HEADER PROTEIN TRANSPORT 21-AUG-25 9SFW TITLE STRUCTURE OF PEX8 IN COMPLEX WITH PEROXISOMAL RECEPTOR PEX5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOMAL BIOGENESIS FACTOR 8; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PEROXIN-8,PEROXISOMAL PROTEIN PER3; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: PEX8 CONSTRUCT MISSING 1-33AA WAS USED FOR AFFINITY COMPND 7 PURIFICATION AND SUBSEQUENT EXPERIMENTAL ANALYSIS.; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PEROXISOMAL TARGETING SIGNAL RECEPTOR; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: PTS1 RECEPTOR,PTS1R,PEROXIN-5,PEROXISOMAL PROTEIN PAS8; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: THE MISMATCH HIGHLIGHTED IN THE ALIGNMENT IS DUE TO A COMPND 14 SMALL PEPTIDE IN THE STRUCTURE, SPANNING RESIDUES 54-66, WHICH IS COMPND 15 ALIGNING INCORRECTLY AT THE REGION STARTING WITH RESIDUE 243 IN THE COMPND 16 SAMPLE SEQUENCE. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KOMAGATAELLA PASTORIS; SOURCE 3 ORGANISM_TAXID: 4922; SOURCE 4 GENE: PEX8, PER3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: LOBSTR; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: KOMAGATAELLA PASTORIS; SOURCE 10 ORGANISM_TAXID: 4922; SOURCE 11 GENE: PEX5, PAS8; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS-RIL KEYWDS PEROXISOMAL TRANSLOCATION RECEPTOR, HEAT REPEAT, PROTEIN TRANSPORT EXPDTA ELECTRON MICROSCOPY AUTHOR L.EKAL,E.MULLAPUDI,G.CHOJNOWSKI,M.WILMANNS REVDAT 1 02-SEP-26 9SFW 0 JRNL AUTH L.EKAL,E.MULLAPUDI,G.CHOJNOWSKI,M.WILMANNS JRNL TITL CRYO-EM STRUCTURE OF PICHIA PASTORIS PEX8-PEX5 RECEPTOR JRNL TITL 2 COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 4.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, EPU, CRYOSPARC, MOLREP, REMARK 3 CRYOSPARC, CRYOSPARC, CRYOSPARC, REMARK 3 SERVALCAT, UCSF CHIMERAX, ISOLDE, COOT REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.500 REMARK 3 NUMBER OF PARTICLES : 85869 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9SFW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-AUG-25. REMARK 100 THE DEPOSITION ID IS D_1292141849. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : PEX8-PEX5 COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 750.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6450.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 130000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 TYR A 2 REMARK 465 ARG A 3 REMARK 465 LEU A 4 REMARK 465 GLY A 5 REMARK 465 SER A 6 REMARK 465 GLN A 7 REMARK 465 GLY A 8 REMARK 465 ARG A 9 REMARK 465 SER A 10 REMARK 465 ILE A 11 REMARK 465 GLN A 12 REMARK 465 SER A 13 REMARK 465 GLN A 14 REMARK 465 LEU A 15 REMARK 465 GLN A 16 REMARK 465 ASN A 17 REMARK 465 GLY A 18 REMARK 465 ASP A 19 REMARK 465 SER A 20 REMARK 465 SER A 21 REMARK 465 SER A 22 REMARK 465 GLY A 23 REMARK 465 ARG A 24 REMARK 465 PRO A 25 REMARK 465 LEU A 26 REMARK 465 GLN A 27 REMARK 465 LEU A 28 REMARK 465 GLN A 29 REMARK 465 GLY A 30 REMARK 465 THR A 31 REMARK 465 GLY A 32 REMARK 465 MET A 33 REMARK 465 ARG A 34 REMARK 465 GLU A 35 REMARK 465 ALA A 36 REMARK 465 GLN A 37 REMARK 465 ARG A 38 REMARK 465 ILE A 39 REMARK 465 PRO A 40 REMARK 465 GLN A 41 REMARK 465 VAL A 592 REMARK 465 GLU A 593 REMARK 465 LEU A 594 REMARK 465 PRO A 595 REMARK 465 ALA A 596 REMARK 465 ILE A 597 REMARK 465 GLU A 598 REMARK 465 ALA A 599 REMARK 465 VAL A 600 REMARK 465 VAL A 601 REMARK 465 ALA A 602 REMARK 465 PRO A 603 REMARK 465 LYS A 604 REMARK 465 ASN A 605 REMARK 465 ASP A 606 REMARK 465 GLU A 607 REMARK 465 GLU A 608 REMARK 465 ASN A 609 REMARK 465 ASN A 610 REMARK 465 THR A 611 REMARK 465 SER A 612 REMARK 465 ASP A 613 REMARK 465 ALA A 614 REMARK 465 GLN A 615 REMARK 465 ASP A 616 REMARK 465 GLY A 617 REMARK 465 GLY A 618 REMARK 465 PRO A 619 REMARK 465 LYS A 620 REMARK 465 GLU A 621 REMARK 465 LEU A 622 REMARK 465 GLN A 623 REMARK 465 SER A 624 REMARK 465 LEU A 625 REMARK 465 ASN A 626 REMARK 465 ASP A 627 REMARK 465 LEU A 628 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 465 ILE B 4 REMARK 465 GLY B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 SER B 8 REMARK 465 ASP B 9 REMARK 465 CYS B 10 REMARK 465 ALA B 11 REMARK 465 ALA B 12 REMARK 465 GLY B 13 REMARK 465 SER B 14 REMARK 465 ASN B 15 REMARK 465 PRO B 16 REMARK 465 LEU B 17 REMARK 465 ALA B 18 REMARK 465 GLN B 19 REMARK 465 PHE B 20 REMARK 465 THR B 21 REMARK 465 LYS B 22 REMARK 465 HIS B 23 REMARK 465 THR B 24 REMARK 465 GLN B 25 REMARK 465 HIS B 26 REMARK 465 ASP B 27 REMARK 465 THR B 28 REMARK 465 SER B 29 REMARK 465 LEU B 30 REMARK 465 GLN B 31 REMARK 465 GLN B 32 REMARK 465 SER B 33 REMARK 465 MET B 34 REMARK 465 ARG B 35 REMARK 465 ASN B 36 REMARK 465 GLY B 37 REMARK 465 GLU B 38 REMARK 465 PHE B 39 REMARK 465 GLN B 40 REMARK 465 GLN B 41 REMARK 465 GLY B 42 REMARK 465 ASN B 43 REMARK 465 GLN B 44 REMARK 465 ARG B 45 REMARK 465 MET B 46 REMARK 465 MET B 47 REMARK 465 ARG B 48 REMARK 465 ASN B 49 REMARK 465 GLU B 50 REMARK 465 SER B 51 REMARK 465 THR B 52 REMARK 465 MET B 53 REMARK 465 GLN B 67 REMARK 465 GLN B 68 REMARK 465 ASN B 69 REMARK 465 ASN B 70 REMARK 465 PRO B 71 REMARK 465 ALA B 72 REMARK 465 PHE B 73 REMARK 465 ASN B 74 REMARK 465 PHE B 75 REMARK 465 GLN B 76 REMARK 465 PRO B 77 REMARK 465 MET B 78 REMARK 465 GLN B 79 REMARK 465 HIS B 80 REMARK 465 GLU B 81 REMARK 465 LEU B 82 REMARK 465 ASN B 83 REMARK 465 VAL B 84 REMARK 465 MET B 85 REMARK 465 GLN B 86 REMARK 465 GLN B 87 REMARK 465 ASN B 88 REMARK 465 MET B 89 REMARK 465 ASN B 90 REMARK 465 ALA B 91 REMARK 465 PRO B 92 REMARK 465 GLN B 93 REMARK 465 GLN B 94 REMARK 465 VAL B 95 REMARK 465 ALA B 96 REMARK 465 ASN B 97 REMARK 465 ASN B 98 REMARK 465 SER B 99 REMARK 465 TRP B 100 REMARK 465 ASN B 101 REMARK 465 GLN B 102 REMARK 465 GLU B 103 REMARK 465 PHE B 104 REMARK 465 ARG B 105 REMARK 465 MET B 106 REMARK 465 LYS B 107 REMARK 465 ASP B 108 REMARK 465 PRO B 109 REMARK 465 MET B 110 REMARK 465 VAL B 111 REMARK 465 ALA B 112 REMARK 465 ASN B 113 REMARK 465 ALA B 114 REMARK 465 PRO B 115 REMARK 465 SER B 116 REMARK 465 ALA B 117 REMARK 465 GLN B 118 REMARK 465 VAL B 119 REMARK 465 GLN B 120 REMARK 465 THR B 121 REMARK 465 PRO B 122 REMARK 465 VAL B 123 REMARK 465 GLN B 124 REMARK 465 SER B 125 REMARK 465 THR B 126 REMARK 465 ASN B 127 REMARK 465 TRP B 128 REMARK 465 ALA B 129 REMARK 465 GLN B 130 REMARK 465 ASP B 131 REMARK 465 PHE B 132 REMARK 465 GLN B 133 REMARK 465 GLN B 134 REMARK 465 ALA B 135 REMARK 465 GLY B 136 REMARK 465 PRO B 137 REMARK 465 GLU B 138 REMARK 465 VAL B 139 REMARK 465 GLN B 140 REMARK 465 HIS B 141 REMARK 465 HIS B 142 REMARK 465 ALA B 143 REMARK 465 GLN B 144 REMARK 465 GLN B 145 REMARK 465 HIS B 146 REMARK 465 GLN B 147 REMARK 465 HIS B 148 REMARK 465 PRO B 149 REMARK 465 ILE B 150 REMARK 465 LEU B 151 REMARK 465 SER B 152 REMARK 465 VAL B 153 REMARK 465 PRO B 154 REMARK 465 GLY B 155 REMARK 465 VAL B 156 REMARK 465 ARG B 157 REMARK 465 ALA B 158 REMARK 465 GLY B 159 REMARK 465 ILE B 160 REMARK 465 TYR B 161 REMARK 465 GLY B 162 REMARK 465 GLY B 163 REMARK 465 GLY B 164 REMARK 465 ARG B 165 REMARK 465 LEU B 166 REMARK 465 MET B 167 REMARK 465 GLY B 168 REMARK 465 GLY B 169 REMARK 465 SER B 170 REMARK 465 MET B 171 REMARK 465 MET B 172 REMARK 465 ASN B 173 REMARK 465 ARG B 174 REMARK 465 ALA B 175 REMARK 465 ALA B 176 REMARK 465 GLN B 177 REMARK 465 MET B 178 REMARK 465 GLN B 179 REMARK 465 GLN B 180 REMARK 465 GLN B 181 REMARK 465 ASN B 182 REMARK 465 PRO B 183 REMARK 465 ALA B 184 REMARK 465 GLN B 185 REMARK 465 ALA B 186 REMARK 465 GLN B 187 REMARK 465 THR B 188 REMARK 465 SER B 189 REMARK 465 GLU B 190 REMARK 465 GLN B 191 REMARK 465 SER B 192 REMARK 465 GLN B 193 REMARK 465 THR B 194 REMARK 465 GLN B 195 REMARK 465 TRP B 196 REMARK 465 GLU B 197 REMARK 465 ASP B 198 REMARK 465 GLN B 199 REMARK 465 PHE B 200 REMARK 465 LYS B 201 REMARK 465 ASP B 202 REMARK 465 ILE B 203 REMARK 465 GLU B 204 REMARK 465 SER B 205 REMARK 465 MET B 206 REMARK 465 LEU B 207 REMARK 465 ASN B 208 REMARK 465 SER B 209 REMARK 465 LYS B 210 REMARK 465 THR B 211 REMARK 465 GLN B 212 REMARK 465 GLU B 213 REMARK 465 PRO B 214 REMARK 465 LYS B 215 REMARK 465 THR B 216 REMARK 465 LYS B 217 REMARK 465 GLN B 218 REMARK 465 GLN B 219 REMARK 465 GLU B 220 REMARK 465 GLN B 221 REMARK 465 ASN B 222 REMARK 465 THR B 223 REMARK 465 PHE B 224 REMARK 465 GLU B 225 REMARK 465 GLN B 226 REMARK 465 VAL B 227 REMARK 465 TRP B 228 REMARK 465 ASP B 229 REMARK 465 ASP B 230 REMARK 465 ILE B 231 REMARK 465 GLN B 232 REMARK 465 VAL B 233 REMARK 465 SER B 234 REMARK 465 TYR B 235 REMARK 465 ALA B 236 REMARK 465 ASP B 237 REMARK 465 VAL B 238 REMARK 465 GLU B 239 REMARK 465 LEU B 240 REMARK 465 THR B 241 REMARK 465 ASN B 242 REMARK 465 ASP B 243 REMARK 465 GLN B 244 REMARK 465 PHE B 245 REMARK 465 GLN B 246 REMARK 465 ALA B 247 REMARK 465 GLN B 248 REMARK 465 TRP B 249 REMARK 465 GLU B 250 REMARK 465 LYS B 251 REMARK 465 ASP B 252 REMARK 465 PHE B 253 REMARK 465 ALA B 254 REMARK 465 GLN B 255 REMARK 465 TYR B 256 REMARK 465 ALA B 257 REMARK 465 GLU B 258 REMARK 465 GLY B 259 REMARK 465 ARG B 260 REMARK 465 LEU B 261 REMARK 465 ASN B 262 REMARK 465 TYR B 263 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 340 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 390 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 LEU A 450 CB - CG - CD2 ANGL. DEV. = -10.5 DEGREES REMARK 500 GLU A 452 OE1 - CD - OE2 ANGL. DEV. = 7.7 DEGREES REMARK 500 GLU A 452 CG - CD - OE2 ANGL. DEV. = -12.9 DEGREES REMARK 500 ARG A 463 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 GLU A 552 CG - CD - OE1 ANGL. DEV. = 12.1 DEGREES REMARK 500 ARG A 556 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 PRO A 560 N - CA - CB ANGL. DEV. = -7.6 DEGREES REMARK 500 VAL A 642 CA - CB - CG1 ANGL. DEV. = 9.8 DEGREES REMARK 500 LEU A 645 CB - CG - CD1 ANGL. DEV. = 13.2 DEGREES REMARK 500 MET B 65 CG - SD - CE ANGL. DEV. = 21.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 120 116.10 -163.11 REMARK 500 PRO A 121 59.48 -92.55 REMARK 500 TYR A 170 63.00 -118.54 REMARK 500 SER A 253 -0.17 73.32 REMARK 500 ASP A 330 66.97 -69.09 REMARK 500 ASP A 414 87.22 -152.61 REMARK 500 LEU A 466 -64.87 -120.58 REMARK 500 ASP A 561 -6.37 76.99 REMARK 500 ASN A 588 46.48 -82.45 REMARK 500 MET B 65 1.45 -69.47 REMARK 500 LYS B 327 78.93 -105.25 REMARK 500 ASN B 470 32.30 70.18 REMARK 500 LYS B 471 69.67 -117.35 REMARK 500 ARG B 554 67.37 -109.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 704 VAL A 705 -148.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 58 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-54867 RELATED DB: EMDB REMARK 900 STRUCTURE OF PEX8 IN COMPLEX WITH PEROXISOMAL RECEPTOR PEX5 DBREF 9SFW A 1 713 UNP Q01962 PEX8_PICPA 1 713 DBREF 9SFW B 1 576 UNP P33292 PEX5_PICPA 1 576 SEQRES 1 A 713 MET TYR ARG LEU GLY SER GLN GLY ARG SER ILE GLN SER SEQRES 2 A 713 GLN LEU GLN ASN GLY ASP SER SER SER GLY ARG PRO LEU SEQRES 3 A 713 GLN LEU GLN GLY THR GLY MET ARG GLU ALA GLN ARG ILE SEQRES 4 A 713 PRO GLN GLN LEU ASP TYR LEU LEU ALA GLU ILE ILE SER SEQRES 5 A 713 PRO ASN GLU ASP THR ASN VAL ILE GLY TYR LEU ALA TYR SEQRES 6 A 713 TYR TYR PRO LYS LEU LYS ASN GLU GLN ASN VAL ALA LEU SEQRES 7 A 713 LEU THR ASP PHE PHE LEU ARG CYS PRO THR TYR PHE SER SEQRES 8 A 713 HIS SER ASN VAL VAL SER LEU ARG ASN ASN TYR PRO VAL SEQRES 9 A 713 MET GLU ALA PHE ASN TYR ILE MET THR THR LYS PHE LYS SEQRES 10 A 713 VAL SER GLN PRO THR VAL PRO PHE TYR ARG PHE TYR ALA SEQRES 11 A 713 ALA VAL LEU ALA SER LEU LEU ASN CYS GLU LYS THR ASP SEQRES 12 A 713 PRO SER HIS HIS TRP LYS LEU ILE PRO ILE LEU THR GLY SEQRES 13 A 713 VAL LEU LEU SER ILE LYS GLY ARG ASP ASP VAL GLU LEU SEQRES 14 A 713 TYR PRO ASP HIS SER ARG SER ILE LYS GLY SER ASP THR SEQRES 15 A 713 ALA VAL ALA GLN LEU LEU GLN ARG CYS LEU LEU ARG PHE SEQRES 16 A 713 TYR GLN SER GLY ASP ALA ARG SER TYR ASP LEU ASN ALA SEQRES 17 A 713 LEU VAL ILE ILE SER MET SER CYS ALA LEU ASP TYR VAL SEQRES 18 A 713 GLU ASP ASP THR ILE LYS LYS ILE LEU TYR CYS PHE ASN SEQRES 19 A 713 TYR THR ARG ALA ILE ILE ASP LEU ILE TYR TYR SER PRO SEQRES 20 A 713 TYR GLY LEU ASN ASP SER ASP ILE PRO LEU LEU SER ASP SEQRES 21 A 713 SER SER VAL ASN SER GLN SER PHE ASP GLN LEU LEU ASN SEQRES 22 A 713 ASN ASN PRO ALA LEU LYS HIS LEU ASN ARG LEU SER PHE SEQRES 23 A 713 LEU PHE GLU ARG THR VAL LYS LEU ASN ASP GLY SER ILE SEQRES 24 A 713 GLN SER ASN LEU ASN ASP ILE ASP ILE SER LEU ASN LYS SEQRES 25 A 713 MET GLN SER PHE SER GLU LYS LEU SER LYS LYS ILE SER SEQRES 26 A 713 VAL LEU ASP ASP ASP SER SER LYS GLY VAL GLY GLN LEU SEQRES 27 A 713 LEU ARG GLN CYS LEU TYR ALA SER ILE ILE ILE HIS GLN SEQRES 28 A 713 ALA ILE LEU THR THR PHE PHE GLN LEU ASP ASN ALA ASP SEQRES 29 A 713 TYR THR LYS TYR PHE LEU PRO SER PHE SER ARG LYS ILE SEQRES 30 A 713 LEU SER ILE LEU PHE ASN LEU PHE PHE ILE VAL ASP ARG SEQRES 31 A 713 ILE GLY THR GLY GLY PHE GLN PRO TYR ASN PHE VAL TYR SEQRES 32 A 713 LEU THR CYS LEU GLN GLY ILE ILE GLN TYR ASP MET LYS SEQRES 33 A 713 THR ALA GLU SER LEU VAL LYS THR PHE THR THR GLY ILE SEQRES 34 A 713 ASN TYR SER SER LEU LYS ASP SER GLU VAL ALA ARG ALA SEQRES 35 A 713 LYS LEU LEU PHE THR LEU ASN LEU MET GLU GLN ILE VAL SEQRES 36 A 713 ASN ILE CYS SER ASP ASP LEU ARG LEU GLU LEU ILE VAL SEQRES 37 A 713 PRO LEU VAL GLU ASP LEU VAL ASN ASN LYS ASN ALA CYS SEQRES 38 A 713 VAL ASP ILE HIS ASN HIS VAL PHE LYS SER ILE PHE GLU SEQRES 39 A 713 SER ALA HIS SER VAL ILE LEU LYS PHE PHE THR VAL VAL SEQRES 40 A 713 ASP SER SER VAL LYS ASN VAL ASP TYR GLU THR ASN VAL SEQRES 41 A 713 THR LEU VAL SER GLU LYS ILE ILE PRO TYR LEU THR LEU SEQRES 42 A 713 VAL ILE ASP GLN PHE PRO GLU PHE LEU SER ILE ASN GLN SEQRES 43 A 713 LEU ASP ILE ALA ILE GLU THR ILE SER ARG THR VAL PHE SEQRES 44 A 713 PRO ASP SER PRO ILE TYR SER TYR ASP LYS ASN ILE SER SEQRES 45 A 713 SER MET PHE LEU ASN VAL LEU PHE ASN LYS CYS LEU THR SEQRES 46 A 713 VAL ASP ASN ASP GLU LEU VAL GLU LEU PRO ALA ILE GLU SEQRES 47 A 713 ALA VAL VAL ALA PRO LYS ASN ASP GLU GLU ASN ASN THR SEQRES 48 A 713 SER ASP ALA GLN ASP GLY GLY PRO LYS GLU LEU GLN SER SEQRES 49 A 713 LEU ASN ASP LEU LYS SER ARG ARG SER ALA LEU ILE SER SEQRES 50 A 713 ALA LEU ILE SER VAL PHE PRO LEU ILE PRO VAL LYS ASP SEQRES 51 A 713 TYR THR LYS TRP LEU SER ILE ALA PHE TYR ASP LEU ILE SEQRES 52 A 713 VAL ALA THR PRO GLU ARG THR GLU ARG ALA PHE LEU GLN SEQRES 53 A 713 GLU ARG LEU TRP ASP CYS VAL VAL GLY THR ASN LYS TYR SEQRES 54 A 713 ASP PRO GLN LYS GLY ASN LEU GLY ILE MET TRP TRP TYR SEQRES 55 A 713 GLU ASN VAL ASN ALA GLN SER THR ALA LYS LEU SEQRES 1 B 576 MET SER LEU ILE GLY GLY GLY SER ASP CYS ALA ALA GLY SEQRES 2 B 576 SER ASN PRO LEU ALA GLN PHE THR LYS HIS THR GLN HIS SEQRES 3 B 576 ASP THR SER LEU GLN GLN SER MET ARG ASN GLY GLU PHE SEQRES 4 B 576 GLN GLN GLY ASN GLN ARG MET MET ARG ASN GLU SER THR SEQRES 5 B 576 MET SER PRO MET GLU ARG GLN GLN MET ASP GLN PHE MET SEQRES 6 B 576 GLN GLN GLN ASN ASN PRO ALA PHE ASN PHE GLN PRO MET SEQRES 7 B 576 GLN HIS GLU LEU ASN VAL MET GLN GLN ASN MET ASN ALA SEQRES 8 B 576 PRO GLN GLN VAL ALA ASN ASN SER TRP ASN GLN GLU PHE SEQRES 9 B 576 ARG MET LYS ASP PRO MET VAL ALA ASN ALA PRO SER ALA SEQRES 10 B 576 GLN VAL GLN THR PRO VAL GLN SER THR ASN TRP ALA GLN SEQRES 11 B 576 ASP PHE GLN GLN ALA GLY PRO GLU VAL GLN HIS HIS ALA SEQRES 12 B 576 GLN GLN HIS GLN HIS PRO ILE LEU SER VAL PRO GLY VAL SEQRES 13 B 576 ARG ALA GLY ILE TYR GLY GLY GLY ARG LEU MET GLY GLY SEQRES 14 B 576 SER MET MET ASN ARG ALA ALA GLN MET GLN GLN GLN ASN SEQRES 15 B 576 PRO ALA GLN ALA GLN THR SER GLU GLN SER GLN THR GLN SEQRES 16 B 576 TRP GLU ASP GLN PHE LYS ASP ILE GLU SER MET LEU ASN SEQRES 17 B 576 SER LYS THR GLN GLU PRO LYS THR LYS GLN GLN GLU GLN SEQRES 18 B 576 ASN THR PHE GLU GLN VAL TRP ASP ASP ILE GLN VAL SER SEQRES 19 B 576 TYR ALA ASP VAL GLU LEU THR ASN ASP GLN PHE GLN ALA SEQRES 20 B 576 GLN TRP GLU LYS ASP PHE ALA GLN TYR ALA GLU GLY ARG SEQRES 21 B 576 LEU ASN TYR GLY GLU TYR LYS TYR GLU GLU LYS ASN GLN SEQRES 22 B 576 PHE ARG ASN ASP PRO ASP ALA TYR GLU ILE GLY MET ARG SEQRES 23 B 576 LEU MET GLU SER GLY ALA LYS LEU SER GLU ALA GLY LEU SEQRES 24 B 576 ALA PHE GLU ALA ALA VAL GLN GLN ASP PRO LYS HIS VAL SEQRES 25 B 576 ASP ALA TRP LEU LYS LEU GLY GLU VAL GLN THR GLN ASN SEQRES 26 B 576 GLU LYS GLU SER ASP GLY ILE ALA ALA LEU GLU LYS CYS SEQRES 27 B 576 LEU GLU LEU ASP PRO THR ASN LEU ALA ALA LEU MET THR SEQRES 28 B 576 LEU ALA ILE SER TYR ILE ASN ASP GLY TYR ASP ASN ALA SEQRES 29 B 576 ALA TYR ALA THR LEU GLU ARG TRP ILE GLU THR LYS TYR SEQRES 30 B 576 PRO ASP ILE ALA SER ARG ALA ARG SER SER ASN PRO ASP SEQRES 31 B 576 LEU ASP GLY GLY ASP ARG ILE GLU GLN ASN LYS ARG VAL SEQRES 32 B 576 THR GLU LEU PHE MET LYS ALA ALA GLN LEU SER PRO ASP SEQRES 33 B 576 VAL ALA SER MET ASP ALA ASP VAL GLN THR GLY LEU GLY SEQRES 34 B 576 VAL LEU PHE TYR SER MET GLU GLU PHE ASP LYS THR ILE SEQRES 35 B 576 ASP CYS PHE LYS ALA ALA ILE GLU VAL GLU PRO ASP LYS SEQRES 36 B 576 ALA LEU ASN TRP ASN ARG LEU GLY ALA ALA LEU ALA ASN SEQRES 37 B 576 TYR ASN LYS PRO GLU GLU ALA VAL GLU ALA TYR SER ARG SEQRES 38 B 576 ALA LEU GLN LEU ASN PRO ASN PHE VAL ARG ALA ARG TYR SEQRES 39 B 576 ASN LEU GLY VAL SER PHE ILE ASN MET GLY ARG TYR LYS SEQRES 40 B 576 GLU ALA VAL GLU HIS LEU LEU THR GLY ILE SER LEU HIS SEQRES 41 B 576 GLU VAL GLU GLY VAL ASP ALA SER GLU MET SER SER ASN SEQRES 42 B 576 GLN GLY LEU GLN ASN ASN ALA LEU VAL GLU THR LEU LYS SEQRES 43 B 576 ARG ALA PHE LEU GLY MET ASN ARG ARG ASP LEU VAL ASP SEQRES 44 B 576 LYS VAL TYR PRO GLY MET GLY LEU ALA GLN PHE ARG LYS SEQRES 45 B 576 MET PHE ASP PHE HELIX 1 AA1 GLN A 42 SER A 52 1 11 HELIX 2 AA2 ASN A 58 TYR A 67 1 10 HELIX 3 AA3 PRO A 68 LEU A 70 5 3 HELIX 4 AA4 ASN A 72 ARG A 85 1 14 HELIX 5 AA5 CYS A 86 SER A 91 1 6 HELIX 6 AA6 SER A 97 VAL A 118 1 22 HELIX 7 AA7 PRO A 124 ASP A 143 1 20 HELIX 8 AA8 HIS A 146 TRP A 148 5 3 HELIX 9 AA9 LYS A 149 GLU A 168 1 20 HELIX 10 AB1 HIS A 173 SER A 198 1 26 HELIX 11 AB2 GLY A 199 ARG A 202 5 4 HELIX 12 AB3 SER A 203 ALA A 217 1 15 HELIX 13 AB4 LEU A 218 VAL A 221 5 4 HELIX 14 AB5 GLU A 222 PHE A 233 1 12 HELIX 15 AB6 ASN A 234 TYR A 245 1 12 HELIX 16 AB7 LEU A 250 ASP A 254 5 5 HELIX 17 AB8 ILE A 255 SER A 259 5 5 HELIX 18 AB9 SER A 267 ASN A 275 1 9 HELIX 19 AC1 ASN A 275 HIS A 280 1 6 HELIX 20 AC2 HIS A 280 ASN A 295 1 16 HELIX 21 AC3 SER A 298 LEU A 327 1 30 HELIX 22 AC4 SER A 332 LEU A 360 1 29 HELIX 23 AC5 ASN A 362 GLY A 392 1 31 HELIX 24 AC6 PHE A 396 ASP A 414 1 19 HELIX 25 AC7 ASP A 414 ILE A 429 1 16 HELIX 26 AC8 ASN A 430 LEU A 434 5 5 HELIX 27 AC9 SER A 437 VAL A 455 1 19 HELIX 28 AD1 SER A 459 LEU A 466 1 8 HELIX 29 AD2 LEU A 466 ASN A 476 1 11 HELIX 30 AD3 ASN A 486 VAL A 488 5 3 HELIX 31 AD4 PHE A 489 THR A 505 1 17 HELIX 32 AD5 ASP A 515 PHE A 538 1 24 HELIX 33 AD6 SER A 543 PHE A 559 1 17 HELIX 34 AD7 SER A 562 ASP A 568 1 7 HELIX 35 AD8 LYS A 569 VAL A 586 1 18 HELIX 36 AD9 SER A 630 VAL A 642 1 13 HELIX 37 AE1 PHE A 643 ILE A 646 5 4 HELIX 38 AE2 PRO A 647 LEU A 662 1 16 HELIX 39 AE3 GLU A 668 ASP A 690 1 23 HELIX 40 AE4 ASP A 690 VAL A 705 1 16 HELIX 41 AE5 PRO B 55 MET B 65 1 11 HELIX 42 AE6 ASP B 279 SER B 290 1 12 HELIX 43 AE7 LYS B 293 ASP B 308 1 16 HELIX 44 AE8 HIS B 311 ASN B 325 1 15 HELIX 45 AE9 LYS B 327 ASP B 342 1 16 HELIX 46 AF1 ASN B 345 ASP B 359 1 15 HELIX 47 AF2 TYR B 361 TYR B 377 1 17 HELIX 48 AF3 TYR B 377 ASN B 388 1 12 HELIX 49 AF4 ASP B 395 SER B 414 1 20 HELIX 50 AF5 ASP B 421 MET B 435 1 15 HELIX 51 AF6 GLU B 437 GLU B 452 1 16 HELIX 52 AF7 LYS B 455 TYR B 469 1 15 HELIX 53 AF8 LYS B 471 ASN B 486 1 16 HELIX 54 AF9 PHE B 489 MET B 503 1 15 HELIX 55 AG1 ARG B 505 LEU B 519 1 15 HELIX 56 AG2 MET B 530 GLY B 535 1 6 HELIX 57 AG3 ASN B 538 MET B 552 1 15 HELIX 58 AG4 ARG B 554 ASP B 559 1 6 HELIX 59 AG5 LEU B 567 ARG B 571 5 5 CISPEP 1 PHE A 538 PRO A 539 0 -2.28 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 524 0 0 59 0 0 0 6 7698 2 0 100 END