HEADER HYDROLASE 05-AUG-25 9S8Y TITLE AMUC1074_S1_11 IN COMPLEX WITH N-ACETYL D-GLUCOSAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULFATASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AKKERMANSIA MUCINIPHILA ATCC BAA-835; SOURCE 3 ORGANISM_TAXID: 349741; SOURCE 4 GENE: AMUC_1074; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CARBOHYDRATE SULFATASE, MUCIN, AKKERMANSIA MUCINIPHILA, SULFATION, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.DEY,A.CARTMELL REVDAT 1 03-JUN-26 9S8Y 0 JRNL AUTH D.DEY,N.D.SALMAN,C.W.E.TOMLINSON,S.GUGEL,J.CHUNSHENG,G.RABA, JRNL AUTH 2 M.NILSSON,Z.MCIVER,A.SIMPKIN,M.DAVY,D.J.RIGDEN,M.CZJZEK, JRNL AUTH 3 D.P.BYRNE,A.CASE,C.BAUMANN,G.S.A.WRIGHT,S.VAN DER POST, JRNL AUTH 4 E.C.MARTENS,E.A.YATES,L.DAVEY,A.S.LUIS,A.CARTMELL JRNL TITL THE ROLE OF AKKERMANSIA MUCINIPHILA SULFATASES IN COLONIC JRNL TITL 2 MUCIN UTILISATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 (REFMACAT 0.4.105) REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 146929 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.906 REMARK 3 FREE R VALUE TEST SET COUNT : 7209 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.38 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.42 REMARK 3 REFLECTION IN BIN (WORKING SET) : 10261 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 537 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4218 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 437 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.32800 REMARK 3 B22 (A**2) : -1.32800 REMARK 3 B33 (A**2) : 2.65500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.047 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.048 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.237 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4618 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4260 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6274 ; 1.898 ; 1.829 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9869 ; 0.675 ; 1.784 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 567 ; 7.021 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 30 ; 6.740 ; 5.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 780 ;12.709 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 632 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5533 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1087 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 888 ; 0.225 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 26 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2202 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 321 ; 0.125 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.144 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2205 ; 1.741 ; 2.099 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2206 ; 1.741 ; 2.099 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2793 ; 2.452 ; 3.775 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2794 ; 2.452 ; 3.775 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2413 ; 3.073 ; 2.400 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2414 ; 3.072 ; 2.402 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3481 ; 4.635 ; 4.235 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3482 ; 4.634 ; 4.237 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9S8Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-AUG-25. REMARK 100 THE DEPOSITION ID IS D_1292149976. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 146947 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.380 REMARK 200 RESOLUTION RANGE LOW (A) : 71.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS E9: 30 % PRECIPITANT MIX 1 REMARK 280 (40% V/V PEG 500* MME; 20 % W/V PEG 20000) 0.1 M BUFFER SYSTEM 3 REMARK 280 PH 8.5 (TRIS (BASE); BICINE) 0.12 M ETHYLENE GLYCOLS (0.3M REMARK 280 DIETHYLENE GLYCOL; 0.3M TRIETHYLENE GLYCOL; 0.3M TETRAETHYLENE REMARK 280 GLYCOL; 0.3M PENTAETHYLENE GLYCOL) 20 MG/ML AMUC1074 WITH 100 MM REMARK 280 N-ACETYL D-GLUCOSAMINE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 65.00500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 65.00500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.13500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 65.00500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.56750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 65.00500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.70250 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 65.00500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 65.00500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.13500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 65.00500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 64.70250 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 65.00500 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 21.56750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 73 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 TYR A 416 CB - CG - CD1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 78 107.63 179.22 REMARK 500 CSO A 81 -70.98 -52.51 REMARK 500 GLN A 104 -165.37 -76.54 REMARK 500 TRP A 131 -68.86 -109.95 REMARK 500 GLU A 134 -51.02 77.22 REMARK 500 HIS A 231 43.25 -98.12 REMARK 500 TYR A 278 54.88 -93.42 REMARK 500 TYR A 278 54.88 -143.14 REMARK 500 PRO A 319 -38.71 -37.66 REMARK 500 MET A 373 50.55 -102.90 REMARK 500 ASP A 380 -157.21 72.03 REMARK 500 LYS A 381 -130.30 -142.88 REMARK 500 ARG A 382 -46.74 79.22 REMARK 500 TRP A 397 86.82 -156.15 REMARK 500 HIS A 468 -11.20 79.03 REMARK 500 ASP A 500 55.96 -146.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 382 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU A 316 -10.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 605 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 40 OD1 REMARK 620 2 ASP A 41 OD1 95.1 REMARK 620 3 CSO A 81 OD 107.3 86.3 REMARK 620 4 ASP A 368 OD1 100.4 105.0 149.0 REMARK 620 5 ASP A 368 OD2 88.5 158.0 113.3 53.1 REMARK 620 6 GLN A 369 OE1 177.0 87.7 71.5 80.1 89.4 REMARK 620 N 1 2 3 4 5 DBREF 9S8Y A 30 552 UNP B2UR15 B2UR15_AKKM8 30 552 SEQADV 9S8Y GLU A 188 UNP B2UR15 GLY 188 CONFLICT SEQADV 9S8Y GLY A 490 UNP B2UR15 ASP 490 CONFLICT SEQRES 1 A 523 LYS LYS PRO ASN ILE LEU PHE ILE ILE THR ASP ASP HIS SEQRES 2 A 523 ALA TYR GLN THR LEU GLY THR GLY ASN ASN ASP SER PRO SEQRES 3 A 523 VAL ALA LEU PRO ASN PHE ASN LYS LEU GLY ARG GLN GLY SEQRES 4 A 523 MET VAL PHE ASP ARG SER TYR CYS ALA ASN SER LEU CSO SEQRES 5 A 523 GLY PRO SER ARG ALA CYS ILE LEU THR GLY ARG HIS SER SEQRES 6 A 523 HIS MET ASN GLY PHE VAL PHE ASN GLY GLN ARG PRO LEU SEQRES 7 A 523 ASP GLY SER GLN PRO THR TYR PRO LYS MET LEU GLN LYS SEQRES 8 A 523 ALA GLY TYR GLN THR GLY LEU PHE GLY LYS TRP HIS LEU SEQRES 9 A 523 GLU SER ASP PRO THR GLY PHE ASP THR TRP GLU ILE PHE SEQRES 10 A 523 PRO GLY GLN GLY SER TYR TYR ASN PRO ASP PHE ILE SER SEQRES 11 A 523 LEU LYS PRO ASP GLY LYS ARG GLN THR LYS ARG PHE PRO SEQRES 12 A 523 GLY TYR ALA THR ASP VAL VAL THR ASP LYS SER ILE GLN SEQRES 13 A 523 TRP LEU GLU ASN ARG ASP LYS ASN LYS PRO PHE LEU LEU SEQRES 14 A 523 VAL VAL GLY HIS LYS ALA PRO HIS ARG ALA TRP CYS PRO SEQRES 15 A 523 ALA LEU ARG HIS LEU GLY LYS VAL ASP THR SER SER MET SEQRES 16 A 523 THR PRO PRO ALA ASN PHE HIS ASP ASP TYR ALA ASN ARG SEQRES 17 A 523 PRO GLU PHE LEU LYS LYS ASN GLN GLN THR VAL ALA ASN SEQRES 18 A 523 HIS MET ALA ILE TYR SER ASP LEU LYS VAL LEU LYS ASP SEQRES 19 A 523 GLN VAL PRO GLU GLU MET ARG LYS SER ILE VAL SER PRO SEQRES 20 A 523 GLY TYR GLY TRP ASP LEU GLY GLU LEU ASN ARG MET THR SEQRES 21 A 523 PRO GLU GLU LYS LYS THR TRP THR ASP TYR TYR ALA LYS SEQRES 22 A 523 ARG THR LYS SER LEU VAL ASP GLY MET LYS SER GLY LYS SEQRES 23 A 523 LEU LYS ASP PRO LYS ALA PHE ALA GLU TRP LYS TRP HIS SEQRES 24 A 523 ALA TYR MET GLU ASP TYR LEU GLY CYS LEU LEU SER VAL SEQRES 25 A 523 ASP ASP SER ILE GLY ARG LEU MET GLU TYR LEU ASP LYS SEQRES 26 A 523 GLU GLY ILE ALA LYS ASP THR LEU VAL ILE TYR CYS GLY SEQRES 27 A 523 ASP GLN GLY PHE TYR MET GLY GLU HIS GLY MET TYR ASP SEQRES 28 A 523 LYS ARG TRP ILE PHE GLU GLU SER LEU ARG MET PRO LEU SEQRES 29 A 523 ILE MET ARG TRP PRO GLY LYS ILE PRO ALA GLY ILE ARG SEQRES 30 A 523 ASN ASN THR MET VAL GLN ASN ILE ASP TYR ALA PRO THR SEQRES 31 A 523 ILE VAL SER ALA ALA GLY ALA ASP THR PRO GLU ASN MET SEQRES 32 A 523 ASN THR PHE GLN GLY VAL SER LEU LEU PRO THR ALA PHE SEQRES 33 A 523 THR GLY LYS THR PRO ASP ASN TRP ARG ASP ALA ILE TYR SEQRES 34 A 523 TYR CYS PHE TYR GLU ASN PRO GLY GLU HIS ASN ALA PRO SEQRES 35 A 523 ARG HIS ASP GLY ILE ARG THR ASP ARG TYR THR LEU SER SEQRES 36 A 523 TYR ILE TRP THR SER GLY GLU TRP MET LEU PHE ASP MET SEQRES 37 A 523 LYS LYS ASP PRO MET GLN MET LYS ASN VAL ILE ASP ASP SEQRES 38 A 523 PRO ALA TYR LYS THR THR VAL GLU GLN LEU LYS LYS ARG SEQRES 39 A 523 TYR HIS GLU LEU ARG LYS THR TYR LYS VAL PRO GLU ASN SEQRES 40 A 523 SER PRO GLY GLY LYS GLY THR PRO ILE PRO LYS PHE ASP SEQRES 41 A 523 ALA SER TRP MODRES 9S8Y CSO A 81 CYS MODIFIED RESIDUE HET CSO A 81 28 HET NAG A 601 15 HET NDG A 602 15 HET 1PE A 603 16 HET ETE A 604 14 HET CA A 605 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM ETE 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN NDG N-ACETYL-ALPHA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NDG ALPHA-D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2- HETSYN 3 NDG ACETAMIDO-2-DEOXY-GLUCOSE; 2-(ACETYLAMINO)-2-DEOXY-A- HETSYN 4 NDG D-GLUCOPYRANOSE HETSYN 1PE PEG400 FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 NAG C8 H15 N O6 FORMUL 3 NDG C8 H15 N O6 FORMUL 4 1PE C10 H22 O6 FORMUL 5 ETE C9 H20 O5 FORMUL 6 CA CA 2+ FORMUL 7 HOH *437(H2 O) HELIX 1 AA1 ALA A 43 LEU A 47 5 5 HELIX 2 AA2 LEU A 58 GLY A 68 1 11 HELIX 3 AA3 LEU A 80 GLY A 91 1 12 HELIX 4 AA4 HIS A 93 GLY A 98 1 6 HELIX 5 AA5 THR A 113 ALA A 121 1 9 HELIX 6 AA6 TYR A 174 ASN A 189 1 16 HELIX 7 AA7 ALA A 212 LEU A 216 5 5 HELIX 8 AA8 ASP A 220 MET A 224 5 5 HELIX 9 AA9 PRO A 238 ASN A 244 5 7 HELIX 10 AB1 LEU A 261 VAL A 265 5 5 HELIX 11 AB2 PRO A 266 GLU A 268 5 3 HELIX 12 AB3 MET A 269 VAL A 274 1 6 HELIX 13 AB4 LEU A 282 MET A 288 5 7 HELIX 14 AB5 THR A 289 GLY A 314 1 26 HELIX 15 AB6 LYS A 315 LYS A 317 5 3 HELIX 16 AB7 ASP A 318 GLU A 355 1 38 HELIX 17 AB8 ILE A 357 LYS A 359 5 3 HELIX 18 AB9 GLY A 374 MET A 378 5 5 HELIX 19 AC1 PHE A 385 ARG A 390 1 6 HELIX 20 AC2 ASP A 415 ALA A 424 1 10 HELIX 21 AC3 THR A 428 ASN A 433 1 6 HELIX 22 AC4 LEU A 440 PHE A 445 1 6 HELIX 23 AC5 GLY A 466 ALA A 470 5 5 HELIX 24 AC6 ASP A 510 ALA A 512 5 3 HELIX 25 AC7 TYR A 513 TYR A 531 1 19 SHEET 1 AA1 8 THR A 142 ILE A 145 0 SHEET 2 AA1 8 GLN A 124 GLY A 129 1 N GLY A 129 O GLU A 144 SHEET 3 AA1 8 PHE A 196 GLY A 201 1 O GLY A 201 N PHE A 128 SHEET 4 AA1 8 ASN A 33 THR A 39 1 N PHE A 36 O LEU A 198 SHEET 5 AA1 8 THR A 361 GLY A 367 1 O LEU A 362 N ASN A 33 SHEET 6 AA1 8 LEU A 393 ARG A 396 -1 O ARG A 396 N VAL A 363 SHEET 7 AA1 8 MET A 69 PHE A 71 -1 N MET A 69 O MET A 395 SHEET 8 AA1 8 ILE A 405 ASN A 407 1 O ASN A 407 N VAL A 70 SHEET 1 AA2 2 SER A 74 TYR A 75 0 SHEET 2 AA2 2 VAL A 411 GLN A 412 1 O VAL A 411 N TYR A 75 SHEET 1 AA3 2 ASP A 156 LEU A 160 0 SHEET 2 AA3 2 ARG A 166 ARG A 170 -1 O LYS A 169 N PHE A 157 SHEET 1 AA4 4 ALA A 456 PHE A 461 0 SHEET 2 AA4 4 HIS A 473 THR A 478 -1 O HIS A 473 N PHE A 461 SHEET 3 AA4 4 TYR A 481 ILE A 486 -1 O TYR A 481 N THR A 478 SHEET 4 AA4 4 GLU A 491 ASP A 496 -1 O GLU A 491 N ILE A 486 LINK C LEU A 80 N ACSO A 81 1555 1555 1.33 LINK C LEU A 80 N BCSO A 81 1555 1555 1.33 LINK C LEU A 80 N CCSO A 81 1555 1555 1.34 LINK C LEU A 80 N DCSO A 81 1555 1555 1.34 LINK C ACSO A 81 N GLY A 82 1555 1555 1.33 LINK C BCSO A 81 N GLY A 82 1555 1555 1.33 LINK C CCSO A 81 N GLY A 82 1555 1555 1.33 LINK C DCSO A 81 N GLY A 82 1555 1555 1.34 LINK OD1 ASP A 40 CA CA A 605 1555 1555 2.27 LINK OD1 ASP A 41 CA CA A 605 1555 1555 2.22 LINK OD BCSO A 81 CA CA A 605 1555 1555 2.23 LINK OD1 ASP A 368 CA CA A 605 1555 1555 2.50 LINK OD2 ASP A 368 CA CA A 605 1555 1555 2.48 LINK OE1 GLN A 369 CA CA A 605 1555 1555 2.39 CISPEP 1 ALA A 204 PRO A 205 0 -14.76 CISPEP 2 ARG A 207 ALA A 208 0 13.08 CISPEP 3 ASN A 464 PRO A 465 0 0.57 CISPEP 4 SER A 537 PRO A 538 0 9.61 CRYST1 130.010 130.010 86.270 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007692 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007692 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011592 0.00000 CONECT 109 4473 CONECT 117 4473 CONECT 429 435 436 437 438 CONECT 435 429 439 CONECT 436 429 440 CONECT 437 429 441 CONECT 438 429 442 CONECT 439 435 443 451 CONECT 440 436 444 452 CONECT 441 437 445 453 CONECT 442 438 446 454 CONECT 443 439 447 CONECT 444 440 448 CONECT 445 441 449 CONECT 446 442 450 CONECT 447 443 459 CONECT 448 444 460 CONECT 449 445 461 CONECT 450 446 462 CONECT 451 439 455 463 CONECT 452 440 456 463 CONECT 453 441 457 463 CONECT 454 442 458 463 CONECT 455 451 CONECT 456 452 CONECT 457 453 CONECT 458 454 CONECT 459 447 CONECT 460 448 4473 CONECT 461 449 CONECT 462 450 CONECT 463 451 452 453 454 CONECT 2836 4473 CONECT 2837 4473 CONECT 2845 4473 CONECT 4413 4414 4422 4425 CONECT 4414 4413 4415 4421 CONECT 4415 4414 4416 4423 CONECT 4416 4415 4417 4424 CONECT 4417 4416 4418 4425 CONECT 4418 4417 4426 CONECT 4419 4420 4421 4427 CONECT 4420 4419 CONECT 4421 4414 4419 CONECT 4422 4413 CONECT 4423 4415 CONECT 4424 4416 CONECT 4425 4413 4417 CONECT 4426 4418 CONECT 4427 4419 CONECT 4428 4429 4436 4442 CONECT 4429 4428 4430 4441 CONECT 4430 4429 4431 4437 CONECT 4431 4430 4432 4438 CONECT 4432 4431 4433 4436 CONECT 4433 4432 4439 CONECT 4434 4435 4440 4441 CONECT 4435 4434 CONECT 4436 4428 4432 CONECT 4437 4430 CONECT 4438 4431 CONECT 4439 4433 CONECT 4440 4434 CONECT 4441 4429 4434 CONECT 4442 4428 CONECT 4443 4444 CONECT 4444 4443 4445 CONECT 4445 4444 4446 CONECT 4446 4445 4448 CONECT 4447 4448 4449 CONECT 4448 4446 4447 CONECT 4449 4447 4451 CONECT 4450 4451 4452 CONECT 4451 4449 4450 CONECT 4452 4450 4454 CONECT 4453 4454 4455 CONECT 4454 4452 4453 CONECT 4455 4453 4457 CONECT 4456 4457 4458 CONECT 4457 4455 4456 CONECT 4458 4456 CONECT 4459 4460 CONECT 4460 4459 4461 CONECT 4461 4460 4462 CONECT 4462 4461 4464 CONECT 4463 4464 4465 CONECT 4464 4462 4463 CONECT 4465 4463 4467 CONECT 4466 4467 4468 CONECT 4467 4465 4466 CONECT 4468 4466 4470 CONECT 4469 4470 4471 CONECT 4470 4468 4469 CONECT 4471 4469 4472 CONECT 4472 4471 CONECT 4473 109 117 460 2836 CONECT 4473 2837 2845 MASTER 357 0 6 25 16 0 0 6 4716 1 97 41 END