HEADER TRANSFERASE 01-AUG-25 9S6K TITLE STRUCTURE OF C. TEPIDUM REL IN AN OPEN STATE IN COMPLEX WITH NB898 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NANOBODY NB898; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GTP PYROPHOSPHOKINASE; COMPND 7 CHAIN: B, D; COMPND 8 EC: 2.7.6.5; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 3 ORGANISM_TAXID: 9844; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: CHLOROBACULUM TEPIDUM; SOURCE 8 ORGANISM_TAXID: 1097; SOURCE 9 GENE: RELA, CT1545; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS GTP-PYROPHOSPHOKINASE (P)PPGPP HYDROLASE NUCLEOTIDE BINDING CATION KEYWDS 2 BINDING ION BINDING METAL ION BINDING NANOBODY, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GARCIA-PINO,K.VAN NEROM,A.TALAVERA PEREZ REVDAT 1 12-AUG-26 9S6K 0 JRNL AUTH A.GARCIA-PINO,K.VAN NEROM,A.TALAVERA PEREZ JRNL TITL STRUCTURE OF C. TEPIDUM REL IN AN OPEN STATE IN COMPLEX WITH JRNL TITL 2 NB898 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 2.0_5885 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 96.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 60.2 REMARK 3 NUMBER OF REFLECTIONS : 11043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.280 REMARK 3 R VALUE (WORKING SET) : 0.279 REMARK 3 FREE R VALUE : 0.304 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.720 REMARK 3 FREE R VALUE TEST SET COUNT : 521 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 96.0730 - 5.0000 0.99 4403 219 0.2670 0.3081 REMARK 3 2 5.0000 - 3.9700 0.82 3598 170 0.2780 0.2975 REMARK 3 3 3.9700 - 3.4700 0.40 1720 90 0.3042 0.2894 REMARK 3 4 3.4700 - 3.1500 0.18 801 42 0.3086 0.3612 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.438 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.483 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 6381 REMARK 3 ANGLE : 1.289 8707 REMARK 3 CHIRALITY : 0.092 1032 REMARK 3 PLANARITY : 0.007 1127 REMARK 3 DIHEDRAL : 14.442 2159 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9S6K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-AUG-25. REMARK 100 THE DEPOSITION ID IS D_1292149569. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976250 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11630 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.150 REMARK 200 RESOLUTION RANGE LOW (A) : 96.073 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.8 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.61900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 3.23500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 29 % W/V PEG 6000 0.2 M SODIUM REMARK 280 CITRATE, 40% PEG 400, PH 3.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 98.71350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.14950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 98.71350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.14950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 SER A 115 REMARK 465 HIS A 116 REMARK 465 HIS A 117 REMARK 465 HIS A 118 REMARK 465 HIS A 119 REMARK 465 HIS A 120 REMARK 465 HIS A 121 REMARK 465 GLU A 122 REMARK 465 PRO A 123 REMARK 465 GLU A 124 REMARK 465 ALA A 125 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 VAL B 118 REMARK 465 ASN B 119 REMARK 465 ARG B 120 REMARK 465 GLU B 121 REMARK 465 THR B 122 REMARK 465 THR B 123 REMARK 465 MET B 258 REMARK 465 LYS B 259 REMARK 465 ASN B 260 REMARK 465 LYS B 261 REMARK 465 LYS B 262 REMARK 465 PHE B 263 REMARK 465 ASP B 264 REMARK 465 ASP B 265 REMARK 465 ILE B 266 REMARK 465 GLU B 340 REMARK 465 PHE B 341 REMARK 465 ALA B 342 REMARK 465 GLU B 343 REMARK 465 LEU B 344 REMARK 465 GLY B 345 REMARK 465 VAL B 346 REMARK 465 SER C 115 REMARK 465 HIS C 116 REMARK 465 HIS C 117 REMARK 465 HIS C 118 REMARK 465 HIS C 119 REMARK 465 HIS C 120 REMARK 465 HIS C 121 REMARK 465 GLU C 122 REMARK 465 PRO C 123 REMARK 465 GLU C 124 REMARK 465 ALA C 125 REMARK 465 MET D 1 REMARK 465 LEU D 2 REMARK 465 ALA D 3 REMARK 465 GLN D 4 REMARK 465 ILE D 5 REMARK 465 GLU D 6 REMARK 465 GLN D 7 REMARK 465 ASN D 119 REMARK 465 ARG D 120 REMARK 465 GLU D 121 REMARK 465 THR D 122 REMARK 465 THR D 123 REMARK 465 ASN D 260 REMARK 465 LYS D 261 REMARK 465 LYS D 262 REMARK 465 PHE D 263 REMARK 465 ASP D 264 REMARK 465 ASP D 265 REMARK 465 ILE D 266 REMARK 465 HIS D 267 REMARK 465 HIS D 339 REMARK 465 GLU D 340 REMARK 465 PHE D 341 REMARK 465 ALA D 342 REMARK 465 GLU D 343 REMARK 465 LEU D 344 REMARK 465 GLY D 345 REMARK 465 VAL D 346 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 3 CG CD OE1 NE2 REMARK 470 GLN A 13 CG CD OE1 NE2 REMARK 470 ARG A 19 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 55 CG OD1 OD2 REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 LYS A 76 CD CE NZ REMARK 470 GLN A 82 CG CD OE1 NE2 REMARK 470 MET A 83 CG SD CE REMARK 470 LYS A 87 CG CD CE NZ REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 ILE A 99 CD1 REMARK 470 TYR A 104 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 107 CG CD OE1 NE2 REMARK 470 SER A 114 OG REMARK 470 ARG B 18 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 25 CG CD CE NZ REMARK 470 LYS B 47 CG CD CE NZ REMARK 470 ARG B 48 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 52 CG CD OE1 OE2 REMARK 470 GLU B 60 CG CD OE1 OE2 REMARK 470 LYS B 63 CG CD CE NZ REMARK 470 LEU B 71 CG CD1 CD2 REMARK 470 GLU B 86 CG CD OE1 OE2 REMARK 470 GLU B 98 CG CD OE1 OE2 REMARK 470 LYS B 112 CG CD CE NZ REMARK 470 SER B 114 OG REMARK 470 GLU B 115 CG CD OE1 OE2 REMARK 470 ILE B 116 CG1 CG2 CD1 REMARK 470 MET B 117 CG SD CE REMARK 470 GLU B 124 CG CD OE1 OE2 REMARK 470 GLU B 126 CG CD OE1 OE2 REMARK 470 ARG B 129 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 130 CG CD CE NZ REMARK 470 LEU B 132 CG CD1 CD2 REMARK 470 LYS B 137 CG CD CE NZ REMARK 470 LYS B 145 CE NZ REMARK 470 LEU B 156 CG CD1 CD2 REMARK 470 GLU B 161 CG CD OE1 OE2 REMARK 470 ARG B 163 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 164 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 186 CG CD CE NZ REMARK 470 GLU B 192 CG CD OE1 OE2 REMARK 470 MET B 203 CG SD CE REMARK 470 TYR B 206 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU B 207 CG CD1 CD2 REMARK 470 LYS B 209 CG CD CE NZ REMARK 470 LYS B 210 CG CD CE NZ REMARK 470 VAL B 211 CG1 CG2 REMARK 470 ARG B 212 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 213 CG CD1 CD2 REMARK 470 SER B 214 OG REMARK 470 ARG B 215 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 216 CG OD1 ND2 REMARK 470 GLU B 217 CG CD OE1 OE2 REMARK 470 LYS B 224 CG CD CE NZ REMARK 470 LYS B 230 CG CD CE NZ REMARK 470 ASP B 232 CG OD1 OD2 REMARK 470 LYS B 235 CD CE NZ REMARK 470 TYR B 250 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE B 252 CG1 CG2 CD1 REMARK 470 TYR B 253 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 255 CG CD CE NZ REMARK 470 MET B 256 CG SD CE REMARK 470 ARG B 257 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 267 CG ND1 CD2 CE1 NE2 REMARK 470 LEU B 269 CG CD1 CD2 REMARK 470 GLU B 279 CG CD OE1 OE2 REMARK 470 GLN B 294 CG CD OE1 NE2 REMARK 470 GLN B 300 CG CD OE1 NE2 REMARK 470 LYS B 303 CG CD CE NZ REMARK 470 LYS B 310 CG CD CE NZ REMARK 470 HIS B 311 CG ND1 CD2 CE1 NE2 REMARK 470 TYR B 314 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN B 315 CG CD OE1 NE2 REMARK 470 LYS B 325 CD CE NZ REMARK 470 ARG B 336 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 337 CG CD NE CZ NH1 NH2 REMARK 470 MET B 338 CG SD CE REMARK 470 GLN C 3 CG CD OE1 NE2 REMARK 470 GLN C 5 CG CD OE1 NE2 REMARK 470 GLU C 29 CG CD OE1 OE2 REMARK 470 ARG C 72 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 76 CG CD CE NZ REMARK 470 LYS C 87 CG CD CE NZ REMARK 470 GLU C 89 CG CD OE1 OE2 REMARK 470 ASP C 90 CG OD1 OD2 REMARK 470 ASN C 97 CG OD1 ND2 REMARK 470 LYS C 98 CG CD CE NZ REMARK 470 ILE C 99 CG1 CG2 CD1 REMARK 470 TYR C 104 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN C 107 CG CD OE1 NE2 REMARK 470 SER C 114 OG REMARK 470 GLU D 8 CG CD OE1 OE2 REMARK 470 HIS D 9 CG ND1 CD2 CE1 NE2 REMARK 470 GLU D 15 CG CD OE1 OE2 REMARK 470 ARG D 18 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 21 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 25 CG CD CE NZ REMARK 470 ASN D 26 CG OD1 ND2 REMARK 470 GLU D 29 CG CD OE1 OE2 REMARK 470 TYR D 40 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG D 41 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 44 CG CD OE1 OE2 REMARK 470 GLU D 46 CG CD OE1 OE2 REMARK 470 LYS D 47 CG CD CE NZ REMARK 470 ARG D 48 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 52 CG CD OE1 OE2 REMARK 470 TYR D 56 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS D 63 CG CD CE NZ REMARK 470 LEU D 71 CG CD1 CD2 REMARK 470 ASP D 72 CG OD1 OD2 REMARK 470 GLU D 93 CG CD OE1 OE2 REMARK 470 ASP D 94 CG OD1 OD2 REMARK 470 GLU D 98 CG CD OE1 OE2 REMARK 470 GLU D 102 CG CD OE1 OE2 REMARK 470 ASP D 105 CG OD1 OD2 REMARK 470 LYS D 112 CG CD CE NZ REMARK 470 GLU D 115 CG CD OE1 OE2 REMARK 470 ILE D 116 CG1 CG2 CD1 REMARK 470 MET D 117 CG SD CE REMARK 470 VAL D 118 CG1 CG2 REMARK 470 GLU D 124 CG CD OE1 OE2 REMARK 470 GLU D 126 CG CD OE1 OE2 REMARK 470 ARG D 129 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 137 CG CD CE NZ REMARK 470 GLU D 161 CG CD OE1 OE2 REMARK 470 ARG D 164 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 166 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 186 CG CD CE NZ REMARK 470 GLU D 192 CG CD OE1 OE2 REMARK 470 LEU D 196 CG CD1 CD2 REMARK 470 ILE D 199 CG1 CG2 CD1 REMARK 470 GLU D 202 CG CD OE1 OE2 REMARK 470 ASP D 205 CG OD1 OD2 REMARK 470 TYR D 206 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS D 209 CG CD CE NZ REMARK 470 LYS D 210 CG CD CE NZ REMARK 470 VAL D 211 CG1 CG2 REMARK 470 ARG D 212 CG CD NE CZ NH1 NH2 REMARK 470 LEU D 213 CG CD1 CD2 REMARK 470 SER D 214 OG REMARK 470 ASN D 216 CG OD1 ND2 REMARK 470 GLU D 217 CG CD OE1 OE2 REMARK 470 LYS D 224 CG CD CE NZ REMARK 470 LYS D 230 CG CD CE NZ REMARK 470 ASP D 232 CG OD1 OD2 REMARK 470 LYS D 235 CG CD CE NZ REMARK 470 LEU D 242 CG CD1 CD2 REMARK 470 ARG D 245 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 247 CG CD CE NZ REMARK 470 HIS D 248 CG ND1 CD2 CE1 NE2 REMARK 470 LEU D 249 CG CD1 CD2 REMARK 470 TYR D 250 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE D 252 CG1 CG2 CD1 REMARK 470 TYR D 253 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS D 255 CE NZ REMARK 470 MET D 256 CG SD CE REMARK 470 ARG D 257 CG CD NE CZ NH1 NH2 REMARK 470 MET D 258 CG SD CE REMARK 470 LYS D 259 CG CD CE NZ REMARK 470 LEU D 269 CG CD1 CD2 REMARK 470 GLU D 279 CG CD OE1 OE2 REMARK 470 GLN D 294 CG CD OE1 NE2 REMARK 470 HIS D 311 CG ND1 CD2 CE1 NE2 REMARK 470 LYS D 325 CG CD CE NZ REMARK 470 ARG D 336 CG CD NE CZ NH1 NH2 REMARK 470 MET D 338 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 101 143.02 79.35 REMARK 500 LEU B 71 -79.58 -107.53 REMARK 500 ALA B 246 23.85 -152.66 REMARK 500 ASN C 101 132.98 78.59 REMARK 500 TYR D 10 -158.85 -106.62 REMARK 500 LEU D 71 -86.18 -116.45 REMARK 500 LEU D 99 -60.62 -91.41 REMARK 500 MET D 117 -179.84 -176.58 REMARK 500 VAL D 136 -65.60 -100.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 MN B 401 REMARK 615 MN D 401 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 57 NE2 REMARK 620 2 HIS B 82 NE2 71.8 REMARK 620 3 ASP B 148 OD2 79.1 65.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 57 NE2 REMARK 620 2 HIS D 82 NE2 80.5 REMARK 620 3 ASP D 148 OD1 78.3 101.9 REMARK 620 N 1 2 DBREF 9S6K A 1 125 PDB 9S6K 9S6K 1 125 DBREF 9S6K B 1 346 UNP Q8KC80 Q8KC80_CHLTE 1 346 DBREF 9S6K C 1 125 PDB 9S6K 9S6K 1 125 DBREF 9S6K D 1 346 UNP Q8KC80 Q8KC80_CHLTE 1 346 SEQRES 1 A 125 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 125 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 125 SER ILE GLU SER ILE ASN ALA MET ALA TRP TYR ARG GLN SEQRES 4 A 125 ALA PRO GLY LYS PRO ARG GLU LEU VAL ALA VAL ILE ALA SEQRES 5 A 125 LYS SER ASP GLY SER THR THR TYR ALA VAL PRO VAL LYS SEQRES 6 A 125 GLY ARG PHE THR ILE SER ARG ASP ASP ALA LYS ASN THR SEQRES 7 A 125 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 A 125 ALA ILE TYR TYR CYS ASN LYS ILE PRO ASN PHE THR TYR SEQRES 9 A 125 TRP GLY GLN GLY THR GLN VAL THR VAL SER SER HIS HIS SEQRES 10 A 125 HIS HIS HIS HIS GLU PRO GLU ALA SEQRES 1 B 346 MET LEU ALA GLN ILE GLU GLN GLU HIS TYR SER LYS LEU SEQRES 2 B 346 HIS GLU ILE LEU ARG LEU CYS ARG ALA ASN LEU LYS ASN SEQRES 3 B 346 TYR ASP GLU SER LEU ILE GLN ARG ALA PHE PHE MET CYS SEQRES 4 B 346 TYR ARG ALA HIS GLU GLY GLU LYS ARG ALA SER GLY GLU SEQRES 5 B 346 PRO PHE PHE TYR HIS PRO VAL GLU VAL ALA LYS LEU LEU SEQRES 6 B 346 VAL THR GLU LEU PRO LEU ASP GLY VAL SER VAL ALA ALA SEQRES 7 B 346 ALA LEU LEU HIS ASP VAL ILE GLU ASP SER GLY TYR THR SEQRES 8 B 346 TYR GLU ASP ILE SER ALA GLU LEU GLY ALA GLU VAL ALA SEQRES 9 B 346 ASP ILE VAL GLU GLY LEU THR LYS ILE SER GLU ILE MET SEQRES 10 B 346 VAL ASN ARG GLU THR THR GLU ALA GLU GLY PHE ARG LYS SEQRES 11 B 346 MET LEU LEU SER MET VAL LYS ASP ILE ARG VAL ILE LEU SEQRES 12 B 346 ILE LYS PHE CYS ASP ARG LEU HIS ASN MET ARG THR LEU SEQRES 13 B 346 ASP SER LEU PRO GLU HIS ARG ARG LEU ARG MET ALA LEU SEQRES 14 B 346 GLU THR ARG ASP ILE TYR ALA PRO LEU ALA HIS ARG PHE SEQRES 15 B 346 GLY LEU GLY LYS MET LYS VAL ASP LEU GLU ASN LEU ALA SEQRES 16 B 346 LEU LYS TYR ILE ASP PRO GLU MET TYR ASP TYR LEU LEU SEQRES 17 B 346 LYS LYS VAL ARG LEU SER ARG ASN GLU ARG VAL ALA TYR SEQRES 18 B 346 LEU ASN LYS MET ILE ALA PRO ILE LYS ASP ASP LEU GLU SEQRES 19 B 346 LYS GLN GLY PHE THR VAL GLU LEU GLN GLY ARG ALA LYS SEQRES 20 B 346 HIS LEU TYR SER ILE TYR ASN LYS MET ARG MET LYS ASN SEQRES 21 B 346 LYS LYS PHE ASP ASP ILE HIS ASP LEU TYR GLY ILE ARG SEQRES 22 B 346 VAL ILE ILE ASP THR GLU LYS ILE SER ASP CYS PHE ALA SEQRES 23 B 346 VAL TYR GLY TYR ILE THR GLN GLN PHE PRO PRO ILE PRO SEQRES 24 B 346 GLN HIS PHE LYS ASP TYR ILE SER ILE PRO LYS HIS ASN SEQRES 25 B 346 GLY TYR GLN SER LEU HIS SER ALA ILE ILE GLY PRO LYS SEQRES 26 B 346 GLY HIS VAL VAL GLU LEU GLN ILE ARG THR ARG ARG MET SEQRES 27 B 346 HIS GLU PHE ALA GLU LEU GLY VAL SEQRES 1 C 125 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 C 125 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 C 125 SER ILE GLU SER ILE ASN ALA MET ALA TRP TYR ARG GLN SEQRES 4 C 125 ALA PRO GLY LYS PRO ARG GLU LEU VAL ALA VAL ILE ALA SEQRES 5 C 125 LYS SER ASP GLY SER THR THR TYR ALA VAL PRO VAL LYS SEQRES 6 C 125 GLY ARG PHE THR ILE SER ARG ASP ASP ALA LYS ASN THR SEQRES 7 C 125 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 C 125 ALA ILE TYR TYR CYS ASN LYS ILE PRO ASN PHE THR TYR SEQRES 9 C 125 TRP GLY GLN GLY THR GLN VAL THR VAL SER SER HIS HIS SEQRES 10 C 125 HIS HIS HIS HIS GLU PRO GLU ALA SEQRES 1 D 346 MET LEU ALA GLN ILE GLU GLN GLU HIS TYR SER LYS LEU SEQRES 2 D 346 HIS GLU ILE LEU ARG LEU CYS ARG ALA ASN LEU LYS ASN SEQRES 3 D 346 TYR ASP GLU SER LEU ILE GLN ARG ALA PHE PHE MET CYS SEQRES 4 D 346 TYR ARG ALA HIS GLU GLY GLU LYS ARG ALA SER GLY GLU SEQRES 5 D 346 PRO PHE PHE TYR HIS PRO VAL GLU VAL ALA LYS LEU LEU SEQRES 6 D 346 VAL THR GLU LEU PRO LEU ASP GLY VAL SER VAL ALA ALA SEQRES 7 D 346 ALA LEU LEU HIS ASP VAL ILE GLU ASP SER GLY TYR THR SEQRES 8 D 346 TYR GLU ASP ILE SER ALA GLU LEU GLY ALA GLU VAL ALA SEQRES 9 D 346 ASP ILE VAL GLU GLY LEU THR LYS ILE SER GLU ILE MET SEQRES 10 D 346 VAL ASN ARG GLU THR THR GLU ALA GLU GLY PHE ARG LYS SEQRES 11 D 346 MET LEU LEU SER MET VAL LYS ASP ILE ARG VAL ILE LEU SEQRES 12 D 346 ILE LYS PHE CYS ASP ARG LEU HIS ASN MET ARG THR LEU SEQRES 13 D 346 ASP SER LEU PRO GLU HIS ARG ARG LEU ARG MET ALA LEU SEQRES 14 D 346 GLU THR ARG ASP ILE TYR ALA PRO LEU ALA HIS ARG PHE SEQRES 15 D 346 GLY LEU GLY LYS MET LYS VAL ASP LEU GLU ASN LEU ALA SEQRES 16 D 346 LEU LYS TYR ILE ASP PRO GLU MET TYR ASP TYR LEU LEU SEQRES 17 D 346 LYS LYS VAL ARG LEU SER ARG ASN GLU ARG VAL ALA TYR SEQRES 18 D 346 LEU ASN LYS MET ILE ALA PRO ILE LYS ASP ASP LEU GLU SEQRES 19 D 346 LYS GLN GLY PHE THR VAL GLU LEU GLN GLY ARG ALA LYS SEQRES 20 D 346 HIS LEU TYR SER ILE TYR ASN LYS MET ARG MET LYS ASN SEQRES 21 D 346 LYS LYS PHE ASP ASP ILE HIS ASP LEU TYR GLY ILE ARG SEQRES 22 D 346 VAL ILE ILE ASP THR GLU LYS ILE SER ASP CYS PHE ALA SEQRES 23 D 346 VAL TYR GLY TYR ILE THR GLN GLN PHE PRO PRO ILE PRO SEQRES 24 D 346 GLN HIS PHE LYS ASP TYR ILE SER ILE PRO LYS HIS ASN SEQRES 25 D 346 GLY TYR GLN SER LEU HIS SER ALA ILE ILE GLY PRO LYS SEQRES 26 D 346 GLY HIS VAL VAL GLU LEU GLN ILE ARG THR ARG ARG MET SEQRES 27 D 346 HIS GLU PHE ALA GLU LEU GLY VAL HET MN B 401 1 HET MN D 401 1 HETNAM MN MANGANESE (II) ION FORMUL 5 MN 2(MN 2+) HELIX 1 AA1 LYS A 87 THR A 91 5 5 HELIX 2 AA2 GLU B 6 LEU B 24 1 19 HELIX 3 AA3 ASP B 28 HIS B 43 1 16 HELIX 4 AA4 PHE B 55 LEU B 69 1 15 HELIX 5 AA5 ASP B 72 LEU B 81 1 10 HELIX 6 AA6 THR B 91 LEU B 99 1 9 HELIX 7 AA7 GLY B 100 SER B 114 1 15 HELIX 8 AA8 ALA B 125 VAL B 136 1 12 HELIX 9 AA9 ASP B 138 THR B 155 1 18 HELIX 10 AB1 LEU B 156 LEU B 159 5 4 HELIX 11 AB2 PRO B 160 ILE B 174 1 15 HELIX 12 AB3 ILE B 174 PHE B 182 1 9 HELIX 13 AB4 LEU B 184 ASP B 200 1 17 HELIX 14 AB5 ASP B 200 VAL B 211 1 12 HELIX 15 AB6 SER B 214 GLN B 236 1 23 HELIX 16 AB7 LEU B 249 ARG B 257 1 9 HELIX 17 AB8 ILE B 281 PHE B 295 1 15 HELIX 18 AB9 PRO B 324 GLY B 326 5 3 HELIX 19 AC1 SER C 27 ILE C 31 5 5 HELIX 20 AC2 VAL C 62 LYS C 65 5 4 HELIX 21 AC3 LYS C 87 THR C 91 5 5 HELIX 22 AC4 LYS D 12 LEU D 24 1 13 HELIX 23 AC5 ASP D 28 HIS D 43 1 16 HELIX 24 AC6 PHE D 55 LEU D 69 1 15 HELIX 25 AC7 ASP D 72 LEU D 81 1 10 HELIX 26 AC8 THR D 91 LEU D 99 1 9 HELIX 27 AC9 GLY D 100 GLU D 115 1 16 HELIX 28 AD1 ALA D 125 SER D 134 1 10 HELIX 29 AD2 ASP D 138 THR D 155 1 18 HELIX 30 AD3 LEU D 156 LEU D 159 5 4 HELIX 31 AD4 PRO D 160 ILE D 174 1 15 HELIX 32 AD5 ILE D 174 PHE D 182 1 9 HELIX 33 AD6 LEU D 184 ASP D 200 1 17 HELIX 34 AD7 ASP D 200 VAL D 211 1 12 HELIX 35 AD8 SER D 214 GLN D 236 1 23 HELIX 36 AD9 LEU D 249 MET D 258 1 10 HELIX 37 AE1 ILE D 281 PHE D 295 1 15 HELIX 38 AE2 PRO D 324 GLY D 326 5 3 SHEET 1 AA1 4 LEU A 4 SER A 7 0 SHEET 2 AA1 4 LEU A 18 ALA A 24 -1 O ALA A 23 N GLN A 5 SHEET 3 AA1 4 THR A 78 MET A 83 -1 O MET A 83 N LEU A 18 SHEET 4 AA1 4 PHE A 68 ASP A 73 -1 N ASP A 73 O THR A 78 SHEET 1 AA2 6 GLY A 10 VAL A 12 0 SHEET 2 AA2 6 THR A 109 VAL A 113 1 O THR A 112 N VAL A 12 SHEET 3 AA2 6 ALA A 92 LYS A 98 -1 N ALA A 92 O VAL A 111 SHEET 4 AA2 6 ALA A 33 GLN A 39 -1 N TYR A 37 O TYR A 95 SHEET 5 AA2 6 ARG A 45 ALA A 52 -1 O GLU A 46 N ARG A 38 SHEET 6 AA2 6 THR A 58 TYR A 60 -1 O THR A 59 N VAL A 50 SHEET 1 AA3 5 VAL B 240 GLN B 243 0 SHEET 2 AA3 5 GLY B 271 ILE B 276 -1 O ARG B 273 N GLN B 243 SHEET 3 AA3 5 VAL B 328 ARG B 334 1 O GLU B 330 N ILE B 272 SHEET 4 AA3 5 LEU B 317 ILE B 322 -1 N SER B 319 O LEU B 331 SHEET 5 AA3 5 PRO B 297 ASP B 304 -1 N LYS B 303 O HIS B 318 SHEET 1 AA4 4 LEU C 4 SER C 7 0 SHEET 2 AA4 4 SER C 17 ALA C 24 -1 O SER C 21 N SER C 7 SHEET 3 AA4 4 THR C 78 ASN C 84 -1 O MET C 83 N LEU C 18 SHEET 4 AA4 4 PHE C 68 ASP C 73 -1 N THR C 69 O GLN C 82 SHEET 1 AA5 6 LEU C 11 VAL C 12 0 SHEET 2 AA5 6 THR C 109 VAL C 113 1 O THR C 112 N VAL C 12 SHEET 3 AA5 6 ALA C 92 LYS C 98 -1 N ALA C 92 O VAL C 111 SHEET 4 AA5 6 ALA C 33 GLN C 39 -1 N ALA C 35 O ASN C 97 SHEET 5 AA5 6 GLU C 46 ALA C 52 -1 O ILE C 51 N MET C 34 SHEET 6 AA5 6 THR C 58 TYR C 60 -1 O THR C 59 N VAL C 50 SHEET 1 AA6 5 VAL D 240 ALA D 246 0 SHEET 2 AA6 5 TYR D 270 ILE D 276 -1 O GLY D 271 N ARG D 245 SHEET 3 AA6 5 VAL D 328 ARG D 334 1 O GLU D 330 N ILE D 272 SHEET 4 AA6 5 LEU D 317 ILE D 322 -1 N SER D 319 O LEU D 331 SHEET 5 AA6 5 PRO D 297 ASP D 304 -1 N LYS D 303 O HIS D 318 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.02 SSBOND 2 CYS C 22 CYS C 96 1555 1555 2.03 LINK NE2 HIS B 57 MN MN B 401 1555 1555 2.23 LINK NE2 HIS B 82 MN MN B 401 1555 1555 2.69 LINK OD2 ASP B 148 MN MN B 401 1555 1555 2.23 LINK NE2 HIS D 57 MN MN D 401 1555 1555 2.40 LINK NE2 HIS D 82 MN MN D 401 1555 1555 2.17 LINK OD1 ASP D 148 MN MN D 401 1555 1555 2.18 CRYST1 197.427 88.299 62.521 90.00 101.88 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005065 0.000000 0.001066 0.00000 SCALE2 0.000000 0.011325 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016345 0.00000 CONECT 128 674 CONECT 674 128 CONECT 1248 6264 CONECT 1416 6264 CONECT 1833 6264 CONECT 3313 3855 CONECT 3855 3313 CONECT 4330 6265 CONECT 4499 6265 CONECT 4920 6265 CONECT 6264 1248 1416 1833 CONECT 6265 4330 4499 4920 MASTER 517 0 2 38 30 0 0 6 6261 4 12 74 END