HEADER TRANSFERASE 14-AUG-25 9SDV TITLE TRNA (GUANINE-7-)-METHYLTRANSFERASE (TRMD) FROM STAPHYLOCOCCUS AUREUS TITLE 2 IN COMPLEX WITH SAM-COMPETITIVE COMPOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: TRMD, SAS1174; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRMD, INHIBITOR, M7G, S. AUREUS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.C.WELDERT,F.HOF,A.F.HUEBNER,E.WOLF,F.BARTHELS REVDAT 2 07-JAN-26 9SDV 1 JRNL REVDAT 1 17-DEC-25 9SDV 0 JRNL AUTH A.F.HUBNER,A.C.WELDERT,T.MARCINIAK,F.HOF,V.S.BECK,S.CARIEN, JRNL AUTH 2 S.N.MULARTSCHYK,E.WOLF,W.ZIEBUHR,F.BARTHELS JRNL TITL NANOSCALE DIRECT-TO-BIOLOGY OPTIMIZATION AND STRUCTURAL JRNL TITL 2 INSIGHTS INTO SELECTIVE S. AUREUS TRMD INHIBITORS. JRNL REF J.MED.CHEM. V. 68 26246 2025 JRNL REFN ISSN 0022-2623 JRNL PMID 41367353 JRNL DOI 10.1021/ACS.JMEDCHEM.5C02323 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 12564 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 608 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.2300 - 3.9700 1.00 3148 171 0.1957 0.2408 REMARK 3 2 3.9700 - 3.1500 1.00 2970 150 0.2235 0.2980 REMARK 3 3 3.1500 - 2.7500 1.00 2921 142 0.2907 0.3597 REMARK 3 4 2.7500 - 2.5000 1.00 2917 145 0.2584 0.3397 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.341 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.444 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1893 REMARK 3 ANGLE : 1.190 2568 REMARK 3 CHIRALITY : 0.064 279 REMARK 3 PLANARITY : 0.015 338 REMARK 3 DIHEDRAL : 6.005 261 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -12.0951 19.6032 39.4372 REMARK 3 T TENSOR REMARK 3 T11: 0.4872 T22: 0.7328 REMARK 3 T33: 0.3451 T12: -0.1837 REMARK 3 T13: -0.0366 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 1.9683 L22: 0.6724 REMARK 3 L33: 2.0063 L12: 0.8456 REMARK 3 L13: 1.9891 L23: 0.7379 REMARK 3 S TENSOR REMARK 3 S11: -0.5156 S12: 0.7583 S13: 0.1066 REMARK 3 S21: -0.3151 S22: 0.4162 S23: -0.0814 REMARK 3 S31: -0.5014 S32: 0.8948 S33: 0.0519 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9SDV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-AUG-25. REMARK 100 THE DEPOSITION ID IS D_1292150195. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12606 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 56.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 78.90 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 66.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.46600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: CUBIC CRYSTAL GREW WITHIN 2 WEEKS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8MG/ML PROTEIN IN 1.4M NA MALONATE PH REMARK 280 7.4, 0.1M BIS-TRIS PROPANE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 63.34750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.34750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.34750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.34750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 63.34750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.34750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 63.34750 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 63.34750 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 63.34750 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 63.34750 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 63.34750 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 63.34750 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 63.34750 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 63.34750 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 63.34750 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 63.34750 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 63.34750 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 63.34750 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 31.67375 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 95.02125 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 95.02125 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 31.67375 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 31.67375 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 31.67375 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 95.02125 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 95.02125 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 31.67375 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 95.02125 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 31.67375 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 95.02125 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 31.67375 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 95.02125 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 95.02125 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 95.02125 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 31.67375 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 95.02125 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 31.67375 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 31.67375 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 31.67375 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 95.02125 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 95.02125 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 31.67375 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 31.67375 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 95.02125 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 95.02125 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 95.02125 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 95.02125 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 31.67375 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 95.02125 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 31.67375 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 95.02125 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 31.67375 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 31.67375 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 31.67375 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 GLY A 9 REMARK 465 LEU A 10 REMARK 465 VAL A 11 REMARK 465 PRO A 12 REMARK 465 ARG A 13 REMARK 465 GLY A 14 REMARK 465 SER A 15 REMARK 465 HIS A 16 REMARK 465 MET A 17 REMARK 465 ALA A 18 REMARK 465 LEU A 176 REMARK 465 GLY A 177 REMARK 465 ASN A 178 REMARK 465 GLU A 179 REMARK 465 GLN A 180 REMARK 465 SER A 181 REMARK 465 HIS A 182 REMARK 465 GLN A 183 REMARK 465 ASP A 184 REMARK 465 ASP A 185 REMARK 465 SER A 186 REMARK 465 PHE A 187 REMARK 465 LYS A 262 REMARK 465 GLY A 263 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 35 CG CD1 CD2 REMARK 470 ASN A 36 CB CG OD1 ND2 REMARK 470 LYS A 41 CG CD CE NZ REMARK 470 ARG A 42 CB CG CD NE CZ NH1 NH2 REMARK 470 GLN A 44 CD OE1 NE2 REMARK 470 LYS A 48 CD CE NZ REMARK 470 GLN A 50 CG CD OE1 NE2 REMARK 470 LYS A 63 CE NZ REMARK 470 GLU A 90 CG CD OE1 OE2 REMARK 470 GLU A 193 CG CD OE1 OE2 REMARK 470 LYS A 204 CD CE NZ REMARK 470 LYS A 235 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 27 61.64 -114.20 REMARK 500 SER A 38 -143.61 70.93 REMARK 500 LYS A 63 -3.62 66.66 REMARK 500 ASN A 65 73.33 -102.67 REMARK 500 VAL A 67 -43.29 66.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 137 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9SDV A 20 263 UNP Q6G9X3 TRMD_STAAS 2 245 SEQADV 9SDV HIS A 1 UNP Q6G9X3 EXPRESSION TAG SEQADV 9SDV HIS A 2 UNP Q6G9X3 EXPRESSION TAG SEQADV 9SDV HIS A 3 UNP Q6G9X3 EXPRESSION TAG SEQADV 9SDV HIS A 4 UNP Q6G9X3 EXPRESSION TAG SEQADV 9SDV HIS A 5 UNP Q6G9X3 EXPRESSION TAG SEQADV 9SDV HIS A 6 UNP Q6G9X3 EXPRESSION TAG SEQADV 9SDV SER A 7 UNP Q6G9X3 EXPRESSION TAG SEQADV 9SDV SER A 8 UNP Q6G9X3 EXPRESSION TAG SEQADV 9SDV GLY A 9 UNP Q6G9X3 EXPRESSION TAG SEQADV 9SDV LEU A 10 UNP Q6G9X3 EXPRESSION TAG SEQADV 9SDV VAL A 11 UNP Q6G9X3 EXPRESSION TAG SEQADV 9SDV PRO A 12 UNP Q6G9X3 EXPRESSION TAG SEQADV 9SDV ARG A 13 UNP Q6G9X3 EXPRESSION TAG SEQADV 9SDV GLY A 14 UNP Q6G9X3 EXPRESSION TAG SEQADV 9SDV SER A 15 UNP Q6G9X3 EXPRESSION TAG SEQADV 9SDV HIS A 16 UNP Q6G9X3 EXPRESSION TAG SEQADV 9SDV MET A 17 UNP Q6G9X3 EXPRESSION TAG SEQADV 9SDV ALA A 18 UNP Q6G9X3 EXPRESSION TAG SEQADV 9SDV SER A 19 UNP Q6G9X3 EXPRESSION TAG SEQRES 1 A 263 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 A 263 GLY SER HIS MET ALA SER LYS ILE ASP TYR LEU THR LEU SEQRES 3 A 263 PHE PRO GLU MET PHE ASP GLY VAL LEU ASN HIS SER ILE SEQRES 4 A 263 MET LYS ARG ALA GLN GLU ASN ASN LYS LEU GLN ILE ASN SEQRES 5 A 263 THR VAL ASN PHE ARG ASP TYR ALA ILE ASN LYS HIS ASN SEQRES 6 A 263 GLN VAL ASP ASP TYR PRO TYR GLY GLY GLY GLN GLY MET SEQRES 7 A 263 VAL LEU LYS PRO GLU PRO VAL PHE ASN ALA MET GLU ASP SEQRES 8 A 263 LEU ASP VAL THR GLU GLN THR ARG VAL ILE LEU MET CYS SEQRES 9 A 263 PRO GLN GLY GLU PRO PHE SER HIS GLN LYS ALA VAL GLU SEQRES 10 A 263 LEU SER LYS ALA ASP HIS ILE VAL PHE ILE CYS GLY HIS SEQRES 11 A 263 TYR GLU GLY TYR ASP GLU ARG ILE ARG THR HIS LEU VAL SEQRES 12 A 263 THR ASP GLU ILE SER MET GLY ASP TYR VAL LEU THR GLY SEQRES 13 A 263 GLY GLU LEU PRO ALA MET THR MET THR ASP ALA ILE VAL SEQRES 14 A 263 ARG LEU ILE PRO GLY VAL LEU GLY ASN GLU GLN SER HIS SEQRES 15 A 263 GLN ASP ASP SER PHE SER ASP GLY LEU LEU GLU PHE PRO SEQRES 16 A 263 GLN TYR THR ARG PRO ARG GLU PHE LYS GLY LEU THR VAL SEQRES 17 A 263 PRO ASP VAL LEU LEU SER GLY ASN HIS ALA ASN ILE ASP SEQRES 18 A 263 ALA TRP ARG HIS GLU GLN LYS LEU ILE ARG THR TYR ASN SEQRES 19 A 263 LYS ARG PRO ASP LEU ILE GLU LYS TYR PRO LEU THR ASN SEQRES 20 A 263 ALA ASP LYS GLN ILE LEU GLU ARG TYR LYS ILE GLY LEU SEQRES 21 A 263 LYS LYS GLY HET EDO A 301 10 HET 21X A 302 22 HETNAM EDO 1,2-ETHANEDIOL HETNAM 21X N-[4-(AMINOMETHYL)BENZYL]-4-OXO-3,4-DIHYDROTHIENO[2,3- HETNAM 2 21X D]PYRIMIDINE-5-CARBOXAMIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO C2 H6 O2 FORMUL 3 21X C15 H14 N4 O2 S FORMUL 4 HOH *58(H2 O) HELIX 1 AA1 PHE A 27 MET A 30 5 4 HELIX 2 AA2 PHE A 31 HIS A 37 1 7 HELIX 3 AA3 HIS A 37 ASN A 46 1 10 HELIX 4 AA4 ARG A 57 ALA A 60 5 4 HELIX 5 AA5 LYS A 81 LEU A 92 1 12 HELIX 6 AA6 SER A 111 LYS A 120 1 10 HELIX 7 AA7 ASP A 135 LEU A 142 1 8 HELIX 8 AA8 GLY A 157 LEU A 171 1 15 HELIX 9 AA9 PRO A 209 SER A 214 5 6 HELIX 10 AB1 ASN A 216 ARG A 236 1 21 HELIX 11 AB2 ARG A 236 LYS A 242 1 7 HELIX 12 AB3 THR A 246 LEU A 260 1 15 SHEET 1 AA1 6 GLN A 50 ASN A 55 0 SHEET 2 AA1 6 LYS A 20 THR A 25 1 N ILE A 21 O GLN A 50 SHEET 3 AA1 6 HIS A 123 ILE A 127 1 O PHE A 126 N LEU A 24 SHEET 4 AA1 6 ARG A 99 MET A 103 1 N ILE A 101 O ILE A 127 SHEET 5 AA1 6 ASP A 145 SER A 148 1 O ASP A 145 N LEU A 102 SHEET 6 AA1 6 GLU A 108 PRO A 109 1 N GLU A 108 O GLU A 146 SHEET 1 AA2 3 ASP A 68 ASP A 69 0 SHEET 2 AA2 3 VAL A 79 LEU A 80 -1 O VAL A 79 N ASP A 69 SHEET 3 AA2 3 GLY A 133 TYR A 134 1 O GLY A 133 N LEU A 80 SHEET 1 AA3 2 GLU A 202 PHE A 203 0 SHEET 2 AA3 2 LEU A 206 THR A 207 -1 O LEU A 206 N PHE A 203 CISPEP 1 ARG A 199 PRO A 200 0 -0.90 CRYST1 126.695 126.695 126.695 90.00 90.00 90.00 P 43 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007893 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007893 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007893 0.00000 CONECT 1827 1828 1829 1831 1832 CONECT 1828 1827 1833 CONECT 1829 1827 1830 1834 1835 CONECT 1830 1829 1836 CONECT 1831 1827 CONECT 1832 1827 CONECT 1833 1828 CONECT 1834 1829 CONECT 1835 1829 CONECT 1836 1830 CONECT 1837 1839 1844 CONECT 1838 1840 1844 CONECT 1839 1837 1845 CONECT 1840 1838 1845 CONECT 1841 1843 1858 CONECT 1842 1843 1846 1848 CONECT 1843 1841 1842 1849 CONECT 1844 1837 1838 1850 CONECT 1845 1839 1840 1851 CONECT 1846 1842 1852 1858 CONECT 1847 1852 1853 CONECT 1848 1842 1853 1856 CONECT 1849 1843 1855 1857 CONECT 1850 1844 1854 CONECT 1851 1845 1855 CONECT 1852 1846 1847 CONECT 1853 1847 1848 CONECT 1854 1850 CONECT 1855 1849 1851 CONECT 1856 1848 CONECT 1857 1849 CONECT 1858 1841 1846 MASTER 381 0 2 12 11 0 0 6 1903 1 32 21 END