HEADER VIRAL PROTEIN 07-AUG-25 9SAT TITLE MONOCLONAL ANTIBODIES FROM COVID-19 CONVALESCENT PATIENTS TARGET TITLE 2 CRYPTIC EPITOPES FOR UNIVERSAL SARS-COV-2 NEUTRALIZATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAU-1109 FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TAU-1109 FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: SPIKE PROTEIN S1; COMPND 11 CHAIN: R; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL: EXPI293F; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM_CELL: EXPI293F; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 15 2; SOURCE 16 ORGANISM_TAXID: 2697049; SOURCE 17 GENE: S, 2; SOURCE 18 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 20 EXPRESSION_SYSTEM_CELL: S2 KEYWDS IMMUNE COMPLEX, SARS-COV-2, RECEPTOR BINDING DOMAIN, NEUTRALIZING KEYWDS 2 ANTIBODY, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.DESSAU,A.HARIT REVDAT 1 18-MAR-26 9SAT 0 JRNL AUTH A.HARIT,M.MOR,R.YEFET,L.S.IZHAKI-TAVOR,M.GAL-TANAMY, JRNL AUTH 2 N.T.FREUND,M.DESSAU JRNL TITL MONOCLONAL ANTIBODIES FROM COVID-19 CONVALESCENT PATIENTS JRNL TITL 2 TARGET CRYPTIC EPITOPES FOR UNIVERSAL SARS-COV-2 JRNL TITL 3 NEUTRALIZATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX V1.21 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 93.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 3 NUMBER OF REFLECTIONS : 28734 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1416 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 93.6900 - 5.5200 0.96 3031 169 0.2216 0.2594 REMARK 3 2 5.5200 - 4.3800 0.96 2940 156 0.1721 0.1984 REMARK 3 3 4.3800 - 3.8300 0.88 2660 137 0.1930 0.2314 REMARK 3 4 3.8300 - 3.4800 0.88 2663 135 0.2174 0.2551 REMARK 3 5 3.4800 - 3.2300 0.87 2624 111 0.2481 0.3289 REMARK 3 6 3.2300 - 3.0400 0.99 2930 155 0.2620 0.3316 REMARK 3 7 3.0400 - 2.8800 0.98 2935 147 0.2685 0.3191 REMARK 3 8 2.8800 - 2.7600 0.96 2874 131 0.2751 0.2969 REMARK 3 9 2.7600 - 2.6500 0.72 2143 133 0.2827 0.3318 REMARK 3 10 2.6500 - 2.5600 0.86 2516 142 0.2881 0.3597 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4968 REMARK 3 ANGLE : 1.455 6770 REMARK 3 CHIRALITY : 0.078 746 REMARK 3 PLANARITY : 0.020 877 REMARK 3 DIHEDRAL : 14.798 1776 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 61.8081 32.3404 83.4138 REMARK 3 T TENSOR REMARK 3 T11: 0.0082 T22: 0.0216 REMARK 3 T33: 0.0085 T12: -0.0322 REMARK 3 T13: -0.0549 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 0.0044 L22: 0.0017 REMARK 3 L33: 0.0044 L12: 0.0040 REMARK 3 L13: 0.0212 L23: -0.0050 REMARK 3 S TENSOR REMARK 3 S11: -0.0436 S12: 0.0077 S13: -0.0092 REMARK 3 S21: 0.0056 S22: -0.0141 S23: 0.0102 REMARK 3 S31: -0.0100 S32: 0.0161 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9SAT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-AUG-25. REMARK 100 THE DEPOSITION ID IS D_1292150011. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8371 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : TRUNCATE REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28734 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.560 REMARK 200 RESOLUTION RANGE LOW (A) : 93.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.06710 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.23200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.650 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M ZINC ACETATE DEHYDRATE, 0.1M REMARK 280 SODIUM CACODYLATE TRIHYDRATE, 15% PEG 8000, PH 5.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.63200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 112.74950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.49800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 112.74950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.63200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.49800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.63200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.49800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 112.74950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.49800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.63200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 112.74950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN L 301 LIES ON A SPECIAL POSITION. REMARK 375 HOH L 408 LIES ON A SPECIAL POSITION. REMARK 375 HOH L 448 LIES ON A SPECIAL POSITION. REMARK 375 HOH L 475 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS H 141 REMARK 465 SER H 142 REMARK 465 THR H 143 REMARK 465 SER H 144 REMARK 465 GLY H 145 REMARK 465 GLY H 146 REMARK 465 GLU L 1 REMARK 465 GLU L 215 REMARK 465 CYS L 216 REMARK 465 ARG R 319 REMARK 465 VAL R 320 REMARK 465 GLN R 321 REMARK 465 PRO R 322 REMARK 465 THR R 323 REMARK 465 GLU R 324 REMARK 465 SER R 325 REMARK 465 ILE R 326 REMARK 465 VAL R 327 REMARK 465 ARG R 328 REMARK 465 PHE R 329 REMARK 465 PRO R 330 REMARK 465 ASN R 331 REMARK 465 ILE R 332 REMARK 465 LYS R 528 REMARK 465 LYS R 529 REMARK 465 SER R 530 REMARK 465 THR R 531 REMARK 465 ASN R 532 REMARK 465 LEU R 533 REMARK 465 VAL R 534 REMARK 465 LYS R 535 REMARK 465 ASN R 536 REMARK 465 LYS R 537 REMARK 465 CYS R 538 REMARK 465 VAL R 539 REMARK 465 ASN R 540 REMARK 465 PHE R 541 REMARK 465 GLY R 542 REMARK 465 GLY R 543 REMARK 465 ARG R 544 REMARK 465 LEU R 545 REMARK 465 GLU R 546 REMARK 465 VAL R 547 REMARK 465 LEU R 548 REMARK 465 PHE R 549 REMARK 465 GLN R 550 REMARK 465 GLY R 551 REMARK 465 PRO R 552 REMARK 465 GLY R 553 REMARK 465 SER R 554 REMARK 465 ALA R 555 REMARK 465 TRP R 556 REMARK 465 SER R 557 REMARK 465 HIS R 558 REMARK 465 PRO R 559 REMARK 465 GLN R 560 REMARK 465 PHE R 561 REMARK 465 GLU R 562 REMARK 465 LYS R 563 REMARK 465 GLY R 564 REMARK 465 GLY R 565 REMARK 465 GLY R 566 REMARK 465 SER R 567 REMARK 465 GLY R 568 REMARK 465 GLY R 569 REMARK 465 GLY R 570 REMARK 465 GLY R 571 REMARK 465 SER R 572 REMARK 465 GLY R 573 REMARK 465 GLY R 574 REMARK 465 SER R 575 REMARK 465 ALA R 576 REMARK 465 TRP R 577 REMARK 465 SER R 578 REMARK 465 HIS R 579 REMARK 465 PRO R 580 REMARK 465 GLN R 581 REMARK 465 PHE R 582 REMARK 465 GLU R 583 REMARK 465 LYS R 584 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLN H 65 O HOH H 401 2.14 REMARK 500 O ASP L 124 O HOH L 401 2.17 REMARK 500 ND1 HIS H 114 O HOH H 402 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH L 480 O HOH L 480 6655 2.00 REMARK 500 OE2 GLU L 79 NE2 HIS R 519 6655 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU H 190 134.86 -175.73 REMARK 500 ASP L 32 44.37 -144.78 REMARK 500 ALA L 51 -40.75 64.51 REMARK 500 ASN L 93 155.11 76.50 REMARK 500 LYS L 192 -47.62 -130.44 REMARK 500 ASN R 343 33.46 -97.58 REMARK 500 PHE R 377 70.63 -154.99 REMARK 500 ASN R 422 -55.75 -135.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG L 91 0.13 SIDE CHAIN REMARK 500 ARG L 213 0.17 SIDE CHAIN REMARK 500 ARG R 346 0.09 SIDE CHAIN REMARK 500 ARG R 466 0.08 SIDE CHAIN REMARK 500 ARG R 509 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 TRP R 436 -11.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH L 483 DISTANCE = 7.51 ANGSTROMS REMARK 525 HOH R 682 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH R 683 DISTANCE = 8.27 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN L 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS H 176 NE2 REMARK 620 2 ASN L 139 OD1 96.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN L 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS L 53 NE2 REMARK 620 2 HIS L 53 NE2 0.0 REMARK 620 3 HOH L 475 O 118.3 118.3 REMARK 620 4 HOH L 475 O 118.3 118.3 0.0 REMARK 620 N 1 2 3 DBREF 9SAT H 1 225 PDB 9SAT 9SAT 1 225 DBREF 9SAT L 1 216 PDB 9SAT 9SAT 1 216 DBREF 9SAT R 319 541 UNP P0DTC2 SPIKE_SARS2 319 541 SEQADV 9SAT GLY R 542 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT GLY R 543 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT ARG R 544 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT LEU R 545 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT GLU R 546 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT VAL R 547 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT LEU R 548 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT PHE R 549 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT GLN R 550 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT GLY R 551 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT PRO R 552 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT GLY R 553 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT SER R 554 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT ALA R 555 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT TRP R 556 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT SER R 557 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT HIS R 558 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT PRO R 559 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT GLN R 560 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT PHE R 561 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT GLU R 562 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT LYS R 563 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT GLY R 564 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT GLY R 565 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT GLY R 566 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT SER R 567 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT GLY R 568 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT GLY R 569 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT GLY R 570 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT GLY R 571 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT SER R 572 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT GLY R 573 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT GLY R 574 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT SER R 575 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT ALA R 576 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT TRP R 577 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT SER R 578 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT HIS R 579 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT PRO R 580 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT GLN R 581 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT PHE R 582 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT GLU R 583 UNP P0DTC2 EXPRESSION TAG SEQADV 9SAT LYS R 584 UNP P0DTC2 EXPRESSION TAG SEQRES 1 H 225 GLN VAL GLN LEU VAL GLN SER GLY PRO GLU VAL LYS LYS SEQRES 2 H 225 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 225 TYR THR PHE THR SER TYR SER ILE ASN TRP VAL ARG GLN SEQRES 4 H 225 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP ILE SER SEQRES 5 H 225 THR TYR ASN GLY ASN THR ASN TYR ALA GLN ARG LEU GLN SEQRES 6 H 225 GLY ARG VAL THR MET THR THR ASP THR SER THR GLY THR SEQRES 7 H 225 ALA HIS MET GLU LEU ARG SER LEU ARG SER ASP ASP THR SEQRES 8 H 225 ALA ILE TYR TYR CYS ALA ARG GLU GLU PRO LEU TYR CYS SEQRES 9 H 225 SER GLY GLY SER CYS TYR GLU PHE GLN HIS TRP GLY GLN SEQRES 10 H 225 GLY THR LEU VAL THR VAL SER SER ALA SER THR LYS GLY SEQRES 11 H 225 PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SEQRES 12 H 225 SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP SEQRES 13 H 225 TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY SEQRES 14 H 225 ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU SEQRES 15 H 225 GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR SEQRES 16 H 225 VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS SEQRES 17 H 225 ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS SEQRES 18 H 225 LYS VAL GLU PRO SEQRES 1 L 216 GLU ILE VAL LEU THR GLN SER PRO ALA ARG LEU SER LEU SEQRES 2 L 216 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 L 216 GLN SER VAL SER SER ASP LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 216 PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR ASP ALA SER SEQRES 5 L 216 HIS ARG ALA THR GLY ILE PRO ALA ARG PHE SER GLY SER SEQRES 6 L 216 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 216 GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN ARG SEQRES 8 L 216 ILE ASN TRP PRO PRO ILE PHE THR PHE GLY PRO GLY THR SEQRES 9 L 216 LYS VAL ASP ILE LYS ARG THR VAL ALA ALA PRO SER VAL SEQRES 10 L 216 PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY SEQRES 11 L 216 THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO SEQRES 12 L 216 ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU SEQRES 13 L 216 GLN SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SEQRES 14 L 216 SER LYS ASP SER THR TYR SER LEU SER SER THR LEU THR SEQRES 15 L 216 LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA SEQRES 16 L 216 CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR SEQRES 17 L 216 LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 R 266 ARG VAL GLN PRO THR GLU SER ILE VAL ARG PHE PRO ASN SEQRES 2 R 266 ILE THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA SEQRES 3 R 266 THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG SEQRES 4 R 266 ILE SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SEQRES 5 R 266 SER ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER SEQRES 6 R 266 PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR SEQRES 7 R 266 ALA ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN SEQRES 8 R 266 ILE ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN SEQRES 9 R 266 TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA SEQRES 10 R 266 TRP ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN SEQRES 11 R 266 TYR ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU SEQRES 12 R 266 LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN SEQRES 13 R 266 ALA GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN SEQRES 14 R 266 CYS TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR SEQRES 15 R 266 ASN GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SEQRES 16 R 266 SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY SEQRES 17 R 266 PRO LYS LYS SER THR ASN LEU VAL LYS ASN LYS CYS VAL SEQRES 18 R 266 ASN PHE GLY GLY ARG LEU GLU VAL LEU PHE GLN GLY PRO SEQRES 19 R 266 GLY SER ALA TRP SER HIS PRO GLN PHE GLU LYS GLY GLY SEQRES 20 R 266 GLY SER GLY GLY GLY GLY SER GLY GLY SER ALA TRP SER SEQRES 21 R 266 HIS PRO GLN PHE GLU LYS HET ZN H 301 1 HET ZN L 301 1 HET ZN L 302 1 HETNAM ZN ZINC ION FORMUL 4 ZN 3(ZN 2+) FORMUL 7 HOH *252(H2 O) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 ARG H 87 THR H 91 5 5 HELIX 3 AA3 LYS H 213 ASN H 216 5 4 HELIX 4 AA4 GLU L 79 PHE L 83 5 5 HELIX 5 AA5 ALA L 186 HIS L 191 1 6 HELIX 6 AA6 PHE R 338 ASN R 343 1 6 HELIX 7 AA7 SER R 349 TRP R 353 5 5 HELIX 8 AA8 ASP R 364 SER R 371 1 8 HELIX 9 AA9 THR R 385 ASP R 389 5 5 HELIX 10 AB1 ASP R 405 ILE R 410 5 6 HELIX 11 AB2 GLY R 416 ASN R 422 1 7 HELIX 12 AB3 SER R 438 SER R 443 1 6 HELIX 13 AB4 GLY R 502 TYR R 505 5 4 SHEET 1 AA1 4 GLN H 3 GLN H 6 0 SHEET 2 AA1 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA1 4 THR H 78 LEU H 83 -1 O ALA H 79 N CYS H 22 SHEET 4 AA1 4 VAL H 68 ASP H 73 -1 N THR H 69 O GLU H 82 SHEET 1 AA2 6 GLU H 10 LYS H 12 0 SHEET 2 AA2 6 THR H 119 VAL H 123 1 O THR H 122 N LYS H 12 SHEET 3 AA2 6 ALA H 92 ARG H 98 -1 N ALA H 92 O VAL H 121 SHEET 4 AA2 6 ILE H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA2 6 GLU H 46 ILE H 51 -1 O MET H 48 N TRP H 36 SHEET 6 AA2 6 THR H 58 TYR H 60 -1 O ASN H 59 N TRP H 50 SHEET 1 AA3 2 GLU H 100 TYR H 103 0 SHEET 2 AA3 2 SER H 108 GLU H 111 -1 O CYS H 109 N LEU H 102 SHEET 1 AA4 4 VAL H 133 LEU H 136 0 SHEET 2 AA4 4 ALA H 148 TYR H 157 -1 O LEU H 153 N PHE H 134 SHEET 3 AA4 4 TYR H 188 VAL H 196 -1 O LEU H 190 N VAL H 154 SHEET 4 AA4 4 VAL H 175 THR H 177 -1 N HIS H 176 O VAL H 193 SHEET 1 AA5 4 VAL H 133 LEU H 136 0 SHEET 2 AA5 4 ALA H 148 TYR H 157 -1 O LEU H 153 N PHE H 134 SHEET 3 AA5 4 TYR H 188 VAL H 196 -1 O LEU H 190 N VAL H 154 SHEET 4 AA5 4 VAL H 181 LEU H 182 -1 N VAL H 181 O SER H 189 SHEET 1 AA6 3 THR H 163 TRP H 166 0 SHEET 2 AA6 3 TYR H 206 HIS H 212 -1 O ASN H 209 N SER H 165 SHEET 3 AA6 3 THR H 217 VAL H 223 -1 O LYS H 221 N CYS H 208 SHEET 1 AA7 3 THR L 5 GLN L 6 0 SHEET 2 AA7 3 ALA L 19 VAL L 29 -1 O ARG L 24 N GLN L 6 SHEET 3 AA7 3 PHE L 62 ILE L 75 -1 O LEU L 73 N LEU L 21 SHEET 1 AA8 6 ARG L 10 LEU L 13 0 SHEET 2 AA8 6 THR L 104 ILE L 108 1 O ASP L 107 N LEU L 11 SHEET 3 AA8 6 ALA L 84 ILE L 92 -1 N TYR L 86 O THR L 104 SHEET 4 AA8 6 ALA L 34 GLN L 38 -1 N ALA L 34 O GLN L 89 SHEET 5 AA8 6 ARG L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA8 6 HIS L 53 ARG L 54 -1 O HIS L 53 N TYR L 49 SHEET 1 AA9 4 ARG L 10 LEU L 13 0 SHEET 2 AA9 4 THR L 104 ILE L 108 1 O ASP L 107 N LEU L 11 SHEET 3 AA9 4 ALA L 84 ILE L 92 -1 N TYR L 86 O THR L 104 SHEET 4 AA9 4 ILE L 97 PHE L 100 -1 O ILE L 97 N ILE L 92 SHEET 1 AB1 4 SER L 116 PHE L 120 0 SHEET 2 AB1 4 THR L 131 PHE L 141 -1 O LEU L 137 N PHE L 118 SHEET 3 AB1 4 TYR L 175 SER L 184 -1 O LEU L 177 N LEU L 138 SHEET 4 AB1 4 SER L 161 VAL L 165 -1 N GLN L 162 O THR L 180 SHEET 1 AB2 3 LYS L 147 VAL L 152 0 SHEET 2 AB2 3 TYR L 194 THR L 199 -1 O GLU L 197 N GLN L 149 SHEET 3 AB2 3 VAL L 207 PHE L 211 -1 O VAL L 207 N VAL L 198 SHEET 1 AB3 5 ASN R 354 ILE R 358 0 SHEET 2 AB3 5 ASN R 394 ARG R 403 -1 O VAL R 395 N ILE R 358 SHEET 3 AB3 5 PRO R 507 GLU R 516 -1 O VAL R 512 N ASP R 398 SHEET 4 AB3 5 GLY R 431 ASN R 437 -1 N ILE R 434 O VAL R 511 SHEET 5 AB3 5 THR R 376 TYR R 380 -1 N TYR R 380 O GLY R 431 SHEET 1 AB4 3 CYS R 361 VAL R 362 0 SHEET 2 AB4 3 VAL R 524 CYS R 525 1 O CYS R 525 N CYS R 361 SHEET 3 AB4 3 CYS R 391 PHE R 392 -1 N PHE R 392 O VAL R 524 SHEET 1 AB5 2 LEU R 452 ARG R 454 0 SHEET 2 AB5 2 LEU R 492 SER R 494 -1 O GLN R 493 N TYR R 453 SHEET 1 AB6 2 TYR R 473 GLN R 474 0 SHEET 2 AB6 2 CYS R 488 TYR R 489 -1 O TYR R 489 N TYR R 473 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.06 SSBOND 2 CYS H 104 CYS H 109 1555 1555 1.99 SSBOND 3 CYS H 152 CYS H 208 1555 1555 2.04 SSBOND 4 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 5 CYS L 136 CYS L 196 1555 1555 2.06 SSBOND 6 CYS R 336 CYS R 361 1555 1555 2.05 SSBOND 7 CYS R 379 CYS R 432 1555 1555 2.05 SSBOND 8 CYS R 391 CYS R 525 1555 1555 2.05 SSBOND 9 CYS R 480 CYS R 488 1555 1555 2.04 LINK NE2 HIS H 80 ZN ZN H 301 1555 1555 2.08 LINK NE2 HIS H 176 ZN ZN L 302 1555 1555 1.87 LINK NE2 HIS L 53 ZN ZN L 301 1555 1555 2.08 LINK NE2 HIS L 53 ZN ZN L 301 1555 6655 2.08 LINK OD1 ASN L 139 ZN ZN L 302 1555 1555 1.95 LINK ZN ZN L 301 O HOH L 475 1555 1555 2.40 LINK ZN ZN L 301 O HOH L 475 1555 6655 2.40 CISPEP 1 PHE H 158 PRO H 159 0 -8.34 CISPEP 2 GLU H 160 PRO H 161 0 -1.08 CISPEP 3 TRP L 94 PRO L 95 0 5.10 CISPEP 4 TYR L 142 PRO L 143 0 10.69 CRYST1 83.264 102.996 225.499 90.00 90.00 90.00 I 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012010 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009709 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004435 0.00000 CONECT 157 745 CONECT 612 4846 CONECT 745 157 CONECT 812 838 CONECT 838 812 CONECT 1104 1518 CONECT 1288 4848 CONECT 1518 1104 CONECT 1814 2313 CONECT 2052 4847 CONECT 2313 1814 CONECT 2682 3161 CONECT 2705 4848 CONECT 3161 2682 CONECT 3327 3534 CONECT 3534 3327 CONECT 3674 4087 CONECT 3764 4833 CONECT 4087 3674 CONECT 4481 4538 CONECT 4538 4481 CONECT 4833 3764 CONECT 4846 612 CONECT 4847 2052 5009 CONECT 4848 1288 2705 CONECT 5009 4847 MASTER 452 0 3 13 55 0 0 6 5094 3 26 56 END