610 primary 'Dominguez, A.' 2 0000-0002-4336-9209 primary 'Gomez-Pinto, I.' 3 ? primary 'Eritja, R.' 4 0000-0001-5383-9334 primary 'Gonzalez, C.' 5 0000-0001-8796-1282 primary 'Avino, A.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*CP*CP*(CFZ)P*(CFZ)P*C)-3') ; 1741.126 2 ? ? ? ;TCCCCC homotetramer with 2'F-RNA substitution of C4 and C5. All cytosine pairs hemiprotonated. ; 2 polymer syn ;DNA (5'-D(*TP*(DNR)P*(DNR)P*(CFZ)P*(CFZ)P*(DNR))-3') ; 1744.150 2 ? ? ? ;TCCCCC homotetramer with 2'F-RNA substitution of C4 and C5. All cytosine pairs hemiprotonated. ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DT)(DC)(DC)(CFZ)(CFZ)(DC)' TCCXXC A,B ? 2 polydeoxyribonucleotide no yes '(DT)(DNR)(DNR)(CFZ)(CFZ)(DNR)' TCCXXC C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DC n 1 3 DC n 1 4 CFZ n 1 5 CFZ n 1 6 DC n 2 1 DT n 2 2 DNR n 2 3 DNR n 2 4 CFZ n 2 5 CFZ n 2 6 DNR n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 6 'synthetic construct' ? 32630 ? 2 1 sample 1 6 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CFZ 'DNA linking' n ;2'-deoxy-2'-fluorocytidine 5'-(dihydrogen phosphate) ; ? 'C9 H13 F N3 O7 P' 325.188 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DNR 'DNA linking' n ;2'-DEOXY-N3-PROTONATED CYTIDINE-5'-MONOPHOSPHATE ; ? 'C9 H15 N3 O7 P 1' 308.205 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 CFZ 4 4 4 CFZ CFZ A . n A 1 5 CFZ 5 5 5 CFZ CFZ A . n A 1 6 DC 6 6 6 DC DC A . n B 1 1 DT 1 1 1 DT DT B . n B 1 2 DC 2 2 2 DC DC B . n B 1 3 DC 3 3 3 DC DC B . n B 1 4 CFZ 4 4 4 CFZ CFZ B . n B 1 5 CFZ 5 5 5 CFZ CFZ B . n B 1 6 DC 6 6 6 DC DC B . n C 2 1 DT 1 1 1 DT DT C . n C 2 2 DNR 2 2 2 DNR DNR C . n C 2 3 DNR 3 3 3 DNR DNR C . n C 2 4 CFZ 4 4 4 CFZ CFZ C . n C 2 5 CFZ 5 5 5 CFZ CFZ C . n C 2 6 DNR 6 6 6 DNR DNR C . n D 2 1 DT 1 1 1 DT DT D . n D 2 2 DNR 2 2 2 DNR DNR D . n D 2 3 DNR 3 3 3 DNR DNR D . n D 2 4 CFZ 4 4 4 CFZ CFZ D . n D 2 5 CFZ 5 5 5 CFZ CFZ D . n D 2 6 DNR 6 6 6 DNR DNR D . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id CFZ _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id CFZ _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9S6I _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 9S6I _struct.title 'A tetrameric i-motif structure formed by dTdCdCfrCfrCdC' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9S6I _struct_keywords.text 'i-motif, XNA, fluorine substitution, DNA-RNA HYBRID' _struct_keywords.pdbx_keywords 'DNA-RNA HYBRID' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 9S6I 9S6I ? 1 ? 1 2 PDB 9S6I 9S6I ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9S6I A 1 ? 6 ? 9S6I 1 ? 6 ? 1 6 2 1 9S6I B 1 ? 6 ? 9S6I 1 ? 6 ? 1 6 3 2 9S6I C 1 ? 6 ? 9S6I 1 ? 6 ? 1 6 4 2 9S6I D 1 ? 6 ? 9S6I 1 ? 6 ? 1 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DC 3 "O3'" ? ? ? 1_555 A CFZ 4 P ? ? A DC 3 A CFZ 4 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale2 covale both ? A CFZ 4 "O3'" ? ? ? 1_555 A CFZ 5 P ? ? A CFZ 4 A CFZ 5 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale3 covale both ? A CFZ 5 "O3'" ? ? ? 1_555 A DC 6 P ? ? A CFZ 5 A DC 6 1_555 ? ? ? ? ? ? ? 1.619 ? ? covale4 covale both ? B DC 3 "O3'" ? ? ? 1_555 B CFZ 4 P ? ? B DC 3 B CFZ 4 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale5 covale both ? B CFZ 4 "O3'" ? ? ? 1_555 B CFZ 5 P ? ? B CFZ 4 B CFZ 5 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale6 covale both ? B CFZ 5 "O3'" ? ? ? 1_555 B DC 6 P ? ? B CFZ 5 B DC 6 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale7 covale both ? C DT 1 "O3'" ? ? ? 1_555 C DNR 2 P ? ? C DT 1 C DNR 2 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale8 covale both ? C DNR 2 "O3'" ? ? ? 1_555 C DNR 3 P ? ? C DNR 2 C DNR 3 1_555 ? ? ? ? ? ? ? 1.626 ? ? covale9 covale both ? C DNR 3 "O3'" ? ? ? 1_555 C CFZ 4 P ? ? C DNR 3 C CFZ 4 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale10 covale both ? C CFZ 4 "O3'" ? ? ? 1_555 C CFZ 5 P ? ? C CFZ 4 C CFZ 5 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale11 covale both ? C CFZ 5 "O3'" ? ? ? 1_555 C DNR 6 P ? ? C CFZ 5 C DNR 6 1_555 ? ? ? ? ? ? ? 1.599 ? ? covale12 covale both ? D DT 1 "O3'" ? ? ? 1_555 D DNR 2 P ? ? D DT 1 D DNR 2 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale13 covale both ? D DNR 2 "O3'" ? ? ? 1_555 D DNR 3 P ? ? D DNR 2 D DNR 3 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale14 covale both ? D DNR 3 "O3'" ? ? ? 1_555 D CFZ 4 P ? ? D DNR 3 D CFZ 4 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale15 covale both ? D CFZ 4 "O3'" ? ? ? 1_555 D CFZ 5 P ? ? D CFZ 4 D CFZ 5 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale16 covale both ? D CFZ 5 "O3'" ? ? ? 1_555 D DNR 6 P ? ? D CFZ 5 D DNR 6 1_555 ? ? ? ? ? ? ? 1.619 ? ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 C DT 1 O4 ? ? A DT 1 C DT 1 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 C DT 1 N3 ? ? A DT 1 C DT 1 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog3 hydrog ? ? A DC 2 N4 ? ? ? 1_555 C DNR 2 O2 ? ? A DC 2 C DNR 2 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog4 hydrog ? ? A DC 2 O2 ? ? ? 1_555 C DNR 2 N4 ? ? A DC 2 C DNR 2 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog5 hydrog ? ? A DC 3 N4 ? ? ? 1_555 C DNR 3 O2 ? ? A DC 3 C DNR 3 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog6 hydrog ? ? A DC 3 O2 ? ? ? 1_555 C DNR 3 N4 ? ? A DC 3 C DNR 3 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog7 hydrog ? ? A CFZ 4 N4 ? ? ? 1_555 C CFZ 4 O2 ? ? A CFZ 4 C CFZ 4 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog8 hydrog ? ? A CFZ 4 O2 ? ? ? 1_555 C CFZ 4 N4 ? ? A CFZ 4 C CFZ 4 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog9 hydrog ? ? A CFZ 5 N4 ? ? ? 1_555 C CFZ 5 O2 ? ? A CFZ 5 C CFZ 5 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog10 hydrog ? ? A CFZ 5 O2 ? ? ? 1_555 C CFZ 5 N4 ? ? A CFZ 5 C CFZ 5 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog11 hydrog ? ? A DC 6 N4 ? ? ? 1_555 C DNR 6 O2 ? ? A DC 6 C DNR 6 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog12 hydrog ? ? A DC 6 O2 ? ? ? 1_555 C DNR 6 N4 ? ? A DC 6 C DNR 6 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog13 hydrog ? ? B DT 1 N3 ? ? ? 1_555 D DT 1 O4 ? ? B DT 1 D DT 1 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog14 hydrog ? ? B DT 1 O4 ? ? ? 1_555 D DT 1 N3 ? ? B DT 1 D DT 1 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog15 hydrog ? ? B DC 2 N4 ? ? ? 1_555 D DNR 2 O2 ? ? B DC 2 D DNR 2 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog16 hydrog ? ? B DC 2 O2 ? ? ? 1_555 D DNR 2 N4 ? ? B DC 2 D DNR 2 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog17 hydrog ? ? B DC 3 N4 ? ? ? 1_555 D DNR 3 O2 ? ? B DC 3 D DNR 3 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog18 hydrog ? ? B DC 3 O2 ? ? ? 1_555 D DNR 3 N4 ? ? B DC 3 D DNR 3 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog19 hydrog ? ? B CFZ 4 N4 ? ? ? 1_555 D CFZ 4 O2 ? ? B CFZ 4 D CFZ 4 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog20 hydrog ? ? B CFZ 4 O2 ? ? ? 1_555 D CFZ 4 N4 ? ? B CFZ 4 D CFZ 4 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog21 hydrog ? ? B CFZ 5 N4 ? ? ? 1_555 D CFZ 5 O2 ? ? B CFZ 5 D CFZ 5 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog22 hydrog ? ? B CFZ 5 O2 ? ? ? 1_555 D CFZ 5 N4 ? ? B CFZ 5 D CFZ 5 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog23 hydrog ? ? B DC 6 N4 ? ? ? 1_555 D DNR 6 O2 ? ? B DC 6 D DNR 6 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog24 hydrog ? ? B DC 6 O2 ? ? ? 1_555 D DNR 6 N4 ? ? B DC 6 D DNR 6 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _pdbx_entry_details.entry_id 9S6I _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 3 _pdbx_validate_close_contact.auth_atom_id_1 "HO5'" _pdbx_validate_close_contact.auth_asym_id_1 D _pdbx_validate_close_contact.auth_comp_id_1 DT _pdbx_validate_close_contact.auth_seq_id_1 1 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OP2 _pdbx_validate_close_contact.auth_asym_id_2 D _pdbx_validate_close_contact.auth_comp_id_2 DNR _pdbx_validate_close_contact.auth_seq_id_2 2 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.54 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 110.43 108.30 2.13 0.30 N 2 1 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 123.33 118.90 4.43 0.60 N 3 1 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 116.08 121.90 -5.82 0.70 N 4 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 111.75 108.30 3.45 0.30 N 5 1 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 123.77 118.90 4.87 0.60 N 6 1 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 115.13 121.90 -6.77 0.70 N 7 1 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.88 118.90 3.98 0.60 N 8 1 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 115.57 121.90 -6.33 0.70 N 9 1 "C4'" B DC 2 ? ? "C3'" B DC 2 ? ? "C2'" B DC 2 ? ? 97.23 102.20 -4.97 0.70 N 10 1 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 111.89 108.30 3.59 0.30 N 11 1 N1 B DC 2 ? ? C2 B DC 2 ? ? O2 B DC 2 ? ? 122.84 118.90 3.94 0.60 N 12 1 N3 B DC 2 ? ? C2 B DC 2 ? ? O2 B DC 2 ? ? 116.39 121.90 -5.51 0.70 N 13 1 "O4'" B DC 3 ? ? "C1'" B DC 3 ? ? N1 B DC 3 ? ? 111.34 108.30 3.04 0.30 N 14 1 N1 B DC 3 ? ? C2 B DC 3 ? ? O2 B DC 3 ? ? 124.05 118.90 5.15 0.60 N 15 1 N3 B DC 3 ? ? C2 B DC 3 ? ? O2 B DC 3 ? ? 114.92 121.90 -6.98 0.70 N 16 1 "O4'" B DC 6 ? ? "C1'" B DC 6 ? ? N1 B DC 6 ? ? 111.12 108.30 2.82 0.30 N 17 1 N1 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 123.37 118.90 4.47 0.60 N 18 1 N3 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 115.31 121.90 -6.59 0.70 N 19 2 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 111.43 108.30 3.13 0.30 N 20 2 "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? "C2'" A DC 2 ? ? 94.56 102.20 -7.64 0.70 N 21 2 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 113.46 108.30 5.16 0.30 N 22 2 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 116.17 121.90 -5.73 0.70 N 23 2 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 112.94 108.30 4.64 0.30 N 24 2 C6 A DC 3 ? ? N1 A DC 3 ? ? C2 A DC 3 ? ? 117.56 120.30 -2.74 0.40 N 25 2 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 123.27 118.90 4.37 0.60 N 26 2 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 115.09 121.90 -6.81 0.70 N 27 2 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.80 108.30 2.50 0.30 N 28 2 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.70 118.90 3.80 0.60 N 29 2 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 115.56 121.90 -6.34 0.70 N 30 2 "O4'" B DT 1 ? ? "C1'" B DT 1 ? ? N1 B DT 1 ? ? 113.10 108.30 4.80 0.30 N 31 2 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 110.72 108.30 2.42 0.30 N 32 2 N1 B DC 2 ? ? C2 B DC 2 ? ? O2 B DC 2 ? ? 122.59 118.90 3.69 0.60 N 33 2 N3 B DC 2 ? ? C2 B DC 2 ? ? O2 B DC 2 ? ? 116.30 121.90 -5.60 0.70 N 34 2 "O4'" B DC 3 ? ? "C1'" B DC 3 ? ? N1 B DC 3 ? ? 112.14 108.30 3.84 0.30 N 35 2 N1 B DC 3 ? ? C2 B DC 3 ? ? O2 B DC 3 ? ? 123.50 118.90 4.60 0.60 N 36 2 N3 B DC 3 ? ? C2 B DC 3 ? ? O2 B DC 3 ? ? 115.17 121.90 -6.73 0.70 N 37 2 "O4'" B DC 6 ? ? "C1'" B DC 6 ? ? N1 B DC 6 ? ? 110.11 108.30 1.81 0.30 N 38 2 N3 B DC 6 ? ? C4 B DC 6 ? ? C5 B DC 6 ? ? 124.56 121.90 2.66 0.40 N 39 2 N1 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 123.71 118.90 4.81 0.60 N 40 2 N3 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 115.48 121.90 -6.42 0.70 N 41 3 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 114.29 108.30 5.99 0.30 N 42 3 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 123.58 118.90 4.68 0.60 N 43 3 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 116.16 121.90 -5.74 0.70 N 44 3 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 111.03 108.30 2.73 0.30 N 45 3 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 122.93 118.90 4.03 0.60 N 46 3 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 115.96 121.90 -5.94 0.70 N 47 3 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.33 108.30 3.03 0.30 N 48 3 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 115.95 121.90 -5.95 0.70 N 49 3 N3 B DC 2 ? ? C2 B DC 2 ? ? O2 B DC 2 ? ? 116.24 121.90 -5.66 0.70 N 50 3 "C4'" B DC 3 ? ? "C3'" B DC 3 ? ? "C2'" B DC 3 ? ? 97.77 102.20 -4.43 0.70 N 51 3 "O4'" B DC 3 ? ? "C1'" B DC 3 ? ? N1 B DC 3 ? ? 110.76 108.30 2.46 0.30 N 52 3 N1 B DC 3 ? ? C2 B DC 3 ? ? O2 B DC 3 ? ? 123.68 118.90 4.78 0.60 N 53 3 N3 B DC 3 ? ? C2 B DC 3 ? ? O2 B DC 3 ? ? 115.33 121.90 -6.57 0.70 N 54 3 "O4'" B DC 6 ? ? "C1'" B DC 6 ? ? N1 B DC 6 ? ? 110.67 108.30 2.37 0.30 N 55 3 N1 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 123.55 118.90 4.65 0.60 N 56 3 N3 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 115.31 121.90 -6.59 0.70 N 57 4 "C3'" A DT 1 ? ? "C2'" A DT 1 ? ? "C1'" A DT 1 ? ? 97.12 102.40 -5.28 0.80 N 58 4 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 112.13 108.30 3.83 0.30 N 59 4 "O5'" A DC 2 ? ? "C5'" A DC 2 ? ? "C4'" A DC 2 ? ? 103.67 109.40 -5.73 0.80 N 60 4 "O4'" A DC 2 ? ? "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? 100.88 104.50 -3.62 0.40 N 61 4 "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? "C2'" A DC 2 ? ? 93.62 102.20 -8.58 0.70 N 62 4 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 111.08 108.30 2.78 0.30 N 63 4 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 123.11 118.90 4.21 0.60 N 64 4 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 116.30 121.90 -5.60 0.70 N 65 4 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 112.70 108.30 4.40 0.30 N 66 4 C6 A DC 3 ? ? N1 A DC 3 ? ? C2 A DC 3 ? ? 117.56 120.30 -2.74 0.40 N 67 4 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 124.09 118.90 5.19 0.60 N 68 4 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 114.62 121.90 -7.28 0.70 N 69 4 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.87 118.90 3.97 0.60 N 70 4 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 115.66 121.90 -6.24 0.70 N 71 4 "O4'" B DT 1 ? ? "C1'" B DT 1 ? ? N1 B DT 1 ? ? 110.66 108.30 2.36 0.30 N 72 4 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 110.61 108.30 2.31 0.30 N 73 4 N1 B DC 2 ? ? C2 B DC 2 ? ? O2 B DC 2 ? ? 123.08 118.90 4.18 0.60 N 74 4 N3 B DC 2 ? ? C2 B DC 2 ? ? O2 B DC 2 ? ? 116.38 121.90 -5.52 0.70 N 75 4 "O4'" B DC 3 ? ? "C1'" B DC 3 ? ? N1 B DC 3 ? ? 111.62 108.30 3.32 0.30 N 76 4 N1 B DC 3 ? ? C2 B DC 3 ? ? O2 B DC 3 ? ? 123.45 118.90 4.55 0.60 N 77 4 N3 B DC 3 ? ? C2 B DC 3 ? ? O2 B DC 3 ? ? 115.05 121.90 -6.85 0.70 N 78 4 N1 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 123.32 118.90 4.42 0.60 N 79 4 N3 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 115.62 121.90 -6.28 0.70 N 80 4 "O4'" D DT 1 ? ? "C1'" D DT 1 ? ? N1 D DT 1 ? ? 111.71 108.30 3.41 0.30 N 81 5 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 111.92 108.30 3.62 0.30 N 82 5 "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? "C2'" A DC 2 ? ? 97.54 102.20 -4.66 0.70 N 83 5 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 111.10 108.30 2.80 0.30 N 84 5 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 123.74 118.90 4.84 0.60 N 85 5 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 115.43 121.90 -6.47 0.70 N 86 5 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.99 108.30 2.69 0.30 N 87 5 C6 A DC 3 ? ? N1 A DC 3 ? ? C2 A DC 3 ? ? 117.46 120.30 -2.84 0.40 N 88 5 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 123.10 118.90 4.20 0.60 N 89 5 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 115.38 121.90 -6.52 0.70 N 90 5 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 123.16 118.90 4.26 0.60 N 91 5 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 115.63 121.90 -6.27 0.70 N 92 5 "C4'" B DC 2 ? ? "C3'" B DC 2 ? ? "C2'" B DC 2 ? ? 97.69 102.20 -4.51 0.70 N 93 5 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 113.26 108.30 4.96 0.30 N 94 5 N1 B DC 2 ? ? C2 B DC 2 ? ? O2 B DC 2 ? ? 123.15 118.90 4.25 0.60 N 95 5 N3 B DC 2 ? ? C2 B DC 2 ? ? O2 B DC 2 ? ? 115.79 121.90 -6.11 0.70 N 96 5 "O4'" B DC 3 ? ? "C1'" B DC 3 ? ? N1 B DC 3 ? ? 112.10 108.30 3.80 0.30 N 97 5 N1 B DC 3 ? ? C2 B DC 3 ? ? O2 B DC 3 ? ? 124.07 118.90 5.17 0.60 N 98 5 N3 B DC 3 ? ? C2 B DC 3 ? ? O2 B DC 3 ? ? 114.51 121.90 -7.39 0.70 N 99 5 "O4'" B DC 6 ? ? "C1'" B DC 6 ? ? N1 B DC 6 ? ? 111.33 108.30 3.03 0.30 N 100 5 N1 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 123.24 118.90 4.34 0.60 N 101 5 N3 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 115.45 121.90 -6.45 0.70 N 102 5 "O4'" C DT 1 ? ? "C1'" C DT 1 ? ? N1 C DT 1 ? ? 110.58 108.30 2.28 0.30 N 103 6 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 114.05 108.30 5.75 0.30 N 104 6 "O4'" A DC 2 ? ? "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? 100.23 104.50 -4.27 0.40 N 105 6 "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? "C2'" A DC 2 ? ? 96.89 102.20 -5.31 0.70 N 106 6 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 112.56 108.30 4.26 0.30 N 107 6 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 123.00 118.90 4.10 0.60 N 108 6 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 116.07 121.90 -5.83 0.70 N 109 6 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 111.07 108.30 2.77 0.30 N 110 6 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 123.41 118.90 4.51 0.60 N 111 6 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 115.22 121.90 -6.68 0.70 N 112 6 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.65 108.30 2.35 0.30 N 113 6 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 115.50 121.90 -6.40 0.70 N 114 6 "C4'" B DC 2 ? ? "C3'" B DC 2 ? ? "C2'" B DC 2 ? ? 96.50 102.20 -5.70 0.70 N 115 6 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 112.60 108.30 4.30 0.30 N 116 6 N1 B DC 2 ? ? C2 B DC 2 ? ? O2 B DC 2 ? ? 122.70 118.90 3.80 0.60 N 117 6 N3 B DC 2 ? ? C2 B DC 2 ? ? O2 B DC 2 ? ? 116.19 121.90 -5.71 0.70 N 118 6 "O4'" B DC 3 ? ? "C1'" B DC 3 ? ? N1 B DC 3 ? ? 114.00 108.30 5.70 0.30 N 119 6 N1 B DC 3 ? ? C2 B DC 3 ? ? O2 B DC 3 ? ? 123.50 118.90 4.60 0.60 N 120 6 N3 B DC 3 ? ? C2 B DC 3 ? ? O2 B DC 3 ? ? 114.78 121.90 -7.12 0.70 N 121 6 "O4'" B DC 6 ? ? "C1'" B DC 6 ? ? N1 B DC 6 ? ? 110.72 108.30 2.42 0.30 N 122 6 N1 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 123.90 118.90 5.00 0.60 N 123 6 N3 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 115.02 121.90 -6.88 0.70 N 124 6 "O4'" D DT 1 ? ? "C1'" D DT 1 ? ? N1 D DT 1 ? ? 110.82 108.30 2.52 0.30 N 125 7 "C3'" A DT 1 ? ? "C2'" A DT 1 ? ? "C1'" A DT 1 ? ? 97.13 102.40 -5.27 0.80 N 126 7 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 113.10 108.30 4.80 0.30 N 127 7 "O4'" A DC 2 ? ? "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? 102.04 104.50 -2.46 0.40 N 128 7 "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? "C2'" A DC 2 ? ? 96.84 102.20 -5.36 0.70 N 129 7 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 114.32 108.30 6.02 0.30 N 130 7 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 122.56 118.90 3.66 0.60 N 131 7 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 116.04 121.90 -5.86 0.70 N 132 7 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.96 108.30 2.66 0.30 N 133 7 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 122.80 118.90 3.90 0.60 N 134 7 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 115.77 121.90 -6.13 0.70 N 135 7 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 123.46 118.90 4.56 0.60 N 136 7 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 115.03 121.90 -6.87 0.70 N 137 7 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 112.31 108.30 4.01 0.30 N 138 7 N3 B DC 2 ? ? C2 B DC 2 ? ? O2 B DC 2 ? ? 116.61 121.90 -5.29 0.70 N 139 7 "O4'" B DC 3 ? ? "C1'" B DC 3 ? ? N1 B DC 3 ? ? 113.55 108.30 5.25 0.30 N 140 7 C6 B DC 3 ? ? N1 B DC 3 ? ? C2 B DC 3 ? ? 117.48 120.30 -2.82 0.40 N 141 7 N1 B DC 3 ? ? C2 B DC 3 ? ? O2 B DC 3 ? ? 123.36 118.90 4.46 0.60 N 142 7 N3 B DC 3 ? ? C2 B DC 3 ? ? O2 B DC 3 ? ? 115.19 121.90 -6.71 0.70 N 143 7 "O4'" B DC 6 ? ? "C1'" B DC 6 ? ? N1 B DC 6 ? ? 111.15 108.30 2.85 0.30 N 144 7 N1 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 123.72 118.90 4.82 0.60 N 145 7 N3 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 115.14 121.90 -6.76 0.70 N 146 8 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 112.23 108.30 3.93 0.30 N 147 8 "O5'" A DC 2 ? ? "C5'" A DC 2 ? ? "C4'" A DC 2 ? ? 103.78 109.40 -5.62 0.80 N 148 8 "O4'" A DC 2 ? ? "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? 101.83 104.50 -2.67 0.40 N 149 8 "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? "C2'" A DC 2 ? ? 93.98 102.20 -8.22 0.70 N 150 8 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 113.02 108.30 4.72 0.30 N 151 8 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 116.46 121.90 -5.44 0.70 N 152 8 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 113.69 108.30 5.39 0.30 N 153 8 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 123.44 118.90 4.54 0.60 N 154 8 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 115.13 121.90 -6.77 0.70 N 155 8 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 123.26 118.90 4.36 0.60 N 156 8 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 115.12 121.90 -6.78 0.70 N 157 8 "C4'" B DC 2 ? ? "C3'" B DC 2 ? ? "C2'" B DC 2 ? ? 96.80 102.20 -5.40 0.70 N 158 8 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 113.89 108.30 5.59 0.30 N 159 8 N3 B DC 2 ? ? C2 B DC 2 ? ? O2 B DC 2 ? ? 116.26 121.90 -5.64 0.70 N 160 8 "O4'" B DC 3 ? ? "C1'" B DC 3 ? ? N1 B DC 3 ? ? 113.46 108.30 5.16 0.30 N 161 8 C6 B DC 3 ? ? N1 B DC 3 ? ? C2 B DC 3 ? ? 117.84 120.30 -2.46 0.40 N 162 8 N1 B DC 3 ? ? C2 B DC 3 ? ? O2 B DC 3 ? ? 123.26 118.90 4.36 0.60 N 163 8 N3 B DC 3 ? ? C2 B DC 3 ? ? O2 B DC 3 ? ? 114.79 121.90 -7.11 0.70 N 164 8 N1 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 123.74 118.90 4.84 0.60 N 165 8 N3 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 115.09 121.90 -6.81 0.70 N 166 9 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 112.35 108.30 4.05 0.30 N 167 9 "O4'" A DC 2 ? ? "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? 101.05 104.50 -3.45 0.40 N 168 9 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.32 108.30 2.02 0.30 N 169 9 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 116.46 121.90 -5.44 0.70 N 170 9 N3 A DC 2 ? ? C4 A DC 2 ? ? N4 A DC 2 ? ? 113.54 118.00 -4.46 0.70 N 171 9 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.89 108.30 2.59 0.30 N 172 9 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 123.31 118.90 4.41 0.60 N 173 9 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 115.46 121.90 -6.44 0.70 N 174 9 N3 A DC 3 ? ? C4 A DC 3 ? ? N4 A DC 3 ? ? 113.58 118.00 -4.42 0.70 N 175 9 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 123.44 118.90 4.54 0.60 N 176 9 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 115.24 121.90 -6.66 0.70 N 177 9 "C4'" B DC 2 ? ? "C3'" B DC 2 ? ? "C2'" B DC 2 ? ? 97.39 102.20 -4.81 0.70 N 178 9 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 114.09 108.30 5.79 0.30 N 179 9 N3 B DC 2 ? ? C2 B DC 2 ? ? O2 B DC 2 ? ? 116.01 121.90 -5.89 0.70 N 180 9 "O4'" B DC 3 ? ? "C1'" B DC 3 ? ? N1 B DC 3 ? ? 114.17 108.30 5.87 0.30 N 181 9 C6 B DC 3 ? ? N1 B DC 3 ? ? C2 B DC 3 ? ? 117.82 120.30 -2.48 0.40 N 182 9 N1 B DC 3 ? ? C2 B DC 3 ? ? O2 B DC 3 ? ? 122.97 118.90 4.07 0.60 N 183 9 N3 B DC 3 ? ? C2 B DC 3 ? ? O2 B DC 3 ? ? 114.95 121.90 -6.95 0.70 N 184 9 "O4'" B DC 6 ? ? "C1'" B DC 6 ? ? N1 B DC 6 ? ? 111.21 108.30 2.91 0.30 N 185 9 N1 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 123.88 118.90 4.98 0.60 N 186 9 N3 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 115.08 121.90 -6.82 0.70 N 187 10 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 112.60 108.30 4.30 0.30 N 188 10 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 116.62 121.90 -5.28 0.70 N 189 10 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 123.07 118.90 4.17 0.60 N 190 10 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 115.59 121.90 -6.31 0.70 N 191 10 N3 A DC 3 ? ? C4 A DC 3 ? ? N4 A DC 3 ? ? 113.67 118.00 -4.33 0.70 N 192 10 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 123.05 118.90 4.15 0.60 N 193 10 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 116.12 121.90 -5.78 0.70 N 194 10 "C4'" B DC 2 ? ? "C3'" B DC 2 ? ? "C2'" B DC 2 ? ? 97.40 102.20 -4.80 0.70 N 195 10 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 112.50 108.30 4.20 0.30 N 196 10 N1 B DC 2 ? ? C2 B DC 2 ? ? O2 B DC 2 ? ? 123.40 118.90 4.50 0.60 N 197 10 N3 B DC 2 ? ? C2 B DC 2 ? ? O2 B DC 2 ? ? 115.16 121.90 -6.74 0.70 N 198 10 "O4'" B DC 3 ? ? "C1'" B DC 3 ? ? N1 B DC 3 ? ? 113.77 108.30 5.47 0.30 N 199 10 C6 B DC 3 ? ? N1 B DC 3 ? ? C2 B DC 3 ? ? 117.10 120.30 -3.20 0.40 N 200 10 N1 B DC 3 ? ? C2 B DC 3 ? ? O2 B DC 3 ? ? 123.62 118.90 4.72 0.60 N 201 10 N3 B DC 3 ? ? C2 B DC 3 ? ? O2 B DC 3 ? ? 114.70 121.90 -7.20 0.70 N 202 10 N1 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 123.80 118.90 4.90 0.60 N 203 10 N3 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 115.36 121.90 -6.54 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC A 6 ? ? 0.094 'SIDE CHAIN' 2 1 DC B 2 ? ? 0.153 'SIDE CHAIN' 3 1 DT C 1 ? ? 0.081 'SIDE CHAIN' 4 1 DT D 1 ? ? 0.078 'SIDE CHAIN' 5 2 DC A 2 ? ? 0.086 'SIDE CHAIN' 6 2 DC A 6 ? ? 0.090 'SIDE CHAIN' 7 2 DT B 1 ? ? 0.070 'SIDE CHAIN' 8 2 DC B 2 ? ? 0.093 'SIDE CHAIN' 9 2 DT D 1 ? ? 0.073 'SIDE CHAIN' 10 3 DC A 3 ? ? 0.083 'SIDE CHAIN' 11 3 DC A 6 ? ? 0.087 'SIDE CHAIN' 12 3 DC B 2 ? ? 0.090 'SIDE CHAIN' 13 4 DC A 2 ? ? 0.098 'SIDE CHAIN' 14 4 DC A 6 ? ? 0.072 'SIDE CHAIN' 15 4 DC B 2 ? ? 0.120 'SIDE CHAIN' 16 4 DC B 6 ? ? 0.074 'SIDE CHAIN' 17 4 DT D 1 ? ? 0.113 'SIDE CHAIN' 18 5 DC B 2 ? ? 0.152 'SIDE CHAIN' 19 6 DC A 2 ? ? 0.134 'SIDE CHAIN' 20 6 DC A 6 ? ? 0.063 'SIDE CHAIN' 21 6 DC B 2 ? ? 0.137 'SIDE CHAIN' 22 6 DT C 1 ? ? 0.073 'SIDE CHAIN' 23 7 DC A 2 ? ? 0.075 'SIDE CHAIN' 24 7 DC A 6 ? ? 0.091 'SIDE CHAIN' 25 7 DC B 2 ? ? 0.144 'SIDE CHAIN' 26 7 DC B 6 ? ? 0.065 'SIDE CHAIN' 27 7 DT C 1 ? ? 0.108 'SIDE CHAIN' 28 7 DT D 1 ? ? 0.147 'SIDE CHAIN' 29 8 DC A 2 ? ? 0.107 'SIDE CHAIN' 30 8 DC A 6 ? ? 0.063 'SIDE CHAIN' 31 8 DC B 2 ? ? 0.116 'SIDE CHAIN' 32 8 DC B 6 ? ? 0.072 'SIDE CHAIN' 33 8 DT C 1 ? ? 0.089 'SIDE CHAIN' 34 8 DT D 1 ? ? 0.158 'SIDE CHAIN' 35 9 DC A 2 ? ? 0.058 'SIDE CHAIN' 36 9 DC B 2 ? ? 0.128 'SIDE CHAIN' 37 9 DT C 1 ? ? 0.117 'SIDE CHAIN' 38 9 DT D 1 ? ? 0.117 'SIDE CHAIN' 39 10 DC B 2 ? ? 0.071 'SIDE CHAIN' 40 10 DT C 1 ? ? 0.156 'SIDE CHAIN' 41 10 DT D 1 ? ? 0.101 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 9S6I _pdbx_nmr_ensemble.conformers_calculated_total_number 10 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 9S6I _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.5 mM NA- TCC(FRC)(FRC)C, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label ;2'F-RNA iMotif ; _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # _pdbx_nmr_exptl_sample.solution_id 1 _pdbx_nmr_exptl_sample.component 'TCC(FRC)(FRC)C' _pdbx_nmr_exptl_sample.concentration 0.5 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling NA- # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 278.15 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 5 _pdbx_nmr_exptl_sample_conditions.ionic_strength 60 _pdbx_nmr_exptl_sample_conditions.details '10mM Sodium Phosphate buffer, 50mM potassium chloride' _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label pH5T5C _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D NOESY' 1 anisotropic 3 1 1 '2D HOESY' 2 anisotropic 4 1 1 '2D TOCSY' 1 anisotropic # _pdbx_nmr_refine.entry_id 9S6I _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details 'Distance and dihedral constrains from experimental NMR data' _pdbx_nmr_refine.software_ordinal 2 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement TopSpin ? 'Bruker Biospin' 2 'structure calculation' Amber 22 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 3 'chemical shift assignment' NMRFAM-SPARKY ? 'National Magnetic Resonance Facility at Madison (NMRFAM)' 4 'peak picking' NMRFAM-SPARKY ? 'National Magnetic Resonance Facility at Madison (NMRFAM)' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CFZ P P N N 1 CFZ N1 N N N 2 CFZ C2 C N N 3 CFZ O2 O N N 4 CFZ N3 N N N 5 CFZ C4 C N N 6 CFZ N4 N N N 7 CFZ C5 C N N 8 CFZ C6 C N N 9 CFZ "C1'" C N R 10 CFZ O1P O N N 11 CFZ "C2'" C N R 12 CFZ "F2'" F N N 13 CFZ O2P O N N 14 CFZ "C3'" C N R 15 CFZ "O3'" O N N 16 CFZ O3P O N N 17 CFZ "C4'" C N R 18 CFZ "O4'" O N N 19 CFZ "C5'" C N N 20 CFZ "O5'" O N N 21 CFZ HN4 H N N 22 CFZ HN4A H N N 23 CFZ H5 H N N 24 CFZ H6 H N N 25 CFZ "H1'" H N N 26 CFZ HO1P H N N 27 CFZ "H2'" H N N 28 CFZ "H3'" H N N 29 CFZ "HO3'" H N N 30 CFZ HO3P H N N 31 CFZ "H4'" H N N 32 CFZ "H5'" H N N 33 CFZ "H5'A" H N N 34 DC OP3 O N N 35 DC P P N N 36 DC OP1 O N N 37 DC OP2 O N N 38 DC "O5'" O N N 39 DC "C5'" C N N 40 DC "C4'" C N R 41 DC "O4'" O N N 42 DC "C3'" C N S 43 DC "O3'" O N N 44 DC "C2'" C N N 45 DC "C1'" C N R 46 DC N1 N N N 47 DC C2 C N N 48 DC O2 O N N 49 DC N3 N N N 50 DC C4 C N N 51 DC N4 N N N 52 DC C5 C N N 53 DC C6 C N N 54 DC HOP3 H N N 55 DC HOP2 H N N 56 DC "H5'" H N N 57 DC "H5''" H N N 58 DC "H4'" H N N 59 DC "H3'" H N N 60 DC "HO3'" H N N 61 DC "H2'" H N N 62 DC "H2''" H N N 63 DC "H1'" H N N 64 DC H41 H N N 65 DC H42 H N N 66 DC H5 H N N 67 DC H6 H N N 68 DNR P P N N 69 DNR OP1 O N N 70 DNR OP2 O N N 71 DNR "O5'" O N N 72 DNR "C5'" C N N 73 DNR "C4'" C N R 74 DNR "O4'" O N N 75 DNR "C1'" C N R 76 DNR N1 N N N 77 DNR C6 C N N 78 DNR C2 C N N 79 DNR O2 O N N 80 DNR N3 N N N 81 DNR C4 C N N 82 DNR N4 N N N 83 DNR C5 C N N 84 DNR "C2'" C N N 85 DNR "C3'" C N S 86 DNR "O3'" O N N 87 DNR OP3 O N N 88 DNR HOP2 H N N 89 DNR "H5'" H N N 90 DNR "H5''" H N N 91 DNR "H4'" H N N 92 DNR "H1'" H N N 93 DNR H6 H N N 94 DNR HN3 H N N 95 DNR H41 H N N 96 DNR H42 H N N 97 DNR H5 H N N 98 DNR "H2'" H N N 99 DNR "H2''" H N N 100 DNR "H3'" H N N 101 DNR "HO3'" H N N 102 DNR HOP3 H N N 103 DT OP3 O N N 104 DT P P N N 105 DT OP1 O N N 106 DT OP2 O N N 107 DT "O5'" O N N 108 DT "C5'" C N N 109 DT "C4'" C N R 110 DT "O4'" O N N 111 DT "C3'" C N S 112 DT "O3'" O N N 113 DT "C2'" C N N 114 DT "C1'" C N R 115 DT N1 N N N 116 DT C2 C N N 117 DT O2 O N N 118 DT N3 N N N 119 DT C4 C N N 120 DT O4 O N N 121 DT C5 C N N 122 DT C7 C N N 123 DT C6 C N N 124 DT HOP3 H N N 125 DT HOP2 H N N 126 DT "H5'" H N N 127 DT "H5''" H N N 128 DT "H4'" H N N 129 DT "H3'" H N N 130 DT "HO3'" H N N 131 DT "H2'" H N N 132 DT "H2''" H N N 133 DT "H1'" H N N 134 DT H3 H N N 135 DT H71 H N N 136 DT H72 H N N 137 DT H73 H N N 138 DT H6 H N N 139 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CFZ O2P P doub N N 1 CFZ P "O5'" sing N N 2 CFZ P O1P sing N N 3 CFZ P O3P sing N N 4 CFZ C6 N1 sing N N 5 CFZ C2 N1 sing N N 6 CFZ N1 "C1'" sing N N 7 CFZ N3 C2 sing N N 8 CFZ C2 O2 doub N N 9 CFZ C4 N3 doub N N 10 CFZ N4 C4 sing N N 11 CFZ C4 C5 sing N N 12 CFZ N4 HN4 sing N N 13 CFZ N4 HN4A sing N N 14 CFZ C5 C6 doub N N 15 CFZ C5 H5 sing N N 16 CFZ C6 H6 sing N N 17 CFZ "C2'" "C1'" sing N N 18 CFZ "C1'" "O4'" sing N N 19 CFZ "C1'" "H1'" sing N N 20 CFZ O1P HO1P sing N N 21 CFZ "C3'" "C2'" sing N N 22 CFZ "C2'" "F2'" sing N N 23 CFZ "C2'" "H2'" sing N N 24 CFZ "C3'" "O3'" sing N N 25 CFZ "C3'" "C4'" sing N N 26 CFZ "C3'" "H3'" sing N N 27 CFZ "O3'" "HO3'" sing N N 28 CFZ O3P HO3P sing N N 29 CFZ "O4'" "C4'" sing N N 30 CFZ "C5'" "C4'" sing N N 31 CFZ "C4'" "H4'" sing N N 32 CFZ "O5'" "C5'" sing N N 33 CFZ "C5'" "H5'" sing N N 34 CFZ "C5'" "H5'A" sing N N 35 DC OP3 P sing N N 36 DC OP3 HOP3 sing N N 37 DC P OP1 doub N N 38 DC P OP2 sing N N 39 DC P "O5'" sing N N 40 DC OP2 HOP2 sing N N 41 DC "O5'" "C5'" sing N N 42 DC "C5'" "C4'" sing N N 43 DC "C5'" "H5'" sing N N 44 DC "C5'" "H5''" sing N N 45 DC "C4'" "O4'" sing N N 46 DC "C4'" "C3'" sing N N 47 DC "C4'" "H4'" sing N N 48 DC "O4'" "C1'" sing N N 49 DC "C3'" "O3'" sing N N 50 DC "C3'" "C2'" sing N N 51 DC "C3'" "H3'" sing N N 52 DC "O3'" "HO3'" sing N N 53 DC "C2'" "C1'" sing N N 54 DC "C2'" "H2'" sing N N 55 DC "C2'" "H2''" sing N N 56 DC "C1'" N1 sing N N 57 DC "C1'" "H1'" sing N N 58 DC N1 C2 sing N N 59 DC N1 C6 sing N N 60 DC C2 O2 doub N N 61 DC C2 N3 sing N N 62 DC N3 C4 doub N N 63 DC C4 N4 sing N N 64 DC C4 C5 sing N N 65 DC N4 H41 sing N N 66 DC N4 H42 sing N N 67 DC C5 C6 doub N N 68 DC C5 H5 sing N N 69 DC C6 H6 sing N N 70 DNR P OP1 doub N N 71 DNR P OP2 sing N N 72 DNR P "O5'" sing N N 73 DNR P OP3 sing N N 74 DNR OP2 HOP2 sing N N 75 DNR "O5'" "C5'" sing N N 76 DNR "C5'" "C4'" sing N N 77 DNR "C5'" "H5'" sing N N 78 DNR "C5'" "H5''" sing N N 79 DNR "C4'" "O4'" sing N N 80 DNR "C4'" "C3'" sing N N 81 DNR "C4'" "H4'" sing N N 82 DNR "O4'" "C1'" sing N N 83 DNR "C1'" N1 sing N N 84 DNR "C1'" "C2'" sing N N 85 DNR "C1'" "H1'" sing N N 86 DNR N1 C6 sing N N 87 DNR N1 C2 sing N N 88 DNR C6 C5 doub N N 89 DNR C6 H6 sing N N 90 DNR C2 O2 doub N N 91 DNR C2 N3 sing N N 92 DNR N3 C4 doub N N 93 DNR N3 HN3 sing N N 94 DNR C4 N4 sing N N 95 DNR C4 C5 sing N N 96 DNR N4 H41 sing N N 97 DNR N4 H42 sing N N 98 DNR C5 H5 sing N N 99 DNR "C2'" "C3'" sing N N 100 DNR "C2'" "H2'" sing N N 101 DNR "C2'" "H2''" sing N N 102 DNR "C3'" "O3'" sing N N 103 DNR "C3'" "H3'" sing N N 104 DNR "O3'" "HO3'" sing N N 105 DNR OP3 HOP3 sing N N 106 DT OP3 P sing N N 107 DT OP3 HOP3 sing N N 108 DT P OP1 doub N N 109 DT P OP2 sing N N 110 DT P "O5'" sing N N 111 DT OP2 HOP2 sing N N 112 DT "O5'" "C5'" sing N N 113 DT "C5'" "C4'" sing N N 114 DT "C5'" "H5'" sing N N 115 DT "C5'" "H5''" sing N N 116 DT "C4'" "O4'" sing N N 117 DT "C4'" "C3'" sing N N 118 DT "C4'" "H4'" sing N N 119 DT "O4'" "C1'" sing N N 120 DT "C3'" "O3'" sing N N 121 DT "C3'" "C2'" sing N N 122 DT "C3'" "H3'" sing N N 123 DT "O3'" "HO3'" sing N N 124 DT "C2'" "C1'" sing N N 125 DT "C2'" "H2'" sing N N 126 DT "C2'" "H2''" sing N N 127 DT "C1'" N1 sing N N 128 DT "C1'" "H1'" sing N N 129 DT N1 C2 sing N N 130 DT N1 C6 sing N N 131 DT C2 O2 doub N N 132 DT C2 N3 sing N N 133 DT N3 C4 sing N N 134 DT N3 H3 sing N N 135 DT C4 O4 doub N N 136 DT C4 C5 sing N N 137 DT C5 C7 sing N N 138 DT C5 C6 doub N N 139 DT C7 H71 sing N N 140 DT C7 H72 sing N N 141 DT C7 H73 sing N N 142 DT C6 H6 sing N N 143 # _ndb_struct_conf_na.entry_id 9S6I _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 C DT 1 1_555 1.695 -1.641 -0.261 -19.303 12.160 179.305 1 A_DT1:DT1_C A 1 ? C 1 ? 12 2 1 D DNR 6 1_555 B DC 6 1_555 -1.947 -1.540 0.012 -6.889 -8.546 -179.617 2 D_DNR6:DC6_B D 6 ? B 6 ? 15 2 1 A DC 2 1_555 C DNR 2 1_555 -1.991 -1.858 0.080 11.750 16.808 -177.918 3 A_DC2:DNR2_C A 2 ? C 2 ? 15 2 1 D CFZ 5 1_555 B CFZ 5 1_555 -2.142 -2.211 0.113 -1.773 18.095 -178.637 4 D_CFZ5:CFZ5_B D 5 ? B 5 ? 15 2 1 A DC 3 1_555 C DNR 3 1_555 -1.997 -1.733 0.078 6.410 10.092 -179.208 5 A_DC3:DNR3_C A 3 ? C 3 ? 15 2 1 D CFZ 4 1_555 B CFZ 4 1_555 -1.907 -1.648 -0.135 -0.130 16.256 -177.764 6 D_CFZ4:CFZ4_B D 4 ? B 4 ? 15 2 1 A CFZ 4 1_555 C CFZ 4 1_555 1.908 1.729 0.200 2.763 -15.130 177.023 7 A_CFZ4:CFZ4_C A 4 ? C 4 ? 15 2 1 D DNR 3 1_555 B DC 3 1_555 1.960 1.627 -0.296 -5.789 -10.969 179.077 8 D_DNR3:DC3_B D 3 ? B 3 ? 15 2 1 A CFZ 5 1_555 C CFZ 5 1_555 2.096 2.059 -0.142 6.106 -20.606 177.836 9 A_CFZ5:CFZ5_C A 5 ? C 5 ? 15 2 1 D DNR 2 1_555 B DC 2 1_555 1.892 1.564 0.092 -16.535 -23.687 179.975 10 D_DNR2:DC2_B D 2 ? B 2 ? 15 2 1 A DC 6 1_555 C DNR 6 1_555 -1.754 -1.376 -0.211 7.704 27.241 -178.510 11 A_DC6:DNR6_C A 6 ? C 6 ? 15 2 1 D DT 1 1_555 B DT 1 1_555 -1.599 1.674 0.119 6.495 -15.686 -178.704 12 D_DT1:DT1_B D 1 ? B 1 ? 12 2 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 C DT 1 1_555 D DNR 6 1_555 B DC 6 1_555 -2.214 -2.909 -0.137 -140.316 109.177 -105.477 1.477 -1.078 -0.085 -54.727 -70.336 -178.660 1 AD_DT1DNR6:DC6DT1_BC A 1 ? C 1 ? D 6 ? B 6 ? 1 D DNR 6 1_555 B DC 6 1_555 A DC 2 1_555 C DNR 2 1_555 -2.251 2.600 -0.371 -148.769 -98.630 -157.452 -1.322 -1.092 -0.450 49.323 -74.397 -179.706 2 DA_DNR6DC2:DNR2DC6_CB D 6 ? B 6 ? A 2 ? C 2 ? 1 A DC 2 1_555 C DNR 2 1_555 D CFZ 5 1_555 B CFZ 5 1_555 -1.661 1.802 0.160 124.217 123.860 167.560 0.895 0.837 0.170 61.940 -62.118 179.504 3 AD_DC2CFZ5:CFZ5DNR2_BC A 2 ? C 2 ? D 5 ? B 5 ? 1 D CFZ 5 1_555 B CFZ 5 1_555 A DC 3 1_555 C DNR 3 1_555 2.153 -3.197 -0.575 143.823 101.317 120.964 -1.514 -1.197 -0.540 50.811 -72.128 177.994 4 DA_CFZ5DC3:DNR3CFZ5_CB D 5 ? B 5 ? A 3 ? C 3 ? 1 A DC 3 1_555 C DNR 3 1_555 D CFZ 4 1_555 B CFZ 4 1_555 -1.717 1.794 -0.039 133.892 117.257 -29.478 -0.912 -0.842 0.096 -59.125 67.513 -178.044 5 AD_DC3CFZ4:CFZ4DNR3_BC A 3 ? C 3 ? D 4 ? B 4 ? 1 D CFZ 4 1_555 B CFZ 4 1_555 A CFZ 4 1_555 C CFZ 4 1_555 -3.289 -2.037 -0.268 103.536 -140.244 -171.584 1.011 -1.650 -0.245 70.128 51.773 -179.584 6 DA_CFZ4CFZ4:CFZ4CFZ4_CB D 4 ? B 4 ? A 4 ? C 4 ? 1 A CFZ 4 1_555 C CFZ 4 1_555 D DNR 3 1_555 B DC 3 1_555 1.698 -1.832 0.262 -129.591 -116.482 -49.044 1.004 0.753 0.144 59.366 -66.046 -174.766 7 AD_CFZ4DNR3:DC3CFZ4_BC A 4 ? C 4 ? D 3 ? B 3 ? 1 D DNR 3 1_555 B DC 3 1_555 A CFZ 5 1_555 C CFZ 5 1_555 2.428 -3.127 -0.131 141.274 103.487 104.952 -1.547 -1.237 -0.036 52.041 -71.044 177.030 8 DA_DNR3CFZ5:CFZ5DC3_CB D 3 ? B 3 ? A 5 ? C 5 ? 1 A CFZ 5 1_555 C CFZ 5 1_555 D DNR 2 1_555 B DC 2 1_555 -1.408 1.662 0.274 124.541 121.949 -30.061 -0.884 -0.652 -0.080 -62.450 63.777 -174.500 9 AD_CFZ5DNR2:DC2CFZ5_BC A 5 ? C 5 ? D 2 ? B 2 ? 1 D DNR 2 1_555 B DC 2 1_555 A DC 6 1_555 C DNR 6 1_555 4.290 1.724 1.090 -97.549 138.031 115.202 0.693 -2.268 0.351 69.710 49.265 174.124 10 DA_DNR2DC6:DNR6DC2_CB D 2 ? B 2 ? A 6 ? C 6 ? 1 A DC 6 1_555 C DNR 6 1_555 D DT 1 1_555 B DT 1 1_555 2.444 -1.848 -1.054 -88.758 -145.680 75.567 -1.231 -1.039 -0.405 -74.393 45.325 172.566 11 AD_DC6DT1:DT1DNR6_BC A 6 ? C 6 ? D 1 ? B 1 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Spanish Ministry of Science, Innovation, and Universities' Spain PID2020-116620GB-I00 1 'Spanish Ministry of Science, Innovation, and Universities' Spain PID2023-146366NB-I00 2 'Spanish Ministry of Science, Innovation, and Universities' Spain PID2023-148655OB-I00 3 'Spanish Ministry of Science, Innovation, and Universities' Spain 'PMTPA23/00008, XNA-Hub' 4 # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 'AVANCE NEO' ? Bruker 600 ? 2 'AVANCE NEO' ? Bruker 800 ? # _atom_sites.entry_id 9S6I _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C F H N O P # loop_ #