HEADER CELL CYCLE 04-AUG-25 9S7L TITLE STRUCTURE OF CENTROSOMIN (CNN) PARTIAL PREM DOMAIN 490-579AA OF TITLE 2 DROSOPHILA MELANOGASTER- S567A S571A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: CENTROSOMIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN ARROW; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: CNN 2A MUTANT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: CNN, ARR, CG4832; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CENTROSOME, CENTROSOMIN, HELIX, MUTANT, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR N.MOHAMAD,J.RAFF,S.M.LEA,S.JOHNSON REVDAT 1 19-AUG-26 9S7L 0 JRNL AUTH N.MOHAMAD,J.RAFF,S.M.LEA,S.JOHNSON JRNL TITL STRUCTURE OF CENTROSOMIN PREM DOMAIN 490-579 OF DROSOPHILA JRNL TITL 2 MELANOGASTER (CNN)- S567A S571A MUTANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 14590 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 742 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4500 - 3.4200 1.00 2785 154 0.1812 0.2179 REMARK 3 2 3.4200 - 2.7100 1.00 2770 133 0.2870 0.3683 REMARK 3 3 2.7100 - 2.3700 1.00 2768 152 0.3320 0.3296 REMARK 3 4 2.3700 - 2.1500 1.00 2753 161 0.2783 0.3307 REMARK 3 5 2.1500 - 2.0000 1.00 2772 142 0.3341 0.3469 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 43.278 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1313 REMARK 3 ANGLE : 0.875 1769 REMARK 3 CHIRALITY : 0.035 213 REMARK 3 PLANARITY : 0.008 221 REMARK 3 DIHEDRAL : 19.395 495 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -27.3543 21.5555 -1.1645 REMARK 3 T TENSOR REMARK 3 T11: 0.4967 T22: 0.4792 REMARK 3 T33: 0.4791 T12: -0.0112 REMARK 3 T13: 0.0797 T23: -0.0338 REMARK 3 L TENSOR REMARK 3 L11: 0.9069 L22: 2.4431 REMARK 3 L33: 0.2614 L12: 0.1607 REMARK 3 L13: -0.0520 L23: -0.1150 REMARK 3 S TENSOR REMARK 3 S11: -0.1829 S12: 0.1140 S13: -0.2824 REMARK 3 S21: -0.0866 S22: 0.0606 S23: -0.0848 REMARK 3 S31: 0.1939 S32: -0.1068 S33: 0.1189 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9S7L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-AUG-25. REMARK 100 THE DEPOSITION ID IS D_1292147975. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-23 REMARK 200 TEMPERATURE (KELVIN) : 277.15 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14638 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 46.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.09 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.32 M POTASSIUM/SODIUM PHOSPHATE PH REMARK 280 7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.89667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.79333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.84500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 89.74167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 17.94833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 487 REMARK 465 PRO A 488 REMARK 465 ASP A 489 REMARK 465 ASP A 490 REMARK 465 GLN A 491 REMARK 465 GLN A 492 REMARK 465 ASN A 493 REMARK 465 LEU A 578 REMARK 465 ASN A 579 REMARK 465 GLY B 487 REMARK 465 PRO B 488 REMARK 465 ASP B 489 REMARK 465 ASP B 490 REMARK 465 GLN B 491 REMARK 465 GLN B 492 REMARK 465 ASN B 493 REMARK 465 SER B 494 REMARK 465 ASN B 575 REMARK 465 MET B 576 REMARK 465 THR B 577 REMARK 465 LEU B 578 REMARK 465 ASN B 579 REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 708 DISTANCE = 6.38 ANGSTROMS DBREF 9S7L A 489 579 UNP P54623 CNN_DROME 661 751 DBREF 9S7L B 489 579 UNP P54623 CNN_DROME 661 751 SEQADV 9S7L GLY A 487 UNP P54623 EXPRESSION TAG SEQADV 9S7L PRO A 488 UNP P54623 EXPRESSION TAG SEQADV 9S7L ILE A 522 UNP P54623 VAL 694 CONFLICT SEQADV 9S7L ALA A 567 UNP P54623 SER 739 ENGINEERED MUTATION SEQADV 9S7L ALA A 571 UNP P54623 SER 743 ENGINEERED MUTATION SEQADV 9S7L GLY B 487 UNP P54623 EXPRESSION TAG SEQADV 9S7L PRO B 488 UNP P54623 EXPRESSION TAG SEQADV 9S7L ILE B 522 UNP P54623 VAL 694 CONFLICT SEQADV 9S7L ALA B 567 UNP P54623 SER 739 ENGINEERED MUTATION SEQADV 9S7L ALA B 571 UNP P54623 SER 743 ENGINEERED MUTATION SEQRES 1 A 93 GLY PRO ASP ASP GLN GLN ASN SER ALA VAL ILE GLY GLN SEQRES 2 A 93 LEU ARG LEU GLU LEU GLN GLN ALA ARG THR GLU VAL GLU SEQRES 3 A 93 THR ALA ASP LYS TRP ARG LEU GLU CYS ILE ASP VAL CYS SEQRES 4 A 93 SER VAL LEU THR ASN ARG LEU GLU GLU LEU ALA GLY PHE SEQRES 5 A 93 LEU ASN SER LEU LEU LYS HIS LYS ASP VAL LEU GLY VAL SEQRES 6 A 93 LEU ALA ALA ASP ARG ARG ASN ALA MET ARG LYS ALA VAL SEQRES 7 A 93 ASP ARG ALA LEU ASP LEU ALA LYS SER LEU ASN MET THR SEQRES 8 A 93 LEU ASN SEQRES 1 B 93 GLY PRO ASP ASP GLN GLN ASN SER ALA VAL ILE GLY GLN SEQRES 2 B 93 LEU ARG LEU GLU LEU GLN GLN ALA ARG THR GLU VAL GLU SEQRES 3 B 93 THR ALA ASP LYS TRP ARG LEU GLU CYS ILE ASP VAL CYS SEQRES 4 B 93 SER VAL LEU THR ASN ARG LEU GLU GLU LEU ALA GLY PHE SEQRES 5 B 93 LEU ASN SER LEU LEU LYS HIS LYS ASP VAL LEU GLY VAL SEQRES 6 B 93 LEU ALA ALA ASP ARG ARG ASN ALA MET ARG LYS ALA VAL SEQRES 7 B 93 ASP ARG ALA LEU ASP LEU ALA LYS SER LEU ASN MET THR SEQRES 8 B 93 LEU ASN HET PO4 A 601 5 HET PO4 A 602 5 HET PO4 A 603 5 HET PO4 B 901 5 HET PO4 B 902 5 HET PO4 B 903 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 6(O4 P 3-) FORMUL 9 HOH *20(H2 O) HELIX 1 AA1 SER A 494 LYS A 544 1 51 HELIX 2 AA2 HIS A 545 GLY A 550 1 6 HELIX 3 AA3 ALA A 553 ASN A 575 1 23 HELIX 4 AA4 VAL B 496 LEU B 543 1 48 HELIX 5 AA5 HIS B 545 GLY B 550 1 6 HELIX 6 AA6 ALA B 553 LEU B 574 1 22 CRYST1 59.450 59.450 107.690 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016821 0.009712 0.000000 0.00000 SCALE2 0.000000 0.019423 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009286 0.00000 CONECT 1286 1287 1288 1289 1290 CONECT 1287 1286 CONECT 1288 1286 CONECT 1289 1286 CONECT 1290 1286 CONECT 1291 1292 1293 1294 1295 CONECT 1292 1291 CONECT 1293 1291 CONECT 1294 1291 CONECT 1295 1291 CONECT 1296 1297 1298 1299 1300 CONECT 1297 1296 CONECT 1298 1296 CONECT 1299 1296 CONECT 1300 1296 CONECT 1301 1302 1303 1304 1305 CONECT 1302 1301 CONECT 1303 1301 CONECT 1304 1301 CONECT 1305 1301 CONECT 1306 1307 1308 1309 1310 CONECT 1307 1306 CONECT 1308 1306 CONECT 1309 1306 CONECT 1310 1306 CONECT 1311 1312 1313 1314 1315 CONECT 1312 1311 CONECT 1313 1311 CONECT 1314 1311 CONECT 1315 1311 MASTER 256 0 6 6 0 0 0 6 1333 2 30 16 END