HEADER SUGAR BINDING PROTEIN 12-AUG-25 9SD5 TITLE CRYSTAL STRUCTURE OF THE C-TERMINALLY TRUNCATED HUMAN E574Q-PGGHG TITLE 2 MUTANT IN COMPLEX WITH GLUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN-GLUCOSYLGALACTOSYLHYDROXYLYSINE GLUCOSIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACID TREHALASE-LIKE PROTEIN 1; COMPND 5 EC: 3.2.1.107; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: DELETION OF THE LAST 45 C-TERMINAL RESIDUES (692-737) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PGGHG, ATHL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: STAR KEYWDS COLLAGEN, GLYCOSYLHYDROLASE, PGGHG, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.CASAS-FLOREZ,R.ORTEGA-GARCIA,J.SANZ-APARICIO,B.GONZALEZ REVDAT 1 11-FEB-26 9SD5 0 JRNL AUTH D.CASAS-FLOREZ,R.ORTEGA-GARCIA,P.SANZ-BENITO,B.MONTERROSO, JRNL AUTH 2 J.SANZ-APARICIO,B.GONZALEZ JRNL TITL THE STRUCTURE OF HUMAN GLUCOSIDASE PGGHG REVEALS A VERY JRNL TITL 2 SPECIFIC ACTIVE SITE ACCESSIBLE THROUGH A FLAT SURFACE FOR JRNL TITL 3 COLLAGEN APPROXIMATION. JRNL REF INT.J.BIOL.MACROMOL. V. 345 50556 2026 JRNL REFN ISSN 0141-8130 JRNL PMID 41605404 JRNL DOI 10.1016/J.IJBIOMAC.2026.150556 REMARK 2 REMARK 2 RESOLUTION. 1.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 137898 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.136 REMARK 3 FREE R VALUE : 0.157 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.051 REMARK 3 FREE R VALUE TEST SET COUNT : 6965 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.36 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.40 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9640 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 554 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5322 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 129 REMARK 3 SOLVENT ATOMS : 714 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.24000 REMARK 3 B22 (A**2) : -0.37200 REMARK 3 B33 (A**2) : 0.47800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.37400 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.047 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.049 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.031 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.752 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5955 ; 0.013 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 5441 ; 0.003 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8136 ; 2.021 ; 1.811 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12561 ; 0.690 ; 1.727 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 756 ; 6.957 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 39 ; 9.991 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 871 ;11.611 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 881 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7233 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1413 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1133 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 60 ; 0.211 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2792 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 522 ; 0.173 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2928 ; 1.581 ; 1.310 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2928 ; 1.574 ; 1.310 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3716 ; 2.307 ; 2.348 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3717 ; 2.307 ; 2.349 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3027 ; 2.869 ; 1.612 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3028 ; 2.868 ; 1.612 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4420 ; 4.256 ; 2.819 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4421 ; 4.256 ; 2.819 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9SD5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-AUG-25. REMARK 100 THE DEPOSITION ID IS D_1292150077. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.13 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 137926 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.360 REMARK 200 RESOLUTION RANGE LOW (A) : 79.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.9.02 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RATIO: 1:1 CO-CRYSTALLIZED WITH 10MM REMARK 280 KJB CONDITIONS: 20% PEG 3350, 0.1 M TRIS PH 8.7, 0.2 M NACL., REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.53800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ASP A 3 REMARK 465 ALA A 4 REMARK 465 GLY A 5 REMARK 465 LYS A 692 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 330 O HOH A 803 2.05 REMARK 500 OE1 GLN A 386 O HOH A 804 2.06 REMARK 500 OD1 ASP A 245 O HOH A 806 2.11 REMARK 500 O HOH A 900 O HOH A 1443 2.11 REMARK 500 O HOH A 1389 O HOH A 1467 2.14 REMARK 500 O HOH A 1475 O HOH A 1510 2.14 REMARK 500 O HOH A 1138 O HOH A 1433 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 848 O HOH A 1275 1455 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 448 CA SER A 448 CB 0.091 REMARK 500 GLU A 487 CD GLU A 487 OE1 0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 34 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 135 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 MET A 178 CG - SD - CE ANGL. DEV. = -9.9 DEGREES REMARK 500 ARG A 224 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP A 245 CB - CA - C ANGL. DEV. = 12.4 DEGREES REMARK 500 ARG A 257 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 257 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 TYR A 275 CB - CG - CD1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 290 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 319 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 327 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 GLU A 360 OE1 - CD - OE2 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG A 401 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 518 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 553 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 606 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 289 173.91 -56.22 REMARK 500 HIS A 314 68.81 -155.40 REMARK 500 ALA A 351 -123.75 -139.56 REMARK 500 ASP A 501 -84.16 -147.01 REMARK 500 THR A 537 -72.63 -144.06 REMARK 500 ASP A 612 71.25 -161.34 REMARK 500 LEU A 671 75.86 -111.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 65 0.13 SIDE CHAIN REMARK 500 ARG A 99 0.10 SIDE CHAIN REMARK 500 ARG A 224 0.11 SIDE CHAIN REMARK 500 ARG A 290 0.09 SIDE CHAIN REMARK 500 ARG A 416 0.08 SIDE CHAIN REMARK 500 TYR A 507 0.08 SIDE CHAIN REMARK 500 ARG A 553 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9SD5 A 1 692 UNP Q32M88 PGGHG_HUMAN 1 692 SEQADV 9SD5 GLY A 0 UNP Q32M88 EXPRESSION TAG SEQADV 9SD5 GLN A 574 UNP Q32M88 GLU 574 ENGINEERED MUTATION SEQRES 1 A 693 GLY MET GLU ASP ALA GLY GLU ASP PRO THR THR PHE ALA SEQRES 2 A 693 ALA HIS SER LEU PRO SER ASP PRO ARG LEU LEU ALA THR SEQRES 3 A 693 VAL THR ASN ALA TYR LEU GLY THR ARG VAL PHE HIS ASP SEQRES 4 A 693 THR LEU HIS VAL SER GLY VAL TYR ASN GLY ALA GLY GLY SEQRES 5 A 693 ASP THR HIS ARG ALA MET LEU PRO SER PRO LEU ASN VAL SEQRES 6 A 693 ARG LEU GLU ALA PRO ALA GLY MET GLY GLU GLN LEU THR SEQRES 7 A 693 GLU THR PHE ALA LEU ASP THR ASN THR GLY SER PHE LEU SEQRES 8 A 693 HIS THR LEU GLU GLY PRO ARG PHE ARG ALA SER GLN CYS SEQRES 9 A 693 ILE TYR ALA HIS ARG THR LEU PRO HIS VAL LEU ALA PHE SEQRES 10 A 693 ARG VAL SER ILE ALA ARG LEU ALA PRO GLY SER GLY PRO SEQRES 11 A 693 ILE THR LEU LEU LEU ARG SER ALA PHE SER PRO GLU SER SEQRES 12 A 693 PRO ASP LEU ASP LEU HIS GLN GLY PRO ASP PHE GLN GLY SEQRES 13 A 693 ALA ARG TYR LEU TYR GLY HIS THR LEU THR PRO GLU GLN SEQRES 14 A 693 PRO GLY GLY PRO GLN GLN GLU VAL HIS MET LEU TRP THR SEQRES 15 A 693 PRO ALA PRO PRO ASP LEU THR LEU GLY GLU GLY GLU GLU SEQRES 16 A 693 ALA ARG THR TRP ASP PHE LEU THR ALA VAL GLY GLY SER SEQRES 17 A 693 GLN ALA GLU ALA GLN ALA CYS LEU THR GLU ALA LEU GLN SEQRES 18 A 693 LEU GLN ALA ARG GLY ALA LEU TYR THR ALA HIS ALA GLN SEQRES 19 A 693 ALA TRP ALA GLN LEU TRP VAL GLU CYS GLY LEU ASP VAL SEQRES 20 A 693 VAL GLY PRO LEU GLN LEU ARG GLN ALA LEU ARG GLY SER SEQRES 21 A 693 LEU TYR TYR LEU LEU SER ALA LEU PRO GLN PRO LYS ALA SEQRES 22 A 693 PRO GLY TYR ILE CYS HIS GLY LEU SER PRO GLY GLY LEU SEQRES 23 A 693 SER ASN GLY SER ARG GLU GLU CYS TYR TRP GLY HIS VAL SEQRES 24 A 693 PHE TRP ASP GLN ASP LEU TRP MET PHE PRO SER ILE LEU SEQRES 25 A 693 MET PHE HIS PRO GLU ALA ALA ARG ALA ILE LEU GLU TYR SEQRES 26 A 693 ARG ILE ARG THR LEU ASP GLY ALA LEU GLU ASN ALA GLN SEQRES 27 A 693 ASN LEU GLY TYR GLN GLY ALA LYS PHE ALA TRP GLU SER SEQRES 28 A 693 ALA ASP SER GLY LEU GLU VAL CYS PRO GLU ASP ILE TYR SEQRES 29 A 693 GLY VAL GLN GLU VAL HIS VAL ASN GLY ALA VAL VAL LEU SEQRES 30 A 693 ALA PHE GLU LEU TYR TYR HIS THR THR GLN ASP LEU GLN SEQRES 31 A 693 LEU PHE ARG GLU ALA GLY GLY TRP ASP VAL VAL ARG ALA SEQRES 32 A 693 VAL ALA GLU PHE TRP CYS SER ARG VAL GLU TRP SER PRO SEQRES 33 A 693 ARG GLU GLU LYS TYR HIS LEU ARG GLY VAL MET SER PRO SEQRES 34 A 693 ASP GLU TYR HIS SER GLY VAL ASN ASN SER VAL TYR THR SEQRES 35 A 693 ASN VAL LEU VAL GLN ASN SER LEU ARG PHE ALA ALA ALA SEQRES 36 A 693 LEU ALA GLN ASP LEU GLY LEU PRO ILE PRO SER GLN TRP SEQRES 37 A 693 LEU ALA VAL ALA ASP LYS ILE LYS VAL PRO PHE ASP VAL SEQRES 38 A 693 GLU GLN ASN PHE HIS PRO GLU PHE ASP GLY TYR GLU PRO SEQRES 39 A 693 GLY GLU VAL VAL LYS GLN ALA ASP VAL VAL LEU LEU GLY SEQRES 40 A 693 TYR PRO VAL PRO PHE SER LEU SER PRO ASP VAL ARG ARG SEQRES 41 A 693 LYS ASN LEU GLU ILE TYR GLU ALA VAL THR SER PRO GLN SEQRES 42 A 693 GLY PRO ALA MET THR TRP SER MET PHE ALA VAL GLY TRP SEQRES 43 A 693 MET GLU LEU LYS ASP ALA VAL ARG ALA ARG GLY LEU LEU SEQRES 44 A 693 ASP ARG SER PHE ALA ASN MET ALA GLU PRO PHE LYS VAL SEQRES 45 A 693 TRP THR GLN ASN ALA ASP GLY SER GLY ALA VAL ASN PHE SEQRES 46 A 693 LEU THR GLY MET GLY GLY PHE LEU GLN ALA VAL VAL PHE SEQRES 47 A 693 GLY CYS THR GLY PHE ARG VAL THR ARG ALA GLY VAL THR SEQRES 48 A 693 PHE ASP PRO VAL CYS LEU SER GLY ILE SER ARG VAL SER SEQRES 49 A 693 VAL SER GLY ILE PHE TYR GLN GLY ASN LYS LEU ASN PHE SEQRES 50 A 693 SER PHE SER GLU ASP SER VAL THR VAL GLU VAL THR ALA SEQRES 51 A 693 ARG ALA GLY PRO TRP ALA PRO HIS LEU GLU ALA GLU LEU SEQRES 52 A 693 TRP PRO SER GLN SER ARG LEU SER LEU LEU PRO GLY HIS SEQRES 53 A 693 LYS VAL SER PHE PRO ARG SER ALA GLY ARG ILE GLN MET SEQRES 54 A 693 SER PRO PRO LYS HET CL A 701 1 HET CL A 702 1 HET GOL A 703 12 HET GOL A 704 12 HET GOL A 705 18 HET GOL A 706 12 HET GOL A 707 6 HET GOL A 708 6 HET GOL A 709 6 HET GOL A 710 12 HET GOL A 711 6 HET GOL A 712 6 HET GOL A 713 6 HET GOL A 714 6 HET GOL A 715 6 HET GOL A 716 6 HET GOL A 717 6 HET GOL A 718 6 HET BGC A 719 12 HET GLC A 720 12 HET PEG A 721 7 HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 CL 2(CL 1-) FORMUL 4 GOL 16(C3 H8 O3) FORMUL 20 BGC C6 H12 O6 FORMUL 21 GLC C6 H12 O6 FORMUL 22 PEG C4 H10 O3 FORMUL 23 HOH *714(H2 O) HELIX 1 AA1 ASP A 19 LEU A 23 5 5 HELIX 2 AA2 ALA A 49 THR A 53 5 5 HELIX 3 AA3 ASN A 85 GLY A 87 5 3 HELIX 4 AA4 SER A 207 ARG A 224 1 18 HELIX 5 AA5 ALA A 226 CYS A 242 1 17 HELIX 6 AA6 PRO A 249 ALA A 266 1 18 HELIX 7 AA7 PHE A 299 MET A 306 1 8 HELIX 8 AA8 MET A 306 HIS A 314 1 9 HELIX 9 AA9 HIS A 314 THR A 328 1 15 HELIX 10 AB1 THR A 328 LEU A 339 1 12 HELIX 11 AB2 GLU A 360 GLU A 367 1 8 HELIX 12 AB3 HIS A 369 THR A 385 1 17 HELIX 13 AB4 LEU A 388 GLU A 393 1 6 HELIX 14 AB5 GLY A 395 VAL A 411 1 17 HELIX 15 AB6 SER A 438 LEU A 459 1 22 HELIX 16 AB7 PRO A 464 ILE A 474 1 11 HELIX 17 AB8 ASP A 501 LEU A 505 5 5 HELIX 18 AB9 SER A 514 ALA A 527 1 14 HELIX 19 AC1 THR A 537 LEU A 548 1 12 HELIX 20 AC2 ASP A 550 PHE A 562 1 13 HELIX 21 AC3 PHE A 584 PHE A 597 1 14 SHEET 1 AA1 9 THR A 10 ALA A 13 0 SHEET 2 AA1 9 THR A 77 ASP A 83 -1 O LEU A 82 N PHE A 11 SHEET 3 AA1 9 SER A 88 GLU A 94 -1 O LEU A 90 N ALA A 81 SHEET 4 AA1 9 PHE A 98 ALA A 106 -1 O ALA A 100 N LEU A 93 SHEET 5 AA1 9 VAL A 113 ARG A 122 -1 O ARG A 117 N CYS A 103 SHEET 6 AA1 9 ALA A 195 GLY A 205 -1 O TRP A 198 N VAL A 118 SHEET 7 AA1 9 GLU A 175 TRP A 180 -1 N LEU A 179 O ALA A 203 SHEET 8 AA1 9 ALA A 156 THR A 163 -1 N LEU A 159 O MET A 178 SHEET 9 AA1 9 LEU A 145 PHE A 153 -1 N HIS A 148 O TYR A 160 SHEET 1 AA2 4 THR A 25 THR A 27 0 SHEET 2 AA2 4 LEU A 31 ARG A 34 -1 O THR A 33 N VAL A 26 SHEET 3 AA2 4 THR A 39 VAL A 42 -1 O HIS A 41 N GLY A 32 SHEET 4 AA2 4 LEU A 58 PRO A 59 -1 O LEU A 58 N LEU A 40 SHEET 1 AA3 2 TYR A 46 ASN A 47 0 SHEET 2 AA3 2 HIS A 54 ARG A 55 -1 O HIS A 54 N ASN A 47 SHEET 1 AA4 3 VAL A 64 GLU A 67 0 SHEET 2 AA4 3 ILE A 130 SER A 136 -1 O ARG A 135 N ARG A 65 SHEET 3 AA4 3 ASP A 186 LEU A 189 -1 O LEU A 189 N ILE A 130 SHEET 1 AA5 5 GLY A 243 VAL A 247 0 SHEET 2 AA5 5 ARG A 621 TYR A 629 -1 O SER A 625 N GLY A 243 SHEET 3 AA5 5 ASN A 632 SER A 639 -1 O LEU A 634 N ILE A 627 SHEET 4 AA5 5 SER A 642 ARG A 650 -1 O ALA A 649 N LYS A 633 SHEET 5 AA5 5 VAL A 677 PHE A 679 -1 O VAL A 677 N VAL A 645 SHEET 1 AA6 2 GLU A 412 SER A 414 0 SHEET 2 AA6 2 LYS A 419 HIS A 421 -1 O HIS A 421 N GLU A 412 SHEET 1 AA7 2 ARG A 423 VAL A 425 0 SHEET 2 AA7 2 VAL A 435 ASN A 436 -1 O VAL A 435 N VAL A 425 SHEET 1 AA8 5 ARG A 603 THR A 605 0 SHEET 2 AA8 5 GLY A 608 PHE A 611 -1 O THR A 610 N ARG A 603 SHEET 3 AA8 5 GLY A 684 MET A 688 -1 O ILE A 686 N VAL A 609 SHEET 4 AA8 5 LEU A 658 LEU A 662 -1 N GLU A 661 O ARG A 685 SHEET 5 AA8 5 ARG A 668 LEU A 671 -1 O LEU A 671 N LEU A 658 LINK C2 BGC A 719 O2 GLC A 720 1555 1555 1.40 LINK C3 BGC A 719 O3 GLC A 720 1555 1555 1.41 LINK C4 BGC A 719 O4 GLC A 720 1555 1555 1.40 LINK C5 BGC A 719 O5 GLC A 720 1555 1555 1.43 LINK C6 BGC A 719 O6 GLC A 720 1555 1555 1.41 LINK C1 BGC A 719 O1 GLC A 720 1555 1555 1.31 LINK C1 BGC A 719 O5 GLC A 720 1555 1555 1.50 LINK O1 BGC A 719 C1 GLC A 720 1555 1555 1.35 LINK O2 BGC A 719 C2 GLC A 720 1555 1555 1.46 LINK O3 BGC A 719 C3 GLC A 720 1555 1555 1.46 LINK O4 BGC A 719 C4 GLC A 720 1555 1555 1.41 LINK O5 BGC A 719 C1 GLC A 720 1555 1555 1.36 LINK O5 BGC A 719 C5 GLC A 720 1555 1555 1.46 LINK O6 BGC A 719 C6 GLC A 720 1555 1555 1.44 CISPEP 1 CYS A 293 TYR A 294 0 0.50 CISPEP 2 TYR A 507 PRO A 508 0 3.20 CISPEP 3 GLU A 567 PRO A 568 0 -7.46 CISPEP 4 VAL A 582 ASN A 583 0 -18.57 CISPEP 5 TRP A 663 PRO A 664 0 11.01 CRYST1 54.071 77.076 79.888 90.00 98.55 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018494 0.000000 0.002781 0.00000 SCALE2 0.000000 0.012974 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012658 0.00000 CONECT 5628 5630 5632 CONECT 5629 5631 5633 CONECT 5630 5628 CONECT 5631 5629 CONECT 5632 5628 5634 5636 CONECT 5633 5629 5635 5637 CONECT 5634 5632 CONECT 5635 5633 CONECT 5636 5632 5638 CONECT 5637 5633 5639 CONECT 5638 5636 CONECT 5639 5637 CONECT 5640 5642 5644 CONECT 5641 5643 5645 CONECT 5642 5640 CONECT 5643 5641 CONECT 5644 5640 5646 5648 CONECT 5645 5641 5647 5649 CONECT 5646 5644 CONECT 5647 5645 CONECT 5648 5644 5650 CONECT 5649 5645 5651 CONECT 5650 5648 CONECT 5651 5649 CONECT 5652 5655 5658 CONECT 5653 5656 5659 CONECT 5654 5657 5660 CONECT 5655 5652 CONECT 5656 5653 CONECT 5657 5654 CONECT 5658 5652 5661 5664 CONECT 5659 5653 5662 5665 CONECT 5660 5654 5663 5666 CONECT 5661 5658 CONECT 5662 5659 CONECT 5663 5660 CONECT 5664 5658 5667 CONECT 5665 5659 5668 CONECT 5666 5660 5669 CONECT 5667 5664 CONECT 5668 5665 CONECT 5669 5666 CONECT 5670 5672 5674 CONECT 5671 5673 5675 CONECT 5672 5670 CONECT 5673 5671 CONECT 5674 5670 5676 5678 CONECT 5675 5671 5677 5679 CONECT 5676 5674 CONECT 5677 5675 CONECT 5678 5674 5680 CONECT 5679 5675 5681 CONECT 5680 5678 CONECT 5681 5679 CONECT 5682 5683 5684 CONECT 5683 5682 CONECT 5684 5682 5685 5686 CONECT 5685 5684 CONECT 5686 5684 5687 CONECT 5687 5686 CONECT 5688 5689 5690 CONECT 5689 5688 CONECT 5690 5688 5691 5692 CONECT 5691 5690 CONECT 5692 5690 5693 CONECT 5693 5692 CONECT 5694 5695 5696 CONECT 5695 5694 CONECT 5696 5694 5697 5698 CONECT 5697 5696 CONECT 5698 5696 5699 CONECT 5699 5698 CONECT 5700 5702 5704 CONECT 5701 5703 5705 CONECT 5702 5700 CONECT 5703 5701 CONECT 5704 5700 5706 5708 CONECT 5705 5701 5707 5709 CONECT 5706 5704 CONECT 5707 5705 CONECT 5708 5704 5710 CONECT 5709 5705 5711 CONECT 5710 5708 CONECT 5711 5709 CONECT 5712 5713 5714 CONECT 5713 5712 CONECT 5714 5712 5715 5716 CONECT 5715 5714 CONECT 5716 5714 5717 CONECT 5717 5716 CONECT 5718 5719 5720 CONECT 5719 5718 CONECT 5720 5718 5721 5722 CONECT 5721 5720 CONECT 5722 5720 5723 CONECT 5723 5722 CONECT 5724 5725 5726 CONECT 5725 5724 CONECT 5726 5724 5727 5728 CONECT 5727 5726 CONECT 5728 5726 5729 CONECT 5729 5728 CONECT 5730 5731 5732 CONECT 5731 5730 CONECT 5732 5730 5733 5734 CONECT 5733 5732 CONECT 5734 5732 5735 CONECT 5735 5734 CONECT 5736 5737 5738 CONECT 5737 5736 CONECT 5738 5736 5739 5740 CONECT 5739 5738 CONECT 5740 5738 5741 CONECT 5741 5740 CONECT 5742 5743 5744 CONECT 5743 5742 CONECT 5744 5742 5745 5746 CONECT 5745 5744 CONECT 5746 5744 5747 CONECT 5747 5746 CONECT 5748 5749 5750 CONECT 5749 5748 CONECT 5750 5748 5751 5752 CONECT 5751 5750 CONECT 5752 5750 5753 CONECT 5753 5752 CONECT 5754 5755 5756 CONECT 5755 5754 CONECT 5756 5754 5757 5758 CONECT 5757 5756 CONECT 5758 5756 5759 CONECT 5759 5758 CONECT 5760 5761 5765 5767 5779 CONECT 5761 5760 5762 5768 5780 CONECT 5762 5761 5763 5769 5781 CONECT 5763 5762 5764 5770 5782 CONECT 5764 5763 5771 5783 CONECT 5765 5760 5766 5770 5778 CONECT 5765 5782 CONECT 5766 5765 5772 CONECT 5767 5760 5773 CONECT 5768 5761 5774 CONECT 5769 5762 5775 CONECT 5770 5763 5765 5772 5776 CONECT 5771 5764 5777 CONECT 5772 5766 5770 5773 5778 CONECT 5772 5782 CONECT 5773 5767 5772 5774 5779 CONECT 5774 5768 5773 5775 5780 CONECT 5775 5769 5774 5776 5781 CONECT 5776 5770 5775 5777 5782 CONECT 5777 5771 5776 5783 CONECT 5778 5765 5772 CONECT 5779 5760 5773 CONECT 5780 5761 5774 CONECT 5781 5762 5775 CONECT 5782 5763 5765 5772 5776 CONECT 5783 5764 5777 CONECT 5784 5785 5786 CONECT 5785 5784 CONECT 5786 5784 5787 CONECT 5787 5786 5788 CONECT 5788 5787 5789 CONECT 5789 5788 5790 CONECT 5790 5789 MASTER 381 0 21 21 32 0 0 6 6165 1 165 54 END